Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46934 * 2 1 4 4 H 1.09003 * 109.47295 * 180.32524 * 3 2 1 5 5 C 1.50706 * 109.47305 * 300.32308 * 3 2 1 6 6 H 1.07996 * 119.99938 * 119.99853 * 5 3 2 7 7 C 1.37877 * 119.99743 * 299.99899 * 5 3 2 8 8 N 1.31515 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99770 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46768 * 90.00451 * 9 7 5 11 11 H 1.48503 * 109.47106 * 209.99994 * 9 7 5 12 12 H 1.48496 * 109.47142 * 330.00414 * 9 7 5 13 13 N 1.46899 * 109.47335 * 60.32355 * 3 2 1 14 14 C 1.48564 * 111.00299 * 176.76435 * 13 3 2 15 15 C 1.54373 * 104.59487 * 200.95785 * 14 13 3 16 16 H 1.09000 * 117.60954 * 244.71595 * 15 14 13 17 17 C 1.54260 * 105.06151 * 23.85550 * 15 14 13 18 18 H 1.09003 * 121.78372 * 222.12920 * 17 15 14 19 19 C 1.48561 * 111.00293 * 61.34467 * 13 3 2 20 20 C 1.53008 * 118.12792 * 89.19381 * 15 14 13 21 21 F 1.39902 * 117.44110 * 15.98309 * 20 15 14 22 22 F 1.39899 * 117.44147 * 160.68192 * 20 15 14 23 23 H 1.09004 * 109.47429 * 65.09594 * 1 2 3 24 24 H 1.09002 * 109.46868 * 185.08881 * 1 2 3 25 25 H 1.09003 * 109.47514 * 305.09289 * 1 2 3 26 26 H 1.08993 * 109.47321 * 240.00123 * 2 1 3 27 27 H 1.09003 * 109.47118 * 119.99917 * 2 1 3 28 28 H 0.96999 * 120.00169 * 180.02562 * 8 7 5 29 29 H 1.08999 * 110.40936 * 319.73802 * 14 13 3 30 30 H 1.08998 * 110.41255 * 82.06127 * 14 13 3 31 31 H 1.09004 * 110.40579 * 277.82534 * 19 13 3 32 32 H 1.09003 * 110.40796 * 40.25696 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0058 5 6 1.5310 2.1552 -1.2265 6 1 0.9106 3.0331 -1.1224 7 6 1.8575 1.6866 -2.4814 8 7 2.6126 0.6172 -2.6081 9 14 1.2262 2.5696 -4.0016 10 1 2.2018 3.6124 -4.4092 11 1 1.0556 1.5924 -5.1066 12 1 -0.0806 3.2061 -3.6974 13 7 1.5566 2.1327 1.2033 14 6 2.0962 3.5150 1.2772 15 6 1.9742 3.9011 2.7668 16 1 1.2986 4.7170 3.0235 17 6 1.9544 2.5597 3.5283 18 1 1.2735 2.3821 4.3608 19 6 2.0659 1.4759 2.4347 20 6 3.1441 3.5704 3.6959 21 9 4.3716 3.2592 3.1012 22 9 3.2210 4.2647 4.9080 23 1 -0.3634 0.4328 -0.9321 24 1 -0.3633 -1.0236 0.0912 25 1 -0.3634 0.5908 0.8409 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.8426 0.2877 -3.4909 29 1 3.1401 3.5327 0.9641 30 1 1.5030 4.1882 0.6583 31 1 1.4487 0.6142 2.6888 32 1 3.1051 1.1745 2.3027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715418411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = -71.887231 kcal Electronic energy + Delta-G solvation = -16897.790630 eV Core-core repulsion = 13915.727497 eV Total energy + Delta-G solvation = -2982.063133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.113 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.70302 -48.42305 -40.46190 -36.85822 -33.92959 -32.22005 -29.68134 -28.27598 -25.82966 -24.12828 -22.23608 -21.56672 -20.67335 -18.87339 -18.24606 -17.62005 -17.12322 -16.93412 -16.10992 -15.39665 -15.27167 -14.95260 -14.75474 -14.59684 -14.29729 -14.01944 -13.51066 -13.30609 -12.95119 -12.82086 -12.57944 -12.46047 -12.37788 -12.03124 -11.63363 -11.53282 -11.25596 -10.83455 -10.71774 -10.48046 -9.17765 -8.08604 -6.18791 1.42400 1.44382 1.53766 1.75685 2.00519 2.43660 3.16121 3.18415 3.23608 3.40394 3.68821 3.99175 4.14617 4.43072 4.52295 4.61278 4.75467 4.80701 4.86605 4.91362 4.97721 5.04733 5.27576 5.37710 5.44185 5.67960 5.75363 5.86160 6.16638 6.31673 6.55324 6.92006 7.48961 8.97228 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036293 B = 0.007768 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.311689 B = 3603.712806 C = 3909.433186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C 0.214 3.786 4 H -0.042 1.042 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.496 5.496 14 C 0.068 3.932 15 C -0.144 4.144 16 H 0.167 0.833 17 C -0.128 4.128 18 H 0.176 0.824 19 C 0.052 3.948 20 C 0.187 3.813 21 F -0.178 7.178 22 F -0.157 7.157 23 H 0.032 0.968 24 H 0.039 0.961 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 3.834 11.092 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C 0.107 3.893 4 H -0.024 1.024 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.221 5.221 14 C -0.060 4.060 15 C -0.164 4.164 16 H 0.184 0.816 17 C -0.147 4.147 18 H 0.193 0.807 19 C -0.076 4.076 20 C 0.150 3.850 21 F -0.158 7.158 22 F -0.137 7.137 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.376 3.708 10.907 12.004 hybrid contribution 1.406 0.337 -1.049 1.787 sum -1.969 4.045 9.858 10.836 Atomic orbital electron populations 1.21330 0.95354 0.98857 1.01082 1.21422 0.96791 0.96927 0.99441 1.19254 0.90486 0.92315 0.87286 1.02436 1.21228 1.30809 1.11829 0.90462 0.92275 1.25625 0.95461 0.95728 1.01669 1.70013 1.38153 1.24130 1.23700 0.85634 0.78936 0.78235 0.79328 1.20637 1.21190 1.19009 1.65638 1.53629 1.01015 1.01772 1.22447 0.98076 0.92730 0.92708 1.24853 0.96900 1.01294 0.93334 0.81555 1.25526 0.95852 0.92004 1.01361 0.80659 1.22722 0.98637 0.97025 0.89234 1.21212 0.78703 1.01954 0.83083 1.92965 1.46471 1.93236 1.83168 1.92993 1.96619 1.79775 1.44312 0.94915 0.94228 0.92291 0.92110 0.95142 0.93107 0.95825 0.88933 0.87525 0.95430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.49 9.48 71.98 0.68 -3.81 16 2 C -0.11 -4.98 5.25 30.59 0.16 -4.82 16 3 C 0.21 10.46 1.52 44.17 0.07 10.53 16 4 H -0.04 -2.38 7.98 -2.39 -0.02 -2.39 16 5 C -0.50 -26.61 6.96 25.60 0.18 -26.43 16 6 H 0.06 3.09 7.16 -2.91 -0.02 3.07 16 7 C 0.01 0.74 5.30 84.65 0.45 1.19 16 8 N -0.92 -52.31 11.32 21.45 0.24 -52.07 16 9 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.50 -19.72 4.35 -860.73 -3.74 -23.47 16 14 C 0.07 2.51 5.49 86.45 0.47 2.98 16 15 C -0.14 -3.96 6.97 -9.90 -0.07 -4.03 16 16 H 0.17 3.49 8.14 -2.39 -0.02 3.47 16 17 C -0.13 -3.32 7.28 -8.49 -0.06 -3.38 16 18 H 0.18 3.23 8.14 -2.39 -0.02 3.21 16 19 C 0.05 1.71 5.14 86.45 0.44 2.15 16 20 C 0.19 5.41 5.26 32.00 0.17 5.58 16 21 F -0.18 -6.24 16.44 44.97 0.74 -5.50 16 22 F -0.16 -4.23 17.60 44.97 0.79 -3.44 16 23 H 0.03 1.48 7.40 -2.39 -0.02 1.46 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 2.26 7.46 -2.39 -0.02 2.24 16 26 H 0.06 3.23 6.08 -2.39 -0.01 3.21 16 27 H 0.03 1.27 6.96 -2.39 -0.02 1.25 16 28 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.02 0.99 7.39 -2.39 -0.02 0.97 16 30 H 0.09 3.38 7.57 -2.39 -0.02 3.36 16 31 H 0.11 3.18 7.67 -2.38 -0.02 3.16 16 32 H 0.03 1.03 7.64 -2.39 -0.02 1.01 16 Total: -1.00 -59.10 265.24 3.66 -55.44 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.11 Total: 4.07 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 2.49 Total: -20.03 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -3.50 Total: -75.54 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 1.53 Total: -8.94 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -59.10 3.66 -55.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715418411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.448 kcal (2) G-P(sol) polarization free energy of solvation -59.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds