Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.33571 * 126.01836 * 90.00014 * 12 11 10 14 14 N 1.31870 * 114.50984 * 180.02562 * 13 12 11 15 15 C 1.29130 * 117.07517 * 0.02562 * 14 13 12 16 16 Cl 1.73609 * 124.91990 * 180.02562 * 15 14 13 17 17 S 1.70974 * 110.15818 * 359.72476 * 15 14 13 18 18 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 20 20 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 21 21 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 22 22 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 23 23 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 24 24 H 1.07996 * 122.74511 * 359.96425 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 3.0398 -6.6094 1.0802 14 7 3.9059 -7.5684 0.8177 15 6 4.1397 -7.8250 -0.4261 16 17 5.2374 -9.0410 -1.0007 17 16 3.2052 -6.7993 -1.4250 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.8403 -3.5488 -0.7819 22 1 0.8798 -4.9817 0.8886 23 1 0.8805 -4.9812 -0.8914 24 1 2.7774 -6.3186 2.0867 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718837540.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = 16.042179 kcal Electronic energy + Delta-G solvation = -11355.220381 eV Core-core repulsion = 9034.427605 eV Total energy + Delta-G solvation = -2320.792776 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.013 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.80385 -38.05682 -37.25107 -34.71818 -32.03037 -28.87423 -26.87004 -24.82140 -23.38074 -21.36147 -19.50938 -18.55869 -17.30952 -16.65037 -16.18012 -15.79451 -15.43624 -15.10207 -14.99076 -14.07033 -13.50452 -13.26811 -12.93225 -12.70675 -12.66814 -12.46596 -12.26565 -12.01388 -11.36021 -10.89069 -10.65750 -10.45764 -9.89690 -9.20066 -8.22445 -6.32963 -0.57183 -0.33967 0.48773 0.80874 1.43215 1.44385 1.55892 1.61119 2.41223 3.11839 3.48748 3.63941 3.85097 4.12349 4.62697 4.71347 4.96979 5.07335 5.25275 5.60145 5.99664 6.34907 6.40423 6.62386 6.85858 7.37855 8.88839 Molecular weight = 232.01amu Principal moments of inertia in cm(-1) A = 0.059966 B = 0.004674 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.820296 B = 5988.709087 C = 6133.808262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.684 5.684 11 C 0.134 3.866 12 C -0.206 4.206 13 C 0.053 3.947 14 N -0.482 5.482 15 C 0.049 3.951 16 Cl 0.034 6.966 17 S 0.230 5.770 18 H 0.266 0.734 19 H -0.030 1.030 20 H 0.009 0.991 21 H 0.335 0.665 22 H 0.096 0.904 23 H 0.045 0.955 24 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -15.294 -3.623 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.315 5.315 11 C 0.003 3.997 12 C -0.328 4.328 13 C -0.098 4.098 14 N -0.199 5.199 15 C -0.253 4.253 16 Cl 0.061 6.939 17 S 0.480 5.520 18 H 0.074 0.926 19 H -0.013 1.013 20 H 0.027 0.973 21 H 0.152 0.848 22 H 0.114 0.886 23 H 0.063 0.937 24 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.707 -15.531 -3.661 17.309 hybrid contribution -0.243 0.893 0.072 0.928 sum 6.464 -14.639 -3.589 16.400 Atomic orbital electron populations 1.70071 1.07663 1.28041 1.51394 1.25875 0.95742 1.03154 0.94564 0.85376 0.78506 0.78237 0.78458 1.19709 1.20743 1.19097 1.21526 0.93817 0.91453 1.50792 0.91884 1.19255 0.90514 0.88191 0.94031 1.60646 1.20504 1.00772 1.49554 1.20297 0.91852 0.85212 1.02344 1.26153 1.06695 1.04541 0.95453 1.21738 0.94158 0.92492 1.01400 1.66044 1.17266 1.17918 1.18701 1.27197 1.02973 1.01487 0.93671 1.98417 1.59234 1.50635 1.85606 1.83945 1.33777 1.26320 1.07930 0.92560 1.01263 0.97266 0.84790 0.88595 0.93731 0.78772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.39 14 2 C 0.01 0.29 5.46 84.66 0.46 0.75 14 3 Si 0.97 43.30 29.54 68.60 2.03 45.33 14 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 14 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 14 7 C -0.54 -29.73 9.32 25.60 0.24 -29.49 14 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 14 9 C 0.21 10.52 5.44 85.56 0.47 10.99 14 10 N -0.68 -27.52 6.48 -521.98 -3.38 -30.90 14 11 C 0.13 4.26 6.22 85.55 0.53 4.79 14 12 C -0.21 -5.68 6.11 24.63 0.15 -5.53 14 13 C 0.05 1.46 11.25 83.63 0.94 2.40 14 14 N -0.48 -13.74 10.56 -194.44 -2.05 -15.79 14 15 C 0.05 1.23 8.03 130.64 1.05 2.28 14 16 Cl 0.03 0.70 29.33 -2.72 -0.08 0.62 14 17 S 0.23 5.33 23.22 -56.49 -1.31 4.02 14 18 H 0.27 14.64 8.31 -92.71 -0.77 13.87 14 19 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 14 20 H 0.01 0.51 8.14 -2.39 -0.02 0.49 14 21 H 0.34 12.95 8.71 -89.69 -0.78 12.16 14 22 H 0.10 2.96 8.14 -2.39 -0.02 2.94 14 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 14 24 H 0.20 4.79 8.06 -2.91 -0.02 4.77 14 Total: -1.00 -60.82 251.01 -0.23 -61.05 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 0.44 Total: 3.87 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 3.84 Total: -13.82 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -5.15 Total: -101.07 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.31 Total: 4.02 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -60.82 -0.23 -61.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718837540.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.094 kcal (2) G-P(sol) polarization free energy of solvation -60.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds