Wall clock time and date at job start Mon Mar 30 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.05625 * 301.50154 * 9 7 2 11 11 N 1.46794 * 110.07794 * 63.05952 * 9 7 2 12 12 C 1.30391 * 107.45070 * 119.22976 * 11 9 7 13 13 C 1.46894 * 132.19111 * 180.02562 * 12 11 9 14 14 C 1.34546 * 119.97055 * 180.02562 * 13 12 11 15 15 C 1.46030 * 121.92132 * 359.97438 * 14 13 12 16 16 C 1.47795 * 119.16837 * 179.97438 * 15 14 13 17 17 O 1.21467 * 120.00012 * 180.02562 * 16 15 14 18 18 O 1.34722 * 120.00333 * 0.02562 * 16 15 14 19 19 C 1.36148 * 121.66048 * 359.97438 * 15 14 13 20 20 C 1.47029 * 119.57427 * 0.02562 * 19 15 14 21 21 N 1.30234 * 132.23491 * 179.97438 * 20 19 15 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.01213 * 359.97438 * 13 12 11 24 24 H 1.08001 * 119.03735 * 180.02562 * 14 13 12 25 25 H 0.96698 * 117.00501 * 180.02562 * 18 16 15 26 26 H 1.08001 * 120.21342 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6013 -2.5511 0.8858 11 7 0.4578 -2.6293 -1.2159 12 6 0.8811 -3.6906 -1.8441 13 6 0.4740 -4.3160 -3.1094 14 6 1.0908 -5.4330 -3.5360 15 6 2.1694 -6.0580 -2.7754 16 6 2.8043 -7.2848 -3.3008 17 8 3.7025 -7.8174 -2.6803 18 8 2.3870 -7.8125 -4.4680 19 6 2.6048 -5.5390 -1.5945 20 6 1.9791 -4.3191 -1.0633 21 7 2.1937 -3.6244 0.0172 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.3207 -3.8798 -3.6965 24 1 0.7797 -5.8800 -4.4687 25 1 2.8322 -8.6157 -4.7709 26 1 3.4047 -6.0202 -1.0513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725540015.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:38 Heat of formation + Delta-G solvation = -4.005296 kcal Electronic energy + Delta-G solvation = -15011.051469 eV Core-core repulsion = 12249.069347 eV Total energy + Delta-G solvation = -2761.982121 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.41852 -39.71936 -36.34134 -35.88709 -33.05256 -32.14024 -29.45898 -28.43542 -25.53927 -23.47265 -21.79494 -20.63464 -20.31321 -18.04772 -17.39554 -17.01529 -16.02564 -15.70266 -15.33724 -14.29777 -14.07548 -13.91301 -13.73001 -12.82848 -12.47196 -12.26769 -11.87856 -11.69515 -11.40847 -10.90575 -10.78141 -10.32916 -10.26227 -10.17743 -9.63327 -9.54160 -8.90566 -8.71703 -7.98991 -6.70893 -4.51875 0.23219 1.66882 2.48524 2.83890 2.86036 3.30313 3.33663 3.50432 4.02759 4.27581 4.35189 4.62976 4.74718 4.87582 5.06320 5.14651 5.59117 5.76972 6.03222 6.21469 6.27568 6.39531 6.54706 6.60436 6.85733 7.12178 7.58479 7.76648 8.02087 8.31867 8.48198 9.25198 10.70204 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.050153 B = 0.006009 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.152692 B = 4658.768799 C = 4846.501600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.034 3.966 3 Si 1.085 2.915 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.577 4.577 8 H 0.072 0.928 9 C 0.256 3.744 10 H 0.107 0.893 11 N -0.400 5.400 12 C 0.077 3.923 13 C -0.056 4.056 14 C -0.101 4.101 15 C -0.114 4.114 16 C 0.532 3.468 17 O -0.517 6.517 18 O -0.509 6.509 19 C 0.031 3.969 20 C 0.083 3.917 21 N -0.407 5.407 22 H 0.284 0.716 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.412 0.588 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -11.753 -8.309 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.911 3.089 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.617 4.617 8 H 0.090 0.910 9 C 0.059 3.941 10 H 0.124 0.876 11 N -0.118 5.118 12 C -0.107 4.107 13 C -0.075 4.075 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.377 3.623 17 O -0.407 6.407 18 O -0.320 6.320 19 C 0.011 3.989 20 C -0.100 4.100 21 N -0.125 5.125 22 H 0.095 0.905 23 H 0.155 0.845 24 H 0.159 0.841 25 H 0.271 0.729 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.688 -8.874 -6.968 11.409 hybrid contribution 0.527 -2.622 -0.564 2.733 sum 2.215 -11.496 -7.532 13.921 Atomic orbital electron populations 1.70624 1.06792 1.32203 1.40960 1.26132 0.96497 1.02666 0.92349 0.83320 0.74551 0.73837 0.77241 1.20771 1.21126 1.20442 1.21486 0.94239 0.86328 1.59673 0.91030 1.22655 0.87847 0.92605 0.91028 0.87648 1.75196 1.19639 1.09589 1.07342 1.23639 0.96479 0.93836 0.96779 1.21414 0.99163 0.94343 0.92591 1.21511 0.95117 0.95953 0.99742 1.19436 1.00593 0.95068 0.96814 1.20854 0.79739 0.83566 0.78103 1.90899 1.29569 1.61449 1.58759 1.84574 1.63428 1.45575 1.38432 1.21868 0.94921 0.89977 0.92097 1.23394 0.96781 0.95584 0.94278 1.74728 1.18156 1.03430 1.16154 0.90454 0.84471 0.84149 0.72936 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.67 13.55 55.43 0.75 -24.91 15 2 C 0.03 0.95 5.41 -17.82 -0.10 0.85 15 3 Si 1.08 24.51 29.90 -169.99 -5.08 19.43 15 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.58 -16.38 9.07 -34.44 -0.31 -16.69 15 8 H 0.07 2.06 7.81 -52.49 -0.41 1.65 15 9 C 0.26 6.78 3.61 -128.16 -0.46 6.32 15 10 H 0.11 2.90 7.97 -51.93 -0.41 2.48 15 11 N -0.40 -10.09 10.35 -52.98 -0.55 -10.64 15 12 C 0.08 1.63 7.50 -80.66 -0.61 1.03 15 13 C -0.06 -0.89 10.26 -37.39 -0.38 -1.27 15 14 C -0.10 -1.33 9.63 -37.77 -0.36 -1.69 15 15 C -0.11 -1.61 5.96 -103.62 -0.62 -2.23 15 16 C 0.53 6.70 8.26 34.64 0.29 6.99 15 17 O -0.52 -7.78 17.00 -19.24 -0.33 -8.11 15 18 O -0.51 -4.49 12.64 -40.55 -0.51 -5.01 15 19 C 0.03 0.51 9.81 -36.77 -0.36 0.15 15 20 C 0.08 1.75 7.50 -80.67 -0.61 1.14 15 21 N -0.41 -9.82 11.48 -52.97 -0.61 -10.43 15 22 H 0.28 8.38 6.52 -40.82 -0.27 8.11 15 23 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 24 H 0.14 1.41 7.59 -52.49 -0.40 1.02 15 25 H 0.41 1.67 9.11 45.56 0.42 2.09 15 26 H 0.15 2.26 7.51 -52.49 -0.39 1.87 15 LS Contribution 247.84 15.07 3.73 3.73 Total: -1.00 -33.17 247.84 -6.80 -39.97 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -0.69 Total: 1.38 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -3.52 Total: -5.41 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.41 Total: -45.98 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.84 Total: -13.12 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.17 -6.80 -39.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725540015.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.962 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds