Wall clock time and date at job start Mon Mar 30 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.05625 * 301.50154 * 9 7 2 11 11 N 1.46794 * 110.07794 * 63.05952 * 9 7 2 12 12 C 1.30391 * 107.45070 * 119.22976 * 11 9 7 13 13 C 1.46894 * 132.19111 * 180.02562 * 12 11 9 14 14 C 1.34546 * 119.97055 * 180.02562 * 13 12 11 15 15 C 1.46030 * 121.92132 * 359.97438 * 14 13 12 16 16 C 1.47795 * 119.16837 * 179.97438 * 15 14 13 17 17 O 1.21467 * 120.00012 * 180.02562 * 16 15 14 18 18 O 1.34722 * 120.00333 * 0.02562 * 16 15 14 19 19 C 1.36148 * 121.66048 * 359.97438 * 15 14 13 20 20 C 1.47029 * 119.57427 * 0.02562 * 19 15 14 21 21 N 1.30234 * 132.23491 * 179.97438 * 20 19 15 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.01213 * 359.97438 * 13 12 11 24 24 H 1.08001 * 119.03735 * 180.02562 * 14 13 12 25 25 H 0.96698 * 117.00501 * 180.02562 * 18 16 15 26 26 H 1.08001 * 120.21342 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6013 -2.5511 0.8858 11 7 0.4578 -2.6293 -1.2159 12 6 0.8811 -3.6906 -1.8441 13 6 0.4740 -4.3160 -3.1094 14 6 1.0908 -5.4330 -3.5360 15 6 2.1694 -6.0580 -2.7754 16 6 2.8043 -7.2848 -3.3008 17 8 3.7025 -7.8174 -2.6803 18 8 2.3870 -7.8125 -4.4680 19 6 2.6048 -5.5390 -1.5945 20 6 1.9791 -4.3191 -1.0633 21 7 2.1937 -3.6244 0.0172 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.3207 -3.8798 -3.6965 24 1 0.7797 -5.8800 -4.4687 25 1 2.8322 -8.6157 -4.7709 26 1 3.4047 -6.0202 -1.0513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725540015.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:38 Heat of formation + Delta-G solvation = -31.887390 kcal Electronic energy + Delta-G solvation = -15012.260527 eV Core-core repulsion = 12249.069347 eV Total energy + Delta-G solvation = -2763.191180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.79262 -41.07189 -37.48103 -37.04748 -35.07221 -33.74047 -30.92801 -30.14368 -27.30378 -25.03996 -23.29205 -22.08479 -21.75742 -19.39836 -19.08322 -18.24989 -17.45067 -16.98258 -16.66713 -16.15148 -15.72833 -15.17611 -15.04676 -14.40827 -14.11485 -13.80544 -13.39143 -13.09274 -12.68705 -12.58024 -12.01549 -11.98483 -11.87493 -11.84512 -11.38099 -11.25588 -10.84209 -10.74837 -9.46394 -8.91214 -6.73318 -1.20924 0.38316 0.95862 1.46482 1.54888 1.63712 1.74888 1.81015 2.41947 2.57248 2.72926 2.99783 3.16126 3.25665 3.59208 3.94272 4.21057 4.43013 4.56850 4.67357 4.93275 5.06506 5.17416 5.31502 5.46413 5.54463 5.73006 5.81710 6.27809 6.54533 6.96250 7.14689 8.49844 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.050153 B = 0.006009 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.152692 B = 4658.768799 C = 4846.501600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.009 4.009 3 Si 1.131 2.869 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.602 4.602 8 H 0.056 0.944 9 C 0.254 3.746 10 H 0.074 0.926 11 N -0.451 5.451 12 C 0.088 3.912 13 C -0.081 4.081 14 C -0.057 4.057 15 C -0.087 4.087 16 C 0.547 3.453 17 O -0.540 6.540 18 O -0.490 6.490 19 C 0.005 3.995 20 C 0.096 3.904 21 N -0.448 5.448 22 H 0.270 0.730 23 H 0.163 0.837 24 H 0.192 0.808 25 H 0.439 0.561 26 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -13.818 -11.332 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.213 4.213 3 Si 0.950 3.050 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.641 4.641 8 H 0.074 0.926 9 C 0.056 3.944 10 H 0.090 0.910 11 N -0.168 5.168 12 C -0.097 4.097 13 C -0.100 4.100 14 C -0.079 4.079 15 C -0.093 4.093 16 C 0.392 3.608 17 O -0.431 6.431 18 O -0.304 6.304 19 C -0.014 4.014 20 C -0.089 4.089 21 N -0.165 5.165 22 H 0.081 0.919 23 H 0.181 0.819 24 H 0.209 0.791 25 H 0.302 0.698 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.248 -10.964 -9.991 15.002 hybrid contribution 0.381 -2.379 0.151 2.414 sum 2.628 -13.343 -9.840 16.786 Atomic orbital electron populations 1.70730 1.07609 1.31367 1.43329 1.27634 0.96566 1.06135 0.90951 0.82781 0.73777 0.70074 0.78419 1.18820 1.19942 1.19789 1.21645 0.93786 0.88396 1.60277 0.92608 1.22306 0.87969 0.93098 0.91006 0.90951 1.75094 1.21776 1.12447 1.07506 1.24578 0.94930 0.92247 0.97988 1.21664 1.01516 0.95784 0.91062 1.22048 0.92211 0.93563 1.00101 1.19774 0.99306 0.94959 0.95249 1.20317 0.78973 0.82695 0.78838 1.90924 1.30537 1.61887 1.59769 1.84492 1.63024 1.46836 1.36001 1.21840 0.96489 0.89175 0.93912 1.24077 0.95891 0.95994 0.92937 1.74679 1.19194 1.04157 1.18463 0.91912 0.81913 0.79091 0.69828 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.16 13.55 21.45 0.29 -54.87 15 2 C -0.01 -0.51 5.41 84.65 0.46 -0.05 15 3 Si 1.13 50.37 29.90 68.60 2.05 52.42 15 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 7 C -0.60 -36.13 9.07 25.60 0.23 -35.89 15 8 H 0.06 3.39 7.81 -2.91 -0.02 3.37 15 9 C 0.25 14.36 3.61 128.60 0.46 14.83 15 10 H 0.07 4.41 7.97 -2.39 -0.02 4.39 15 11 N -0.45 -23.78 10.35 -321.54 -3.33 -27.11 15 12 C 0.09 3.72 7.50 44.42 0.33 4.06 15 13 C -0.08 -2.32 10.26 23.69 0.24 -2.08 15 14 C -0.06 -1.20 9.63 23.45 0.23 -0.98 15 15 C -0.09 -2.11 5.96 -19.22 -0.11 -2.22 15 16 C 0.55 10.98 8.26 70.35 0.58 11.56 15 17 O -0.54 -14.16 17.00 19.94 0.34 -13.82 15 18 O -0.49 -5.41 12.64 -56.32 -0.71 -6.12 15 19 C 0.01 0.17 9.81 24.09 0.24 0.41 15 20 C 0.10 4.05 7.50 44.48 0.33 4.39 15 21 N -0.45 -22.73 11.48 -321.51 -3.69 -26.42 15 22 H 0.27 17.00 6.52 -92.70 -0.60 16.40 15 23 H 0.16 3.87 8.06 -2.91 -0.02 3.85 15 24 H 0.19 2.29 7.59 -2.91 -0.02 2.27 15 25 H 0.44 0.71 9.11 -74.06 -0.67 0.04 15 26 H 0.16 4.63 7.51 -2.91 -0.02 4.61 15 Total: -1.00 -77.75 247.84 -1.32 -79.07 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 0.73 Total: 2.83 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 2.99 Total: -5.98 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -6.73 Total: -108.40 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.37 Total: -19.94 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal Total: -77.75 -1.32 -79.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725540015.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.184 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds