Wall clock time and date at job start Mon Mar 30 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 102.99844 * 2 1 4 4 C 1.53735 * 110.83365 * 180.23835 * 3 2 1 5 5 N 1.44611 * 111.12657 * 241.29166 * 4 3 2 6 6 C 1.27423 * 120.09343 * 0.49566 * 5 4 3 7 7 C 1.50700 * 124.97369 * 179.78022 * 6 5 4 8 8 H 1.08994 * 109.47551 * 134.69398 * 7 6 5 9 9 O 1.42899 * 109.47136 * 254.69702 * 7 6 5 10 10 C 1.50702 * 109.46869 * 14.69452 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 S 1.76768 * 110.05586 * 359.51211 * 6 5 4 19 19 H 1.09003 * 109.46774 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47302 * 299.99647 * 1 2 3 21 21 H 1.08997 * 109.47207 * 60.00103 * 1 2 3 22 22 H 1.08997 * 110.61240 * 303.39465 * 3 2 1 23 23 H 1.09004 * 109.15450 * 1.96028 * 4 3 2 24 24 H 1.08994 * 109.15504 * 121.07893 * 4 3 2 25 25 H 0.96699 * 113.99712 * 59.99989 * 9 7 6 26 26 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7450 1.9771 -0.0060 5 7 4.1778 2.6889 1.1760 6 6 3.3269 3.0437 2.0556 7 6 3.6557 3.7834 3.3268 8 1 2.9430 4.5956 3.4693 9 8 3.5804 2.8838 4.4345 10 6 5.0494 4.3489 3.2327 11 1 5.6381 4.1890 2.3414 12 6 5.5708 5.0757 4.2820 13 7 6.7851 5.5738 4.1977 14 14 4.5525 5.3527 5.8233 15 1 4.8033 4.2511 6.7869 16 1 4.9335 6.6479 6.4420 17 1 3.1114 5.3797 5.4663 18 16 1.7032 2.5480 1.5630 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.7612 2.2677 -0.8518 23 1 4.2395 1.0064 -0.0441 24 1 4.0233 2.5532 -0.8884 25 1 4.1889 2.1346 4.3747 26 1 7.1520 6.0847 4.9360 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725601889.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:59 Heat of formation + Delta-G solvation = -44.247800 kcal Electronic energy + Delta-G solvation = -12284.587670 eV Core-core repulsion = 10001.338663 eV Total energy + Delta-G solvation = -2283.249007 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 233.028 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.40313 -37.54585 -34.48064 -32.46598 -29.97474 -29.43116 -26.43619 -24.42970 -21.07203 -19.85419 -18.45219 -17.73994 -17.02381 -16.83943 -16.41110 -15.65970 -15.29312 -15.02895 -14.79262 -14.35679 -14.11895 -13.68694 -13.38926 -13.04612 -12.76723 -12.31795 -12.11156 -11.89927 -11.47642 -11.35011 -11.01325 -10.86322 -10.13064 -9.13812 -8.66801 -8.33880 -6.50517 0.23102 0.28873 0.72439 0.89489 1.39082 1.44473 1.47444 1.60413 2.38353 2.95493 3.00507 3.17741 3.68520 3.84420 4.26923 4.29131 4.32898 4.33903 4.56862 4.83978 5.02046 5.27920 6.11205 6.47339 6.71891 6.94349 7.25532 8.79713 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.053394 B = 0.007282 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.273768 B = 3844.248274 C = 4148.214325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.222 6.222 3 C -0.047 4.047 4 C 0.050 3.950 5 N -0.510 5.510 6 C 0.198 3.802 7 C 0.263 3.737 8 H 0.085 0.915 9 O -0.569 6.569 10 C -0.550 4.550 11 H 0.058 0.942 12 C 0.036 3.964 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.299 1.299 17 H -0.257 1.257 18 S -0.219 6.219 19 H 0.124 0.876 20 H 0.078 0.922 21 H 0.095 0.905 22 H 0.150 0.850 23 H 0.114 0.886 24 H 0.129 0.871 25 H 0.380 0.620 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 -9.546 -8.432 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S 0.003 5.997 3 C -0.289 4.289 4 C -0.083 4.083 5 N -0.224 5.224 6 C -0.104 4.104 7 C 0.201 3.799 8 H 0.103 0.897 9 O -0.375 6.375 10 C -0.589 4.589 11 H 0.076 0.924 12 C -0.165 4.165 13 N -0.570 5.570 14 Si 0.793 3.207 15 H -0.197 1.197 16 H -0.227 1.227 17 H -0.181 1.181 18 S 0.009 5.991 19 H 0.143 0.857 20 H 0.097 0.903 21 H 0.114 0.886 22 H 0.167 0.833 23 H 0.131 0.869 24 H 0.147 0.853 25 H 0.229 0.771 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.966 -9.813 -7.944 18.097 hybrid contribution 0.066 0.737 -0.188 0.763 sum -12.900 -9.076 -8.133 17.746 Atomic orbital electron populations 1.23585 0.91032 1.08146 1.06082 1.86930 1.10992 1.05666 1.96145 1.26546 1.03289 0.99226 0.99824 1.23039 0.88943 1.01208 0.95100 1.69975 1.35795 1.13038 1.03614 1.28497 0.88514 0.95084 0.98298 1.18540 0.96545 0.87099 0.77680 0.89743 1.86393 1.65666 1.40454 1.45012 1.21573 0.99118 1.34234 1.04017 0.92355 1.25750 0.95679 0.93409 1.01664 1.70041 1.17309 1.35798 1.33817 0.85412 0.79774 0.76319 0.79201 1.19727 1.22654 1.18116 1.86668 1.18120 1.70300 1.23992 0.85746 0.90284 0.88616 0.83251 0.86860 0.85307 0.77145 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 10.65 113.37 1.21 -0.70 15 2 S -0.22 -5.08 21.61 -56.19 -1.21 -6.30 15 3 C -0.05 -1.21 3.91 72.23 0.28 -0.93 15 4 C 0.05 1.47 7.28 86.98 0.63 2.10 15 5 N -0.51 -20.71 9.58 -338.06 -3.24 -23.95 15 6 C 0.20 8.16 6.93 88.75 0.61 8.78 15 7 C 0.26 12.29 2.84 29.10 0.08 12.37 15 8 H 0.09 3.96 7.19 -2.39 -0.02 3.95 15 9 O -0.57 -25.02 11.03 -148.98 -1.64 -26.66 15 10 C -0.55 -30.71 9.20 25.60 0.24 -30.48 15 11 H 0.06 3.63 7.22 -2.91 -0.02 3.61 15 12 C 0.04 2.05 5.47 84.66 0.46 2.51 15 13 N -0.93 -56.81 13.96 21.45 0.30 -56.51 15 14 Si 0.97 45.95 26.18 68.60 1.80 47.74 15 15 H -0.27 -12.69 7.11 99.48 0.71 -11.98 15 16 H -0.30 -13.97 7.11 99.48 0.71 -13.26 15 17 H -0.26 -11.71 6.54 99.48 0.65 -11.06 15 18 S -0.22 -7.20 22.51 -56.19 -1.26 -8.47 15 19 H 0.12 1.50 8.14 -2.39 -0.02 1.48 15 20 H 0.08 1.42 8.04 -2.39 -0.02 1.40 15 21 H 0.09 1.20 8.14 -2.39 -0.02 1.19 15 22 H 0.15 3.07 8.14 -2.39 -0.02 3.05 15 23 H 0.11 3.21 7.59 -2.39 -0.02 3.19 15 24 H 0.13 3.27 8.14 -2.39 -0.02 3.25 15 25 H 0.38 15.05 9.03 -74.06 -0.67 14.38 15 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 15 Total: -1.00 -65.37 251.85 -1.28 -66.65 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.47 Total: 13.83 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 3.52 Total: -6.35 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.94 Total: -80.46 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.64 Total: -26.66 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.80 Total: 47.74 kcal Atomic # 16 Polarization: -12.28 SS G_CDS: -2.48 Total: -14.76 kcal Total: -65.37 -1.28 -66.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725601889.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.404 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds