Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28593 * 124.62034 * 2 1 4 4 C 1.31376 * 108.72275 * 179.97438 * 3 2 1 5 5 C 1.39681 * 105.89958 * 359.97438 * 4 3 2 6 6 S 1.76197 * 127.04983 * 179.97438 * 5 4 3 7 7 O 1.42092 * 106.40316 * 336.45746 * 6 5 4 8 8 O 1.42104 * 106.39829 * 203.54091 * 6 5 4 9 9 N 1.65594 * 107.21938 * 90.00225 * 6 5 4 10 10 C 1.36935 * 120.00276 * 64.99776 * 9 6 5 11 11 H 1.08005 * 119.99877 * 359.97438 * 10 9 6 12 12 C 1.38811 * 120.00369 * 179.72962 * 10 9 6 13 13 N 1.31614 * 120.00468 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99699 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47209 * 90.00536 * 14 12 10 16 16 H 1.48506 * 109.47294 * 210.00384 * 14 12 10 17 17 H 1.48501 * 109.47275 * 330.00287 * 14 12 10 18 18 N 1.28601 * 124.61955 * 180.25181 * 2 1 3 19 19 H 1.08999 * 109.47097 * 90.02467 * 1 2 3 20 20 H 1.09000 * 109.46698 * 210.02439 * 1 2 3 21 21 H 1.09001 * 109.47270 * 330.02013 * 1 2 3 22 22 H 1.07999 * 127.05574 * 179.97438 * 4 3 2 23 23 H 0.97005 * 119.99910 * 244.99843 * 9 6 5 24 24 H 0.97000 * 120.00663 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0582 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4592 -0.6984 0.0015 6 16 4.8654 -1.7600 0.0020 7 8 5.9385 -1.0047 -0.5432 8 8 4.4326 -2.9996 -0.5416 9 7 5.2570 -2.0543 1.5838 10 6 4.3893 -2.7452 2.3868 11 1 3.4493 -3.0979 1.9886 12 6 4.7199 -2.9968 3.7113 13 7 3.8862 -3.6614 4.4830 14 14 6.3490 -2.3934 4.3980 15 1 6.1747 -1.0299 4.9600 16 1 6.8068 -3.3152 5.4685 17 1 7.3606 -2.3554 3.3115 18 7 2.1956 -1.0583 -0.0047 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5135 22 1 4.3211 1.3490 0.0003 23 1 6.1010 -1.7372 1.9416 24 1 4.1174 -3.8375 5.4084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725613318.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = 12.846213 kcal Electronic energy + Delta-G solvation = -14419.200174 eV Core-core repulsion = 11689.852397 eV Total energy + Delta-G solvation = -2729.347777 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 232.042 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.71644 -38.12592 -36.80673 -36.61802 -34.88159 -33.70860 -33.43020 -28.90500 -26.19431 -24.62443 -23.12822 -20.79496 -20.16841 -19.08504 -18.40056 -17.86919 -17.50547 -16.75083 -16.07598 -15.81097 -15.00887 -14.57958 -14.05629 -13.89520 -13.52744 -13.26560 -13.11471 -13.06728 -12.90416 -12.40549 -12.22377 -12.11623 -12.01339 -11.90787 -11.66652 -10.72596 -10.41598 -8.32243 -5.96660 -0.48929 0.39205 0.91449 1.39742 1.40395 1.42879 1.49615 2.30878 2.36076 2.80747 2.90136 3.12955 3.67250 3.96077 4.23231 4.23759 4.47653 4.69544 4.78708 4.99096 5.50098 5.72067 6.35596 6.93079 6.96509 7.12937 8.82726 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.010630 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.419326 B = 2633.328528 C = 3060.946588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.139 5.139 3 N -0.300 5.300 4 C 0.052 3.948 5 C -0.568 4.568 6 S 2.722 3.278 7 O -0.977 6.977 8 O -0.981 6.981 9 N -0.982 5.982 10 C -0.305 4.305 11 H 0.087 0.913 12 C -0.004 4.004 13 N -0.932 5.932 14 Si 0.940 3.060 15 H -0.259 1.259 16 H -0.277 1.277 17 H -0.238 1.238 18 N -0.208 5.208 19 H 0.120 0.880 20 H 0.114 0.886 21 H 0.131 0.869 22 H 0.241 0.759 23 H 0.403 0.597 24 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 9.822 -5.630 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.044 5.044 3 N -0.140 5.140 4 C -0.131 4.131 5 C -0.807 4.807 6 S 2.805 3.195 7 O -0.966 6.966 8 O -0.971 6.971 9 N -0.738 5.738 10 C -0.439 4.439 11 H 0.105 0.895 12 C -0.206 4.206 13 N -0.574 5.574 14 Si 0.762 3.238 15 H -0.183 1.183 16 H -0.202 1.202 17 H -0.162 1.162 18 N -0.056 5.056 19 H 0.138 0.862 20 H 0.133 0.867 21 H 0.149 0.851 22 H 0.258 0.742 23 H 0.240 0.760 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.943 9.460 -6.357 12.060 hybrid contribution 0.945 0.451 1.064 1.493 sum -2.998 9.911 -5.293 11.629 Atomic orbital electron populations 1.22832 0.67140 1.08036 1.07478 1.49155 1.11056 0.98989 1.45245 1.73982 1.03904 1.15739 1.20342 1.25067 0.95949 0.92138 0.99933 1.36507 1.11811 1.11217 1.21193 1.01831 0.72038 0.72950 0.72675 1.93494 1.52152 1.73023 1.77929 1.93494 1.83131 1.42659 1.77805 1.51607 1.25744 1.64970 1.31526 1.18699 1.01322 1.30262 0.93580 0.89499 1.25853 1.01862 0.97170 0.95671 1.69850 1.38004 1.41738 1.07837 0.85669 0.79413 0.79212 0.79507 1.18314 1.20243 1.16176 1.74107 1.02567 1.16695 1.12224 0.86200 0.86703 0.85116 0.74247 0.76036 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 11.57 127.77 1.48 3.00 14 2 N -0.14 -4.46 4.35 -206.55 -0.90 -5.36 14 3 N -0.30 -9.62 12.05 -56.86 -0.69 -10.30 14 4 C 0.05 1.73 12.05 85.11 1.03 2.75 14 5 C -0.57 -22.44 7.30 85.11 0.62 -21.81 14 6 S 2.72 115.07 5.87 -56.49 -0.33 114.73 14 7 O -0.98 -39.42 17.91 -128.00 -2.29 -41.71 14 8 O -0.98 -48.50 17.72 -128.00 -2.27 -50.77 14 9 N -0.98 -44.15 5.55 -54.26 -0.30 -44.45 14 10 C -0.30 -16.30 10.12 84.03 0.85 -15.45 14 11 H 0.09 5.17 8.05 -2.91 -0.02 5.15 14 12 C 0.00 -0.22 5.50 84.86 0.47 0.25 14 13 N -0.93 -53.88 13.97 21.65 0.30 -53.58 14 14 Si 0.94 39.17 27.73 68.60 1.90 41.08 14 15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 14 16 H -0.28 -11.51 7.11 99.48 0.71 -10.80 14 17 H -0.24 -8.83 6.52 99.48 0.65 -8.18 14 18 N -0.21 -8.32 12.05 -54.82 -0.66 -8.99 14 19 H 0.12 1.55 8.14 -2.39 -0.02 1.54 14 20 H 0.11 1.98 8.14 -2.39 -0.02 1.96 14 21 H 0.13 1.70 8.14 -2.39 -0.02 1.68 14 22 H 0.24 5.81 8.06 -2.91 -0.02 5.79 14 23 H 0.40 16.11 5.89 -96.74 -0.57 15.54 14 24 H 0.28 14.80 8.31 -92.71 -0.77 14.03 14 Total: -1.00 -73.24 239.20 -0.17 -73.42 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.62 Total: 17.20 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.44 Total: -31.27 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -2.24 Total: -122.69 kcal Atomic # 8 Polarization: -87.92 SS G_CDS: -4.56 Total: -92.48 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.90 Total: 41.08 kcal Atomic # 16 Polarization: 115.07 SS G_CDS: -0.33 Total: 114.73 kcal Total: -73.24 -0.17 -73.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725613318.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.265 kcal (2) G-P(sol) polarization free energy of solvation -73.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds