Wall clock time and date at job start Mon Mar 30 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99636 * 2 1 4 4 H 1.48503 * 109.47070 * 239.99455 * 3 2 1 5 5 H 1.48496 * 109.47572 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46927 * 120.00027 * 3 2 1 7 7 C 1.37882 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99514 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.66684 * 57.06242 * 9 7 2 11 11 C 1.55019 * 110.60652 * 179.97438 * 9 7 2 12 12 C 1.54878 * 102.12833 * 155.40049 * 11 9 7 13 13 C 1.53841 * 104.06300 * 339.06539 * 12 11 9 14 14 C 1.52774 * 114.50173 * 229.32599 * 13 12 11 15 15 S 1.81466 * 89.82364 * 210.04101 * 14 13 12 16 16 O 1.42102 * 112.74461 * 280.23755 * 15 14 13 17 17 O 1.42098 * 112.75094 * 136.51458 * 15 14 13 18 18 C 1.52755 * 114.53845 * 127.10090 * 13 12 11 19 19 O 1.43435 * 107.63088 * 358.17530 * 13 12 11 20 20 H 0.96997 * 119.99741 * 0.02562 * 1 2 3 21 21 H 1.09002 * 110.90629 * 37.18273 * 11 9 7 22 22 H 1.08997 * 110.90400 * 273.61537 * 11 9 7 23 23 H 1.09007 * 110.51482 * 97.71064 * 12 11 9 24 24 H 1.09005 * 110.51603 * 220.28374 * 12 11 9 25 25 H 1.08998 * 113.15729 * 325.27880 * 14 13 12 26 26 H 1.08994 * 113.16096 * 94.79883 * 14 13 12 27 27 H 1.09002 * 113.15427 * 265.16641 * 18 13 12 28 28 H 1.08998 * 113.15794 * 34.68451 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.5789 -2.5552 -0.8557 11 6 2.2350 -3.6971 0.0005 12 6 1.3775 -4.8223 0.6309 13 6 0.2715 -4.0689 1.3897 14 6 0.0682 -4.5272 2.8328 15 16 -1.6865 -4.0778 2.7224 16 8 -1.9079 -2.6837 2.8856 17 8 -2.5417 -5.0572 3.2957 18 6 -1.1492 -4.5112 1.0442 19 8 0.5179 -2.6644 1.2352 20 1 -0.4849 0.8400 -0.0004 21 1 3.1088 -3.4828 0.6159 22 1 2.5314 -3.9569 -1.0157 23 1 0.9457 -5.4540 -0.1455 24 1 1.9765 -5.4195 1.3184 25 1 0.2290 -5.5966 2.9697 26 1 0.6200 -3.9260 3.5553 27 1 -1.6139 -3.8965 0.2732 28 1 -1.2265 -5.5774 0.8313 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725614321.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:26 Heat of formation + Delta-G solvation = -87.246287 kcal Electronic energy + Delta-G solvation = -15069.997635 eV Core-core repulsion = 12407.557114 eV Total energy + Delta-G solvation = -2662.440521 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.05258 -36.78670 -35.60358 -34.10509 -32.15966 -31.08652 -27.04713 -26.38009 -23.48075 -20.53322 -19.70188 -18.28837 -16.76776 -16.19657 -15.88433 -15.70823 -14.85948 -14.76434 -14.40672 -13.57698 -13.13713 -12.55605 -12.33474 -11.94355 -11.78034 -11.74867 -11.59811 -11.54932 -10.92303 -10.71967 -10.50020 -10.26467 -9.98038 -9.86894 -9.71521 -9.20803 -8.68790 -8.29599 -6.07530 -4.21955 0.59941 2.42129 3.30487 3.36288 3.37691 4.03890 4.28511 4.38731 4.60001 4.79135 5.26671 5.37508 5.41590 5.43744 5.72349 5.75732 5.86296 6.13199 6.17001 6.32148 6.50369 6.63082 6.69599 7.37547 7.82993 8.07729 8.35818 8.87334 9.49712 11.00101 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.009377 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.626646 B = 2985.170713 C = 3516.419678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.078 3.922 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.208 3.792 10 H 0.035 0.965 11 C -0.149 4.149 12 C -0.123 4.123 13 C 0.118 3.882 14 C -0.595 4.595 15 S 2.403 3.597 16 O -0.889 6.889 17 O -0.950 6.950 18 C -0.615 4.615 19 O -0.325 6.325 20 H 0.266 0.734 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 -9.781 2.285 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.154 3.846 10 H 0.052 0.948 11 C -0.187 4.187 12 C -0.162 4.162 13 C 0.073 3.927 14 C -0.724 4.724 15 S 2.585 3.415 16 O -0.886 6.886 17 O -0.947 6.947 18 C -0.744 4.744 19 O -0.244 6.244 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.158 0.842 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.480 -9.125 3.086 9.746 hybrid contribution 1.378 0.347 -0.737 1.600 sum -0.102 -8.778 2.350 9.088 Atomic orbital electron populations 1.69989 1.06050 1.27260 1.45882 1.25124 0.94849 0.99556 0.93442 0.86612 0.79654 0.82713 0.78716 1.20072 1.21060 1.19974 1.20913 0.92733 0.89469 1.54100 0.91606 1.20851 0.87691 0.92684 0.83412 0.94753 1.23240 0.99672 0.95937 0.99829 1.22614 0.96267 0.98266 0.99089 1.21238 0.91997 0.88783 0.90650 1.31095 1.26860 1.09992 1.04456 1.08472 0.77641 0.75344 0.80003 1.93776 1.83871 1.27739 1.83242 1.93576 1.64256 1.61594 1.75318 1.31442 1.08013 1.10101 1.24863 1.89370 1.75964 1.14269 1.44783 0.92453 0.91415 0.91796 0.91175 0.91174 0.84202 0.85322 0.85172 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.35 13.13 55.43 0.73 -24.62 15 2 C 0.08 2.18 5.44 -17.82 -0.10 2.08 15 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.54 -14.72 8.82 -34.44 -0.30 -15.02 15 8 H 0.07 1.74 7.77 -52.49 -0.41 1.33 15 9 C 0.21 5.19 3.10 -26.82 -0.08 5.11 15 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 15 11 C -0.15 -2.93 6.55 -24.67 -0.16 -3.09 15 12 C -0.12 -2.02 6.47 -25.30 -0.16 -2.19 15 13 C 0.12 2.17 1.26 -90.42 -0.11 2.06 15 14 C -0.60 -8.71 7.30 37.04 0.27 -8.44 15 15 S 2.40 38.16 7.51 -107.50 -0.81 37.36 15 16 O -0.89 -18.79 17.84 -59.09 -1.05 -19.84 15 17 O -0.95 -15.89 18.18 -57.30 -1.04 -16.94 15 18 C -0.61 -9.47 7.29 37.03 0.27 -9.20 15 19 O -0.32 -8.05 10.31 -35.45 -0.37 -8.42 15 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.07 1.33 8.04 -51.93 -0.42 0.91 15 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.07 1.01 7.91 -51.93 -0.41 0.59 15 24 H 0.07 0.99 7.93 -51.93 -0.41 0.58 15 25 H 0.14 1.53 8.14 -51.93 -0.42 1.11 15 26 H 0.13 1.87 8.14 -51.93 -0.42 1.45 15 27 H 0.13 2.13 8.14 -51.93 -0.42 1.71 15 28 H 0.14 1.60 8.14 -51.93 -0.42 1.18 15 LS Contribution 252.86 15.07 3.81 3.81 Total: -1.00 -34.75 252.86 -7.45 -42.20 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -3.32 Total: -1.07 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -0.38 Total: -28.69 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.73 Total: -24.62 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.46 Total: -45.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 38.16 SS G_CDS: -0.81 Total: 37.36 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -34.75 -7.45 -42.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725614321.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.045 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds