Wall clock time and date at job start Mon Mar 30 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99636 * 2 1 4 4 H 1.48503 * 109.47070 * 239.99455 * 3 2 1 5 5 H 1.48496 * 109.47572 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46927 * 120.00027 * 3 2 1 7 7 C 1.37882 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99514 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.66684 * 57.06242 * 9 7 2 11 11 C 1.55019 * 110.60652 * 179.97438 * 9 7 2 12 12 C 1.54878 * 102.12833 * 155.40049 * 11 9 7 13 13 C 1.53841 * 104.06300 * 339.06539 * 12 11 9 14 14 C 1.52774 * 114.50173 * 229.32599 * 13 12 11 15 15 S 1.81466 * 89.82364 * 210.04101 * 14 13 12 16 16 O 1.42102 * 112.74461 * 280.23755 * 15 14 13 17 17 O 1.42098 * 112.75094 * 136.51458 * 15 14 13 18 18 C 1.52755 * 114.53845 * 127.10090 * 13 12 11 19 19 O 1.43435 * 107.63088 * 358.17530 * 13 12 11 20 20 H 0.96997 * 119.99741 * 0.02562 * 1 2 3 21 21 H 1.09002 * 110.90629 * 37.18273 * 11 9 7 22 22 H 1.08997 * 110.90400 * 273.61537 * 11 9 7 23 23 H 1.09007 * 110.51482 * 97.71064 * 12 11 9 24 24 H 1.09005 * 110.51603 * 220.28374 * 12 11 9 25 25 H 1.08998 * 113.15729 * 325.27880 * 14 13 12 26 26 H 1.08994 * 113.16096 * 94.79883 * 14 13 12 27 27 H 1.09002 * 113.15427 * 265.16641 * 18 13 12 28 28 H 1.08998 * 113.15794 * 34.68451 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.5789 -2.5552 -0.8557 11 6 2.2350 -3.6971 0.0005 12 6 1.3775 -4.8223 0.6309 13 6 0.2715 -4.0689 1.3897 14 6 0.0682 -4.5272 2.8328 15 16 -1.6865 -4.0778 2.7224 16 8 -1.9079 -2.6837 2.8856 17 8 -2.5417 -5.0572 3.2957 18 6 -1.1492 -4.5112 1.0442 19 8 0.5179 -2.6644 1.2352 20 1 -0.4849 0.8400 -0.0004 21 1 3.1088 -3.4828 0.6159 22 1 2.5314 -3.9569 -1.0157 23 1 0.9457 -5.4540 -0.1455 24 1 1.9765 -5.4195 1.3184 25 1 0.2290 -5.5966 2.9697 26 1 0.6200 -3.9260 3.5553 27 1 -1.6139 -3.8965 0.2732 28 1 -1.2265 -5.5774 0.8313 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725614321.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:25 Heat of formation + Delta-G solvation = -115.008698 kcal Electronic energy + Delta-G solvation = -15071.201504 eV Core-core repulsion = 12407.557114 eV Total energy + Delta-G solvation = -2663.644390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58201 -38.17690 -37.01153 -35.74519 -34.10243 -32.66014 -28.88367 -27.60508 -25.23134 -22.25214 -21.10811 -19.60474 -18.73229 -17.59233 -17.29180 -17.04747 -16.57342 -16.41445 -16.02635 -15.18829 -14.51266 -14.04742 -13.81519 -13.63019 -13.27402 -13.13980 -13.07368 -12.99779 -12.77877 -12.42216 -12.18326 -12.07296 -11.39519 -11.23345 -11.07102 -11.03968 -10.72123 -10.12632 -8.17825 -6.38641 -0.68899 1.17985 1.40759 1.43874 1.51674 2.40044 2.72932 2.90156 3.21362 3.33671 3.53346 3.93702 4.03055 4.33084 4.45845 4.46715 4.57850 4.78285 4.85209 4.91590 5.03483 5.15796 5.25402 5.53507 5.73693 6.12677 6.51034 6.86619 7.37589 8.89955 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.009377 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.626646 B = 2985.170713 C = 3516.419678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.021 3.979 3 Si 0.962 3.038 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.196 3.804 10 H 0.002 0.998 11 C -0.143 4.143 12 C -0.112 4.112 13 C 0.085 3.915 14 C -0.569 4.569 15 S 2.415 3.585 16 O -0.954 6.954 17 O -0.957 6.957 18 C -0.602 4.602 19 O -0.367 6.367 20 H 0.263 0.737 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.192 0.808 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 -11.979 2.537 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.182 4.182 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.141 3.859 10 H 0.020 0.980 11 C -0.181 4.181 12 C -0.151 4.151 13 C 0.041 3.959 14 C -0.699 4.699 15 S 2.601 3.399 16 O -0.951 6.951 17 O -0.954 6.954 18 C -0.732 4.732 19 O -0.286 6.286 20 H 0.071 0.929 21 H 0.083 0.917 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.123 0.877 25 H 0.209 0.791 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.133 -11.328 3.348 11.813 hybrid contribution 0.963 0.910 -0.826 1.561 sum 0.830 -10.418 2.522 10.751 Atomic orbital electron populations 1.70145 1.07758 1.27760 1.48017 1.26019 0.95617 1.03371 0.93210 0.85572 0.78359 0.78215 0.79240 1.18496 1.21107 1.19511 1.21417 0.93268 0.91177 1.53289 0.91254 1.20726 0.88295 0.94080 0.82761 0.97986 1.23130 0.98763 0.95018 1.01221 1.22658 0.95143 0.97276 1.00062 1.21740 0.94167 0.86287 0.93695 1.31030 1.23952 1.12979 1.01946 1.07890 0.78301 0.73648 0.80021 1.93698 1.85317 1.31627 1.84457 1.93557 1.65265 1.60954 1.75672 1.31467 1.05588 1.12661 1.23527 1.89246 1.76476 1.18785 1.44105 0.92859 0.91688 0.90271 0.88498 0.87712 0.79100 0.85244 0.86925 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.42 13.13 21.45 0.28 -55.14 15 2 C 0.02 1.18 5.44 84.66 0.46 1.64 15 3 Si 0.96 44.35 29.54 68.60 2.03 46.38 15 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 7 C -0.55 -31.05 8.82 25.60 0.23 -30.82 15 8 H 0.07 3.69 7.77 -2.91 -0.02 3.67 15 9 C 0.20 9.94 3.10 30.54 0.09 10.03 15 10 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 11 C -0.14 -5.37 6.55 31.93 0.21 -5.16 15 12 C -0.11 -3.22 6.47 31.52 0.20 -3.01 15 13 C 0.08 2.92 1.26 -10.67 -0.01 2.91 15 14 C -0.57 -14.61 7.30 71.91 0.52 -14.09 15 15 S 2.42 74.10 7.51 -56.49 -0.42 73.67 15 16 O -0.95 -41.77 17.84 -126.17 -2.25 -44.02 15 17 O -0.96 -30.16 18.18 -127.88 -2.32 -32.49 15 18 C -0.60 -17.15 7.29 71.90 0.52 -16.63 15 19 O -0.37 -18.34 10.31 -148.78 -1.53 -19.88 15 20 H 0.26 15.42 8.31 -92.71 -0.77 14.65 15 21 H 0.06 2.43 8.04 -2.39 -0.02 2.41 15 22 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.10 2.26 7.91 -2.38 -0.02 2.25 15 24 H 0.10 2.30 7.93 -2.38 -0.02 2.29 15 25 H 0.19 2.95 8.14 -2.39 -0.02 2.93 15 26 H 0.13 3.42 8.14 -2.39 -0.02 3.40 15 27 H 0.11 3.68 8.14 -2.39 -0.02 3.66 15 28 H 0.19 3.38 8.14 -2.39 -0.02 3.36 15 Total: -1.00 -78.71 252.86 -0.84 -79.55 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.15 Total: 7.06 kcal Atomic # 6 Polarization: -57.37 SS G_CDS: 2.23 Total: -55.14 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -90.27 SS G_CDS: -6.11 Total: -96.38 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.42 Total: 73.67 kcal Total: -78.71 -0.84 -79.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725614321.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.455 kcal (2) G-P(sol) polarization free energy of solvation -78.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds