Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99871 * 2 1 4 4 H 1.48503 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47107 * 300.00339 * 3 2 1 6 6 H 1.48501 * 109.46658 * 60.00532 * 3 2 1 7 7 C 1.37881 * 120.00527 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00678 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99468 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47048 * 180.02562 * 9 7 2 11 11 C 1.34620 * 124.46280 * 89.99479 * 10 9 7 12 12 O 1.21412 * 125.75555 * 0.04355 * 11 10 9 13 13 C 1.47794 * 108.48024 * 180.02562 * 11 10 9 14 14 C 1.38518 * 135.50554 * 180.02562 * 13 11 10 15 15 C 1.38929 * 118.63573 * 179.97438 * 14 13 11 16 16 N 1.31779 * 121.20589 * 0.02562 * 15 14 13 17 17 C 1.32101 * 122.34674 * 359.97438 * 16 15 14 18 18 C 1.38582 * 120.25047 * 0.25951 * 17 16 15 19 19 C 1.34586 * 124.45263 * 270.01983 * 10 9 7 20 20 O 1.21441 * 125.66876 * 359.97438 * 19 10 9 21 21 H 0.96998 * 120.00510 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47966 * 59.99783 * 9 7 2 23 23 H 1.09004 * 109.47339 * 299.99535 * 9 7 2 24 24 H 1.08002 * 120.68059 * 0.02562 * 14 13 11 25 25 H 1.08003 * 119.39704 * 179.97438 * 15 14 13 26 26 H 1.08002 * 119.87065 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6127 -0.0015 11 6 2.6974 -4.1921 1.1086 12 8 2.4290 -3.8807 2.2510 13 6 3.6215 -5.2715 0.7019 14 6 4.4119 -6.1970 1.3633 15 6 5.1710 -7.0836 0.6098 16 7 5.1480 -7.0537 -0.7074 17 6 4.4105 -6.1900 -1.3820 18 6 3.6263 -5.2664 -0.7093 19 6 2.6991 -4.1906 -1.1111 20 8 2.4316 -3.8763 -2.2532 21 1 -0.4851 0.8400 0.0004 22 1 0.6247 -2.5564 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 4.4368 -6.2292 2.4425 25 1 5.7920 -7.8101 1.1129 26 1 4.4223 -6.2007 -2.4619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070906526.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = -6.509105 kcal Electronic energy + Delta-G solvation = -15390.935494 eV Core-core repulsion = 12628.844799 eV Total energy + Delta-G solvation = -2762.090695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.00155 -39.27714 -38.09454 -35.40527 -33.60691 -32.24358 -31.50222 -28.07520 -25.24296 -24.73727 -22.52844 -22.30625 -19.67329 -17.78888 -17.17375 -16.93555 -16.22722 -15.68599 -15.24610 -15.04155 -14.31797 -14.23835 -13.90629 -13.78129 -13.48817 -12.48925 -12.38778 -11.67836 -11.23397 -10.85952 -10.55851 -10.38654 -10.17247 -10.09636 -9.96680 -9.57827 -9.46467 -8.73257 -8.61202 -6.23625 -4.30101 0.06417 0.72266 2.24938 2.97019 3.23212 3.29992 3.35290 3.46676 3.62143 3.73240 4.14827 4.31618 4.45923 4.60618 4.76093 5.01895 5.13111 5.45690 5.53814 5.69033 6.22715 6.34687 6.62883 7.06314 7.51927 7.58544 7.68830 7.70867 7.90174 8.21007 8.71358 9.35787 10.85694 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.039127 B = 0.007288 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.447753 B = 3840.974209 C = 4050.142789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.242 3.758 10 N -0.553 5.553 11 C 0.567 3.433 12 O -0.456 6.456 13 C -0.088 4.088 14 C -0.108 4.108 15 C 0.124 3.876 16 N -0.473 5.473 17 C 0.167 3.833 18 C -0.190 4.190 19 C 0.573 3.427 20 O -0.457 6.457 21 H 0.267 0.733 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.153 0.847 25 H 0.172 0.828 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -12.656 1.112 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.126 3.874 10 N -0.293 5.293 11 C 0.353 3.647 12 O -0.327 6.327 13 C -0.099 4.099 14 C -0.128 4.128 15 C -0.036 4.036 16 N -0.182 5.182 17 C 0.012 3.988 18 C -0.196 4.196 19 C 0.359 3.641 20 O -0.329 6.329 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.170 0.830 25 H 0.189 0.811 26 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.230 -12.671 0.630 15.122 hybrid contribution -0.105 1.596 0.531 1.685 sum 8.125 -11.075 1.162 13.784 Atomic orbital electron populations 1.69921 1.06046 1.27546 1.49143 1.24906 0.94982 0.99463 0.94309 0.86305 0.79951 0.82597 0.77828 1.19635 1.20580 1.20599 1.21274 0.93499 0.89997 1.53056 0.92017 1.19741 0.86641 0.80758 1.00274 1.47065 1.42464 1.33446 1.06279 1.18152 0.80057 0.81277 0.85173 1.90762 1.58310 1.64118 1.19466 1.21271 0.97163 0.96630 0.94883 1.21842 0.94851 0.93702 1.02435 1.23204 0.95000 0.95917 0.89487 1.67845 1.18861 1.21776 1.09719 1.22403 0.88248 0.87261 1.00903 1.21953 1.01781 1.00286 0.95535 1.18023 0.79864 0.81088 0.85077 1.90764 1.58615 1.64018 1.19478 0.92298 0.92556 0.92648 0.82960 0.81069 0.80950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 15 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 15 3 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.54 -15.23 9.39 -34.44 -0.32 -15.55 15 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 9 C 0.24 6.29 5.50 -5.19 -0.03 6.26 15 10 N -0.55 -12.22 2.61 -118.96 -0.31 -12.53 15 11 C 0.57 11.37 8.03 -12.42 -0.10 11.27 15 12 O -0.46 -10.16 17.68 5.44 0.10 -10.06 15 13 C -0.09 -1.36 6.48 -104.79 -0.68 -2.04 15 14 C -0.11 -1.21 10.17 -39.22 -0.40 -1.61 15 15 C 0.12 1.19 11.19 -17.32 -0.19 0.99 15 16 N -0.47 -5.57 10.33 -12.95 -0.13 -5.70 15 17 C 0.17 2.13 11.24 -17.31 -0.19 1.94 15 18 C -0.19 -2.99 6.45 -104.86 -0.68 -3.67 15 19 C 0.57 11.55 8.01 -12.53 -0.10 11.45 15 20 O -0.46 -10.25 17.68 5.42 0.10 -10.15 15 21 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.06 1.53 7.97 -51.93 -0.41 1.12 15 23 H 0.06 1.50 7.97 -51.93 -0.41 1.09 15 24 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 25 H 0.17 0.94 8.06 -52.48 -0.42 0.52 15 26 H 0.17 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 250.58 15.07 3.78 3.78 Total: -1.00 -32.15 250.58 -5.19 -37.35 By element: Atomic # 1 Polarization: -3.40 SS G_CDS: -1.64 Total: -5.04 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.79 Total: 10.83 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.29 Total: -43.26 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.19 Total: -20.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.15 -5.19 -37.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070906526.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.836 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds