Wall clock time and date at job start Mon Mar 30 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30708 * 1 3 3 Si 1.86795 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47261 * 275.44795 * 3 2 1 5 5 H 1.48502 * 109.46966 * 35.44443 * 3 2 1 6 6 H 1.48501 * 109.47119 * 155.44514 * 3 2 1 7 7 C 1.40157 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99960 * 342.11627 * 7 2 1 9 9 C 1.40568 * 119.99890 * 162.12278 * 7 2 1 10 10 C 1.46719 * 120.89815 * 330.44383 * 9 7 2 11 11 C 1.34321 * 119.42375 * 180.02562 * 10 9 7 12 12 N 1.36952 * 121.30100 * 359.97438 * 11 10 9 13 13 N 1.40265 * 131.10679 * 180.02562 * 12 11 10 14 14 C 1.30792 * 109.74165 * 179.97438 * 13 12 11 15 15 C 1.40334 * 108.85887 * 359.78993 * 14 13 12 16 16 C 1.46603 * 126.59548 * 180.24937 * 15 14 13 17 17 O 1.21626 * 119.99624 * 180.10728 * 16 15 14 18 18 O 1.34886 * 120.00061 * 0.10726 * 16 15 14 19 19 C 1.36823 * 121.13110 * 0.02562 * 12 11 10 20 20 C 1.39101 * 121.02044 * 0.02562 * 19 12 11 21 21 H 0.96992 * 119.99696 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.29017 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.34532 * 179.97438 * 11 10 9 24 24 H 1.07995 * 125.56606 * 179.97438 * 14 13 12 25 25 H 0.96703 * 117.00163 * 180.02562 * 18 16 15 26 26 H 1.07996 * 120.53530 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.3735 2.1128 -1.3937 5 1 1.5008 2.6167 0.8119 6 1 3.5915 1.4096 0.5818 7 6 2.0078 -1.2138 -0.0005 8 1 1.5069 -2.1266 0.2863 9 6 3.3626 -1.2431 -0.3743 10 6 3.9008 -0.2719 -1.3333 11 6 5.1999 -0.3272 -1.6698 12 7 6.0338 -1.2728 -1.1349 13 7 7.4005 -1.5166 -1.3353 14 6 7.7792 -2.5344 -0.6065 15 6 6.6749 -3.0101 0.1171 16 6 6.6648 -4.1348 1.0574 17 8 5.6332 -4.4472 1.6207 18 8 7.7997 -4.8232 1.2978 19 6 5.5722 -2.1968 -0.2375 20 6 4.2394 -2.2058 0.1606 21 1 -0.4849 0.8400 -0.0004 22 1 3.2580 0.4811 -1.7648 23 1 5.5947 0.3881 -2.3761 24 1 8.7792 -2.9404 -0.5657 25 1 7.7436 -5.5569 1.9252 26 1 3.8836 -2.9384 0.8698 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075963698.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:35 Heat of formation + Delta-G solvation = -8.211611 kcal Electronic energy + Delta-G solvation = -15368.016145 eV Core-core repulsion = 12605.851624 eV Total energy + Delta-G solvation = -2762.164521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81860 -38.83556 -36.38953 -35.15741 -34.04774 -31.88178 -30.16910 -28.53237 -26.07659 -23.22770 -22.08527 -21.22956 -20.00583 -18.03378 -17.38851 -16.27081 -15.96288 -15.58671 -14.98078 -14.85639 -14.17760 -13.87241 -13.58347 -13.19509 -12.63453 -12.56982 -11.91677 -11.38449 -11.31590 -10.93351 -10.82897 -10.55503 -10.32569 -9.96422 -9.75004 -9.50719 -9.25102 -8.42575 -7.57249 -7.03423 -5.03611 1.67269 2.08795 2.65448 2.76009 2.89388 2.93477 3.09397 3.50231 3.75636 4.00873 4.16578 4.82149 5.10269 5.49457 5.67575 5.89071 6.02964 6.18171 6.36972 6.49852 6.64913 6.79373 7.18535 7.33146 7.35011 7.47408 7.71006 7.87898 8.02397 8.15115 8.44490 8.85754 9.40681 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.008404 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.369185 B = 3330.884856 C = 3926.856937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.240 1.240 7 C -0.381 4.381 8 H 0.109 0.891 9 C 0.105 3.895 10 C -0.218 4.218 11 C 0.126 3.874 12 N -0.325 5.325 13 N -0.364 5.364 14 C 0.143 3.857 15 C -0.393 4.393 16 C 0.558 3.442 17 O -0.549 6.549 18 O -0.530 6.530 19 C 0.227 3.773 20 C -0.273 4.273 21 H 0.299 0.701 22 H 0.140 0.860 23 H 0.151 0.849 24 H 0.183 0.817 25 H 0.399 0.601 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 1.252 -1.056 6.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.163 1.163 7 C -0.408 4.408 8 H 0.126 0.874 9 C 0.098 3.902 10 C -0.241 4.241 11 C 0.001 3.999 12 N -0.093 5.093 13 N -0.182 5.182 14 C -0.042 4.042 15 C -0.405 4.405 16 C 0.408 3.592 17 O -0.442 6.442 18 O -0.341 6.341 19 C 0.113 3.887 20 C -0.297 4.297 21 H 0.110 0.890 22 H 0.157 0.843 23 H 0.168 0.832 24 H 0.200 0.800 25 H 0.255 0.745 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.853 2.453 -2.051 6.669 hybrid contribution -0.163 -0.380 0.929 1.017 sum 5.690 2.073 -1.123 6.159 Atomic orbital electron populations 1.69600 1.08478 1.31931 1.27830 1.26524 0.94983 1.02665 0.90738 0.86279 0.81681 0.78589 0.79675 1.18510 1.20326 1.16251 1.19724 0.92262 0.96694 1.32150 0.87350 1.18833 0.92959 0.89834 0.88575 1.22072 0.93881 1.04600 1.03580 1.20884 0.89193 0.91714 0.98061 1.45511 1.07343 1.23566 1.32874 1.77218 0.88918 1.22799 1.29305 1.23648 0.98545 0.91241 0.90717 1.18118 0.94467 1.09210 1.18742 1.19514 0.79814 0.80477 0.79354 1.90824 1.33108 1.68719 1.51593 1.84584 1.39172 1.46897 1.63407 1.18829 0.93715 0.87773 0.88416 1.20534 0.88959 1.09272 1.10903 0.89021 0.84275 0.83174 0.79992 0.74533 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.00 13.92 55.56 0.77 -16.22 15 2 C 0.08 1.71 5.44 -17.31 -0.09 1.61 15 3 Si 0.91 17.12 24.48 -169.99 -4.16 12.96 15 4 H -0.26 -4.46 6.65 56.52 0.38 -4.08 15 5 H -0.28 -5.03 7.11 56.52 0.40 -4.62 15 6 H -0.24 -4.76 6.84 56.52 0.39 -4.37 15 7 C -0.38 -9.04 9.60 -37.98 -0.36 -9.40 15 8 H 0.11 2.71 8.06 -52.49 -0.42 2.29 15 9 C 0.11 2.44 5.23 -104.64 -0.55 1.89 15 10 C -0.22 -4.45 7.29 -37.54 -0.27 -4.73 15 11 C 0.13 2.48 11.13 -16.65 -0.19 2.29 15 12 N -0.32 -7.23 3.86 -10.59 -0.04 -7.27 15 13 N -0.36 -7.69 12.56 30.71 0.39 -7.30 15 14 C 0.14 2.80 11.77 -17.21 -0.20 2.60 15 15 C -0.39 -8.69 6.19 -104.48 -0.65 -9.34 15 16 C 0.56 11.66 8.31 34.10 0.28 11.95 15 17 O -0.55 -12.98 16.42 -19.36 -0.32 -13.30 15 18 O -0.53 -8.43 13.27 -41.00 -0.54 -8.98 15 19 C 0.23 5.40 6.75 -84.06 -0.57 4.83 15 20 C -0.27 -6.66 9.55 -38.30 -0.37 -7.03 15 21 H 0.30 5.89 8.29 -40.82 -0.34 5.55 15 22 H 0.14 2.56 4.81 -52.49 -0.25 2.31 15 23 H 0.15 2.38 8.06 -52.49 -0.42 1.95 15 24 H 0.18 2.79 8.06 -52.49 -0.42 2.37 15 25 H 0.40 4.35 9.11 45.56 0.42 4.76 15 26 H 0.14 3.47 7.04 -52.49 -0.37 3.10 15 LS Contribution 239.80 15.07 3.61 3.61 Total: -1.00 -28.65 239.80 -3.91 -32.56 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -0.65 Total: 9.27 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.96 Total: -5.32 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 1.12 Total: -30.80 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.86 Total: -22.28 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -4.16 Total: 12.96 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.65 -3.91 -32.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075963698.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.345 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds