Wall clock time and date at job start Mon Mar 30 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30808 * 1 3 3 Si 1.86804 * 119.99978 * 2 1 4 4 H 1.48498 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46923 * 300.00193 * 3 2 1 6 6 H 1.48504 * 109.46939 * 60.00043 * 3 2 1 7 7 C 1.39968 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.41019 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.40796 * 119.71187 * 180.02562 * 9 7 2 11 11 C 1.36824 * 119.28587 * 179.97438 * 10 9 7 12 12 C 1.50703 * 120.65933 * 179.97438 * 11 10 9 13 13 F 1.39905 * 109.46757 * 120.02333 * 12 11 10 14 14 F 1.39894 * 109.47276 * 240.02285 * 12 11 10 15 15 C 1.39710 * 118.68208 * 0.02562 * 11 10 9 16 16 N 1.38901 * 120.31924 * 179.97438 * 15 11 10 17 17 C 1.40162 * 119.36004 * 0.24724 * 15 11 10 18 18 F 1.35094 * 119.66316 * 179.72882 * 17 15 11 19 19 N 1.31430 * 120.66663 * 359.47560 * 17 15 11 20 20 H 0.96996 * 119.99732 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.35531 * 359.95437 * 10 9 7 22 22 H 1.08997 * 109.46973 * 0.02883 * 12 11 10 23 23 H 0.97001 * 120.00343 * 0.02562 * 16 15 11 24 24 H 0.97005 * 119.99932 * 179.72114 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8833 2.3965 1.2126 7 6 2.0079 -1.2121 -0.0005 8 1 3.0879 -1.2123 -0.0001 9 6 1.3029 -2.4334 -0.0005 10 6 2.0130 -3.6492 -0.0005 11 6 1.3202 -4.8290 0.0000 12 6 2.0489 -6.1481 -0.0006 13 9 1.6975 -6.8754 1.1418 14 9 1.6967 -6.8750 -1.1428 15 6 -0.0763 -4.7865 0.0000 16 7 -0.8136 -5.9637 0.0000 17 6 -0.7260 -3.5446 -0.0059 18 9 -2.0761 -3.4965 -0.0115 19 7 -0.0352 -2.4266 -0.0009 20 1 -0.4849 0.8400 0.0004 21 1 3.0931 -3.6504 -0.0013 22 1 3.1241 -5.9692 -0.0009 23 1 -0.3592 -6.8207 0.0004 24 1 -1.7830 -5.9288 0.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238571910.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:37 Heat of formation + Delta-G solvation = -114.811088 kcal Electronic energy + Delta-G solvation = -16062.939343 eV Core-core repulsion = 12754.295582 eV Total energy + Delta-G solvation = -3308.643761 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.59356 -47.71869 -46.54500 -38.49438 -34.64570 -32.91233 -31.48906 -28.94314 -25.66975 -25.02979 -21.82107 -21.08160 -18.21301 -17.37458 -16.78462 -16.53666 -16.06811 -15.52928 -15.06773 -14.75772 -14.63788 -14.22443 -13.49965 -13.18680 -12.95397 -12.36216 -12.26340 -12.03245 -11.73832 -11.33247 -11.16590 -10.72924 -10.69603 -10.35102 -10.15757 -9.11140 -8.46399 -8.05446 -6.90795 -6.53277 -4.46525 2.34746 2.56107 3.06246 3.07754 3.10191 3.88973 4.22675 4.53021 4.65040 4.76779 4.93558 5.36197 5.40193 5.68956 6.02650 6.27470 6.84187 6.96960 6.99255 7.08869 7.58147 7.99527 8.27822 8.50540 8.52460 8.73669 9.66410 10.22271 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.008556 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.257892 B = 3271.837126 C = 3886.596909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.065 3.935 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.427 4.427 8 H 0.091 0.909 9 C 0.249 3.751 10 C -0.212 4.212 11 C -0.152 4.152 12 C 0.319 3.681 13 F -0.207 7.207 14 F -0.207 7.207 15 C 0.039 3.961 16 N -0.883 5.883 17 C 0.264 3.736 18 F -0.140 7.140 19 N -0.468 5.468 20 H 0.275 0.725 21 H 0.115 0.885 22 H 0.114 0.886 23 H 0.387 0.613 24 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -5.828 0.002 6.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.109 0.891 9 C 0.123 3.877 10 C -0.237 4.237 11 C -0.163 4.163 12 C 0.265 3.735 13 F -0.189 7.189 14 F -0.188 7.188 15 C -0.066 4.066 16 N -0.428 5.428 17 C 0.100 3.900 18 F -0.119 7.119 19 N -0.185 5.185 20 H 0.086 0.914 21 H 0.133 0.867 22 H 0.131 0.869 23 H 0.215 0.785 24 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.465 -4.836 0.001 5.428 hybrid contribution 0.181 -0.459 0.007 0.494 sum 2.646 -5.295 0.008 5.919 Atomic orbital electron populations 1.70143 1.07212 1.28045 1.28509 1.26073 0.94932 1.01259 0.93717 0.86217 0.80705 0.80995 0.78614 1.18315 1.19813 1.19820 1.19479 0.94399 0.88916 1.43173 0.89137 1.18048 0.85748 0.92123 0.91779 1.21157 0.99215 0.91590 1.11743 1.19255 0.91772 0.93732 1.11542 1.20350 0.99010 0.83457 0.70640 1.92958 1.94202 1.79909 1.51793 1.92955 1.94182 1.79919 1.51792 1.17683 0.90453 0.86557 1.11916 1.41638 1.07699 1.04496 1.88929 1.18152 0.78142 0.89072 1.04683 1.91429 1.29045 1.97062 1.94386 1.68148 1.08792 1.24186 1.17404 0.91390 0.86657 0.86896 0.78537 0.78303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.96 11.44 55.55 0.64 -18.32 14 2 C 0.07 1.61 5.50 -17.34 -0.10 1.52 14 3 Si 0.91 17.95 29.56 -169.99 -5.02 12.93 14 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 14 7 C -0.43 -10.79 9.12 -37.88 -0.35 -11.14 14 8 H 0.09 2.08 7.85 -52.49 -0.41 1.66 14 9 C 0.25 6.49 6.55 -84.99 -0.56 5.93 14 10 C -0.21 -4.74 9.40 -39.13 -0.37 -5.11 14 11 C -0.15 -3.19 5.37 -104.58 -0.56 -3.76 14 12 C 0.32 5.41 4.95 36.01 0.18 5.59 14 13 F -0.21 -3.58 16.36 2.25 0.04 -3.54 14 14 F -0.21 -3.57 16.36 2.25 0.04 -3.54 14 15 C 0.04 0.88 6.73 -83.39 -0.56 0.32 14 16 N -0.88 -16.48 8.85 32.66 0.29 -16.19 14 17 C 0.26 6.67 8.45 -17.00 -0.14 6.52 14 18 F -0.14 -3.37 16.67 2.25 0.04 -3.33 14 19 N -0.47 -12.89 7.85 -11.24 -0.09 -12.98 14 20 H 0.27 6.59 8.30 -40.82 -0.34 6.25 14 21 H 0.12 2.20 7.98 -52.48 -0.42 1.79 14 22 H 0.11 1.53 7.91 -51.93 -0.41 1.12 14 23 H 0.39 6.66 6.41 -40.82 -0.26 6.40 14 24 H 0.39 6.66 8.32 -40.82 -0.34 6.32 14 LS Contribution 231.23 15.07 3.48 3.48 Total: -1.00 -28.49 231.23 -4.02 -32.51 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.98 Total: 9.11 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.45 Total: -0.13 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.84 Total: -47.50 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 0.11 Total: -10.41 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.02 Total: 12.93 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.49 -4.02 -32.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238571910.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.298 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds