Wall clock time and date at job start Mon Mar 30 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30808 * 1 3 3 Si 1.86804 * 119.99978 * 2 1 4 4 H 1.48498 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46923 * 300.00193 * 3 2 1 6 6 H 1.48504 * 109.46939 * 60.00043 * 3 2 1 7 7 C 1.39968 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.41019 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.40796 * 119.71187 * 180.02562 * 9 7 2 11 11 C 1.36824 * 119.28587 * 179.97438 * 10 9 7 12 12 C 1.50703 * 120.65933 * 179.97438 * 11 10 9 13 13 F 1.39905 * 109.46757 * 120.02333 * 12 11 10 14 14 F 1.39894 * 109.47276 * 240.02285 * 12 11 10 15 15 C 1.39710 * 118.68208 * 0.02562 * 11 10 9 16 16 N 1.38901 * 120.31924 * 179.97438 * 15 11 10 17 17 C 1.40162 * 119.36004 * 0.24724 * 15 11 10 18 18 F 1.35094 * 119.66316 * 179.72882 * 17 15 11 19 19 N 1.31430 * 120.66663 * 359.47560 * 17 15 11 20 20 H 0.96996 * 119.99732 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.35531 * 359.95437 * 10 9 7 22 22 H 1.08997 * 109.46973 * 0.02883 * 12 11 10 23 23 H 0.97001 * 120.00343 * 0.02562 * 16 15 11 24 24 H 0.97005 * 119.99932 * 179.72114 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8833 2.3965 1.2126 7 6 2.0079 -1.2121 -0.0005 8 1 3.0879 -1.2123 -0.0001 9 6 1.3029 -2.4334 -0.0005 10 6 2.0130 -3.6492 -0.0005 11 6 1.3202 -4.8290 0.0000 12 6 2.0489 -6.1481 -0.0006 13 9 1.6975 -6.8754 1.1418 14 9 1.6967 -6.8750 -1.1428 15 6 -0.0763 -4.7865 0.0000 16 7 -0.8136 -5.9637 0.0000 17 6 -0.7260 -3.5446 -0.0059 18 9 -2.0761 -3.4965 -0.0115 19 7 -0.0352 -2.4266 -0.0009 20 1 -0.4849 0.8400 0.0004 21 1 3.0931 -3.6504 -0.0013 22 1 3.1241 -5.9692 -0.0009 23 1 -0.3592 -6.8207 0.0004 24 1 -1.7830 -5.9288 0.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238571910.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:37 Heat of formation + Delta-G solvation = -133.805712 kcal Electronic energy + Delta-G solvation = -16063.763012 eV Core-core repulsion = 12754.295582 eV Total energy + Delta-G solvation = -3309.467430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.94852 -49.58920 -47.89653 -40.29172 -36.38734 -34.69433 -33.21366 -30.73943 -27.21408 -26.83471 -23.57540 -22.81946 -19.95403 -18.92823 -18.22723 -18.13970 -17.75676 -17.11490 -16.68884 -16.64288 -16.36670 -15.93440 -14.86187 -14.84616 -14.30158 -14.17949 -13.84814 -13.70933 -13.43852 -12.94389 -12.76725 -12.53919 -12.12054 -12.06460 -11.77589 -10.90409 -10.24944 -9.89875 -8.68483 -8.32554 -6.32073 0.56082 0.77608 1.45982 1.52654 1.61711 2.25711 2.72476 2.83604 3.08568 3.17045 3.46251 3.65880 3.84938 4.20051 4.29499 4.57278 5.11850 5.15761 5.25864 5.32005 5.78039 6.15907 6.56048 6.72453 6.88695 7.03447 7.83430 8.46551 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.008556 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.257892 B = 3271.837126 C = 3886.596909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.018 3.982 3 Si 0.990 3.010 4 H -0.244 1.244 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.109 0.891 9 C 0.212 3.788 10 C -0.196 4.196 11 C -0.162 4.162 12 C 0.326 3.674 13 F -0.208 7.208 14 F -0.208 7.208 15 C 0.049 3.951 16 N -0.869 5.869 17 C 0.221 3.779 18 F -0.145 7.145 19 N -0.510 5.510 20 H 0.277 0.723 21 H 0.152 0.848 22 H 0.162 0.838 23 H 0.397 0.603 24 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -6.723 0.004 8.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.202 4.202 3 Si 0.811 3.189 4 H -0.166 1.166 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.490 4.490 8 H 0.127 0.873 9 C 0.084 3.916 10 C -0.220 4.220 11 C -0.174 4.174 12 C 0.273 3.727 13 F -0.189 7.189 14 F -0.189 7.189 15 C -0.058 4.058 16 N -0.414 5.414 17 C 0.059 3.941 18 F -0.124 7.124 19 N -0.228 5.228 20 H 0.087 0.913 21 H 0.169 0.831 22 H 0.179 0.821 23 H 0.227 0.773 24 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.521 -5.803 0.002 7.356 hybrid contribution -0.490 -0.351 0.007 0.603 sum 4.032 -6.154 0.009 7.357 Atomic orbital electron populations 1.70287 1.09246 1.29043 1.30684 1.27059 0.95572 1.05004 0.92571 0.85032 0.79823 0.75803 0.78285 1.16633 1.19759 1.19770 1.19934 0.95379 0.89422 1.44225 0.87323 1.18607 0.85800 0.94108 0.93035 1.21522 1.00982 0.90699 1.08753 1.19768 0.91428 0.95894 1.10266 1.20527 1.00589 0.81176 0.70417 1.92963 1.94398 1.79655 1.51893 1.92960 1.94379 1.79666 1.51893 1.17863 0.91507 0.86568 1.09882 1.41593 1.08167 1.03866 1.87809 1.18435 0.78262 0.90043 1.07349 1.91396 1.29259 1.97144 1.94647 1.68012 1.10064 1.25829 1.18927 0.91276 0.83064 0.82140 0.77297 0.77369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.10 11.44 21.83 0.25 -41.85 14 2 C 0.02 0.91 5.50 85.26 0.47 1.38 14 3 Si 0.99 36.82 29.56 68.60 2.03 38.85 14 4 H -0.24 -8.30 7.11 99.48 0.71 -7.60 14 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 14 6 H -0.27 -9.99 7.11 99.48 0.71 -9.28 14 7 C -0.46 -23.05 9.12 23.37 0.21 -22.84 14 8 H 0.11 4.83 7.85 -2.91 -0.02 4.81 14 9 C 0.21 11.08 6.55 40.15 0.26 11.34 14 10 C -0.20 -8.33 9.40 22.56 0.21 -8.12 14 11 C -0.16 -6.44 5.37 -19.84 -0.11 -6.54 14 12 C 0.33 9.73 4.95 71.24 0.35 10.08 14 13 F -0.21 -6.41 16.36 44.97 0.74 -5.67 14 14 F -0.21 -6.40 16.36 44.97 0.74 -5.67 14 15 C 0.05 2.14 6.73 38.85 0.26 2.40 14 16 N -0.87 -31.03 8.85 -50.58 -0.45 -31.48 14 17 C 0.22 11.40 8.45 85.22 0.72 12.12 14 18 F -0.14 -7.21 16.67 44.97 0.75 -6.46 14 19 N -0.51 -28.91 7.85 -189.46 -1.49 -30.40 14 20 H 0.28 13.83 8.30 -92.71 -0.77 13.06 14 21 H 0.15 5.19 7.98 -2.91 -0.02 5.17 14 22 H 0.16 3.41 7.91 -2.39 -0.02 3.39 14 23 H 0.40 12.68 6.41 -92.71 -0.59 12.09 14 24 H 0.40 13.14 8.32 -92.70 -0.77 12.37 14 Total: -1.00 -62.99 231.23 4.87 -58.12 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.08 Total: 24.74 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 2.38 Total: -0.18 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -1.69 Total: -103.74 kcal Atomic # 9 Polarization: -20.02 SS G_CDS: 2.22 Total: -17.80 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -62.99 4.87 -58.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238571910.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.682 kcal (2) G-P(sol) polarization free energy of solvation -62.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds