Wall clock time and date at job start Mon Mar 30 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00181 * 3 2 1 6 6 H 1.48495 * 109.47216 * 60.00329 * 3 2 1 7 7 C 1.40001 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00169 * 180.27627 * 7 2 1 9 9 C 1.41195 * 119.99629 * 359.97438 * 7 2 1 10 10 N 1.33779 * 119.75598 * 359.73096 * 9 7 2 11 11 C 1.31872 * 121.43797 * 179.74877 * 10 9 7 12 12 N 1.38885 * 119.60815 * 180.26363 * 11 10 9 13 13 C 1.40145 * 120.78460 * 0.52882 * 11 10 9 14 14 F 1.35093 * 120.28120 * 179.76205 * 13 11 10 15 15 C 1.38854 * 119.43312 * 359.73951 * 13 11 10 16 16 C 1.38281 * 118.66661 * 359.97438 * 15 13 11 17 17 C 1.50698 * 120.40715 * 180.02562 * 16 15 13 18 18 F 1.39908 * 109.46924 * 119.97745 * 17 16 15 19 19 F 1.39895 * 109.47187 * 239.97377 * 17 16 15 20 20 H 0.97005 * 119.99895 * 359.97438 * 1 2 3 21 21 H 0.96992 * 120.00073 * 180.25847 * 12 11 10 22 22 H 0.97001 * 119.99739 * 0.26287 * 12 11 10 23 23 H 1.07995 * 120.66933 * 179.97438 * 15 13 11 24 24 H 1.08996 * 109.47203 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3463 -0.0006 5 1 1.8830 2.3965 -1.2125 6 1 1.8831 2.3964 1.2125 7 6 2.0077 -1.2124 -0.0005 8 1 3.0877 -1.2125 0.0040 9 6 1.3017 -2.4352 -0.0005 10 7 -0.0361 -2.4294 0.0054 11 6 -0.7288 -3.5515 0.0007 12 7 -2.1167 -3.5012 0.0016 13 6 -0.0811 -4.7943 0.0003 14 9 -0.8008 -5.9376 0.0003 15 6 1.3067 -4.8405 -0.0006 16 6 2.0100 -3.6499 -0.0015 17 6 3.5170 -3.6542 -0.0030 18 9 3.9840 -2.9967 -1.1463 19 9 3.9864 -2.9953 1.1383 20 1 -0.4850 0.8401 0.0004 21 1 -2.6319 -4.3230 0.0020 22 1 -2.5709 -2.6441 0.0019 23 1 1.8264 -5.7872 -0.0005 24 1 3.8774 -4.6829 -0.0027 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238644507.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:25 Heat of formation + Delta-G solvation = -119.298914 kcal Electronic energy + Delta-G solvation = -16241.489555 eV Core-core repulsion = 12932.651187 eV Total energy + Delta-G solvation = -3308.838368 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.91931 -47.47830 -45.87615 -38.29070 -34.30814 -33.30101 -30.63417 -29.19261 -26.32226 -23.94923 -22.07001 -20.58102 -18.04398 -17.03489 -16.54636 -16.14116 -15.77208 -15.65631 -14.96341 -14.43100 -14.37405 -13.92709 -13.21872 -12.85076 -12.56336 -12.29741 -12.22742 -11.87150 -11.33674 -11.30357 -11.05200 -10.82495 -10.28621 -9.99975 -9.98893 -9.27986 -8.16178 -7.91024 -6.83771 -6.62304 -4.74412 2.57254 2.65439 3.04414 3.10330 3.11445 3.86386 4.55558 4.55844 4.79875 5.27022 5.56464 5.63297 5.79849 5.97421 6.21169 6.44997 6.69917 6.94180 6.99309 7.37191 7.60010 7.99123 8.18979 8.42885 8.55932 8.76905 9.89498 10.10174 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.012560 C = 0.008594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.137345 B = 2228.797873 C = 3257.441198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.066 3.934 3 Si 0.912 3.088 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.399 4.399 8 H 0.097 0.903 9 C 0.302 3.698 10 N -0.515 5.515 11 C 0.420 3.580 12 N -0.859 5.859 13 C -0.178 4.178 14 F -0.170 7.170 15 C -0.012 4.012 16 C -0.362 4.362 17 C 0.344 3.656 18 F -0.210 7.210 19 F -0.210 7.210 20 H 0.275 0.725 21 H 0.396 0.604 22 H 0.399 0.601 23 H 0.113 0.887 24 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -2.745 -0.007 2.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.162 4.162 3 Si 0.735 3.265 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.429 4.429 8 H 0.115 0.885 9 C 0.178 3.822 10 N -0.237 5.237 11 C 0.172 3.828 12 N -0.404 5.404 13 C -0.205 4.205 14 F -0.150 7.150 15 C -0.036 4.036 16 C -0.368 4.368 17 C 0.289 3.711 18 F -0.191 7.191 19 F -0.191 7.191 20 H 0.087 0.913 21 H 0.224 0.776 22 H 0.228 0.772 23 H 0.131 0.869 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.505 -1.805 0.000 1.874 hybrid contribution 0.247 -0.265 -0.001 0.362 sum 0.752 -2.070 -0.001 2.203 Atomic orbital electron populations 1.70145 1.07418 1.28199 1.26373 1.26183 0.94983 1.01644 0.93354 0.86175 0.81251 0.80377 0.78672 1.17883 1.19600 1.19602 1.19962 0.95198 0.89117 1.38600 0.88501 1.17881 0.86655 0.91081 0.86621 1.68461 1.07341 1.22252 1.25637 1.18769 0.85961 0.88650 0.89421 1.42005 1.03021 1.10441 1.84928 1.17581 0.89465 0.80712 1.32726 1.91232 1.78073 1.49026 1.96689 1.20378 0.91760 0.96862 0.94645 1.20466 0.93229 0.94833 1.28231 1.19692 0.90326 0.90177 0.70867 1.92937 1.90057 1.84273 1.51848 1.92933 1.89982 1.84210 1.51991 0.91345 0.77632 0.77216 0.86933 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.78 11.45 55.55 0.64 -17.14 14 2 C 0.07 1.63 5.50 -17.34 -0.10 1.53 14 3 Si 0.91 18.37 29.56 -169.99 -5.02 13.35 14 4 H -0.26 -5.16 7.11 56.52 0.40 -4.75 14 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 14 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 14 7 C -0.40 -10.50 8.17 -37.80 -0.31 -10.81 14 8 H 0.10 2.50 5.48 -52.49 -0.29 2.21 14 9 C 0.30 8.08 6.54 -85.00 -0.56 7.52 14 10 N -0.52 -13.71 7.88 -10.24 -0.08 -13.79 14 11 C 0.42 10.06 7.76 -155.20 -1.20 8.86 14 12 N -0.86 -16.65 9.07 31.22 0.28 -16.37 14 13 C -0.18 -4.12 7.38 -38.64 -0.29 -4.41 14 14 F -0.17 -3.65 16.64 2.25 0.04 -3.61 14 15 C -0.01 -0.26 9.76 -39.34 -0.38 -0.64 14 16 C -0.36 -8.59 5.44 -103.71 -0.56 -9.15 14 17 C 0.34 7.11 4.93 36.00 0.18 7.29 14 18 F -0.21 -4.57 16.04 2.25 0.04 -4.54 14 19 F -0.21 -4.58 16.02 2.25 0.04 -4.54 14 20 H 0.28 6.26 8.30 -40.82 -0.34 5.92 14 21 H 0.40 6.57 8.29 -40.82 -0.34 6.24 14 22 H 0.40 7.33 8.95 -40.82 -0.37 6.97 14 23 H 0.11 2.07 7.99 -52.49 -0.42 1.65 14 24 H 0.09 1.45 7.92 -51.93 -0.41 1.04 14 LS Contribution 230.38 15.07 3.47 3.47 Total: -1.00 -28.80 230.38 -4.78 -33.58 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -0.96 Total: 9.41 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.22 Total: 0.19 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.84 Total: -47.31 kcal Atomic # 9 Polarization: -12.80 SS G_CDS: 0.11 Total: -12.69 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.80 -4.78 -33.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238644507.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.718 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds