Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.35773 * 54.72124 * 10 9 7 12 12 C 1.52664 * 109.36284 * 174.31204 * 10 9 7 13 13 C 1.52886 * 110.32988 * 184.12925 * 12 10 9 14 14 S 1.81654 * 109.28085 * 293.16293 * 13 12 10 15 15 O 1.42104 * 108.68116 * 303.29477 * 14 13 12 16 16 O 1.42100 * 108.68293 * 171.88985 * 14 13 12 17 17 C 1.81840 * 101.18079 * 57.59185 * 14 13 12 18 18 C 1.50742 * 109.35841 * 295.00012 * 10 9 7 19 19 O 1.20759 * 120.41761 * 358.54177 * 18 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09003 * 109.32887 * 304.38923 * 12 10 9 24 24 H 1.09000 * 109.32543 * 63.86470 * 12 10 9 25 25 H 1.08996 * 109.50784 * 173.21794 * 13 12 10 26 26 H 1.08997 * 109.53493 * 53.11624 * 13 12 10 27 27 H 1.09003 * 109.72140 * 190.62809 * 17 14 13 28 28 H 1.09003 * 109.75116 * 70.00210 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9314 -3.5508 0.8401 12 6 1.4846 -4.9781 0.1433 13 6 2.4629 -6.1482 0.2487 14 16 3.3446 -6.3369 -1.3283 15 8 2.3894 -6.5139 -2.3654 16 8 4.3778 -7.2978 -1.1601 17 6 4.1014 -4.6932 -1.5080 18 6 3.0266 -3.6514 -1.2884 19 8 2.7980 -2.8213 -2.1352 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 0.8670 -4.9424 1.0407 24 1 0.8440 -5.1208 -0.7270 25 1 1.9135 -7.0632 0.4702 26 1 3.1805 -5.9527 1.0455 27 1 4.5171 -4.5872 -2.5100 28 1 4.8912 -4.5684 -0.7671 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259960664.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = -114.081252 kcal Electronic energy + Delta-G solvation = -14768.611059 eV Core-core repulsion = 12105.006887 eV Total energy + Delta-G solvation = -2663.604173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38043 -37.05761 -36.09574 -35.40935 -32.92041 -30.32766 -29.98451 -25.77374 -22.80002 -22.09017 -19.36319 -18.62343 -16.92878 -16.56968 -16.32330 -15.88031 -15.36354 -14.78344 -14.26461 -14.17696 -13.68188 -13.12568 -12.64560 -12.46336 -12.12391 -12.07950 -11.98497 -11.64176 -11.29568 -11.08106 -10.85234 -10.55855 -10.41757 -10.34238 -9.67499 -9.21710 -9.02912 -8.38945 -6.03572 -4.04301 -0.10162 2.28302 2.68426 3.29786 3.37711 3.40629 3.53086 3.82356 4.17601 4.43175 4.62378 4.68348 4.82848 5.09513 5.25378 5.34680 5.54459 5.63352 5.75623 6.13756 6.28891 6.60649 7.46355 7.61753 7.88105 7.94637 8.29327 8.96507 9.58558 11.08226 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.052697 B = 0.007336 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.212972 B = 3815.654329 C = 4014.717973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.140 4.140 11 H 0.102 0.898 12 C -0.101 4.101 13 C -0.599 4.599 14 S 2.425 3.575 15 O -0.931 6.931 16 O -0.943 6.943 17 C -0.668 4.668 18 C 0.367 3.633 19 O -0.388 6.388 20 H 0.260 0.740 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 -11.726 1.991 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.159 4.159 11 H 0.120 0.880 12 C -0.140 4.140 13 C -0.729 4.729 14 S 2.605 3.395 15 O -0.928 6.928 16 O -0.940 6.940 17 C -0.795 4.795 18 C 0.234 3.766 19 O -0.254 6.254 20 H 0.070 0.930 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.118 0.882 24 H 0.104 0.896 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.166 0.834 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.751 -11.871 0.926 13.223 hybrid contribution 0.704 1.569 0.577 1.813 sum 6.454 -10.303 1.502 12.250 Atomic orbital electron populations 1.69948 1.05977 1.26570 1.50902 1.24924 0.94819 0.99159 0.95260 0.86545 0.80027 0.83910 0.77548 1.19910 1.20964 1.21059 1.21054 0.92655 0.90715 1.50454 0.92995 1.19089 0.93027 0.89710 0.98545 1.22087 1.00207 0.97985 0.95634 0.87964 1.21299 0.97079 0.89725 1.05858 1.30207 1.12817 1.08419 1.21455 1.07915 0.76455 0.76675 0.78415 1.93614 1.61170 1.84406 1.53583 1.93587 1.57369 1.56264 1.86771 1.31176 1.12229 1.22717 1.13401 1.23857 0.81120 0.82522 0.89088 1.90454 1.60349 1.31698 1.42936 0.92998 0.95133 0.95184 0.88216 0.89629 0.84485 0.84460 0.83379 0.82241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.51 -13.87 7.79 -34.44 -0.27 -14.14 15 8 H 0.05 1.38 7.60 -52.49 -0.40 0.98 15 9 C 0.03 0.79 4.10 -27.88 -0.11 0.68 15 10 C -0.14 -2.42 2.20 -91.92 -0.20 -2.62 15 11 H 0.10 1.53 8.14 -51.92 -0.42 1.11 15 12 C -0.10 -1.33 4.98 -26.96 -0.13 -1.46 15 13 C -0.60 -5.66 6.28 37.10 0.23 -5.43 15 14 S 2.42 28.79 5.33 -107.50 -0.57 28.22 15 15 O -0.93 -14.70 17.83 -57.80 -1.03 -15.73 15 16 O -0.94 -12.99 18.10 -57.80 -1.05 -14.04 15 17 C -0.67 -8.27 6.62 36.29 0.24 -8.03 15 18 C 0.37 6.56 6.04 -28.73 -0.17 6.38 15 19 O -0.39 -8.88 15.81 6.00 0.09 -8.78 15 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.03 0.79 7.94 -51.93 -0.41 0.38 15 23 H 0.10 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.09 1.18 7.90 -51.93 -0.41 0.77 15 25 H 0.14 0.99 8.14 -51.93 -0.42 0.56 15 26 H 0.14 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.15 1.72 8.13 -51.93 -0.42 1.30 15 28 H 0.16 1.42 8.14 -51.93 -0.42 0.99 15 LS Contribution 253.43 15.07 3.82 3.82 Total: -1.00 -36.11 253.43 -6.85 -42.96 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -3.32 Total: -4.42 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -0.52 Total: -23.04 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.98 Total: -38.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 28.79 SS G_CDS: -0.57 Total: 28.22 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -36.11 -6.85 -42.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960664.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.121 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds