Wall clock time and date at job start Mon Mar 30 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00024 * 2 1 4 4 H 1.48497 * 109.47055 * 269.99778 * 3 2 1 5 5 H 1.48507 * 109.47448 * 29.99759 * 3 2 1 6 6 H 1.48500 * 109.47027 * 149.99746 * 3 2 1 7 7 C 1.37871 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00091 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99923 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.46971 * 180.02562 * 9 7 2 11 11 O 1.20760 * 120.00180 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99735 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.64138 * 34.56716 * 12 10 9 14 14 C 1.53876 * 109.64468 * 154.99470 * 12 10 9 15 15 C 1.55048 * 106.62143 * 166.89974 * 14 12 10 16 16 S 1.83290 * 102.56847 * 317.56742 * 15 14 12 17 17 O 1.42096 * 109.35307 * 136.61207 * 16 15 14 18 18 O 1.42099 * 109.35441 * 269.81409 * 16 15 14 19 19 C 1.54165 * 109.53658 * 274.20644 * 12 10 9 20 20 H 0.97005 * 119.99933 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47097 * 59.99853 * 9 7 2 22 22 H 1.08997 * 109.47059 * 299.99948 * 9 7 2 23 23 H 1.09005 * 110.02571 * 47.61081 * 14 12 10 24 24 H 1.08993 * 110.03245 * 286.18950 * 14 12 10 25 25 H 1.09001 * 110.79040 * 199.29943 * 15 14 12 26 26 H 1.08994 * 110.95334 * 75.91033 * 15 14 12 27 27 H 1.08999 * 110.31725 * 93.40081 * 19 12 10 28 28 H 1.09006 * 110.31591 * 331.20631 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0010 11 8 3.2290 -3.5328 0.0010 12 6 5.4955 -2.8903 0.0021 13 1 6.0097 -2.1264 0.5852 14 6 5.7636 -4.2763 0.6144 15 6 7.2356 -4.6312 0.2812 16 16 7.3900 -4.0945 -1.4646 17 8 8.6241 -3.4125 -1.6403 18 8 7.0479 -5.1753 -2.3215 19 6 6.0230 -2.8792 -1.4465 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6800 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 5.0929 -5.0147 0.1748 24 1 5.6236 -4.2407 1.6947 25 1 7.4052 -5.7040 0.3725 26 1 7.9241 -4.0766 0.9186 27 1 6.3943 -1.8880 -1.7064 28 1 5.2370 -3.1833 -2.1378 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260859248.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:58 Heat of formation + Delta-G solvation = -142.474057 kcal Electronic energy + Delta-G solvation = -14390.701558 eV Core-core repulsion = 11725.866181 eV Total energy + Delta-G solvation = -2664.835377 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68433 -38.07669 -37.12204 -36.63622 -35.03460 -32.16059 -30.77934 -27.16208 -25.35141 -22.71665 -20.20260 -19.78989 -19.02744 -17.86447 -17.59502 -16.73919 -16.61940 -16.28539 -15.86828 -15.33053 -14.88350 -14.79896 -14.29053 -13.59349 -13.44738 -13.24021 -13.21770 -13.05210 -12.90801 -12.64959 -12.39147 -12.12752 -11.83534 -11.73672 -11.53061 -11.27836 -10.79405 -10.19513 -8.27725 -6.36383 -0.89188 1.12263 1.40177 1.43362 1.53793 1.64906 2.37668 2.64899 2.95549 3.06722 3.26342 3.46529 3.63686 3.76282 4.03510 4.15494 4.54412 4.66652 4.69113 4.82916 4.89939 4.97255 5.11518 5.13433 5.55033 6.23916 6.77329 6.84322 7.28201 8.89797 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.045787 B = 0.006623 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.378462 B = 4226.486662 C = 4485.347270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.223 1.223 7 C -0.542 4.542 8 H 0.028 0.972 9 C -0.072 4.072 10 C 0.374 3.626 11 O -0.490 6.490 12 C -0.132 4.132 13 H 0.158 0.842 14 C -0.120 4.120 15 C -0.552 4.552 16 S 2.405 3.595 17 O -0.967 6.967 18 O -0.982 6.982 19 C -0.582 4.582 20 H 0.267 0.733 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.158 0.842 26 H 0.173 0.827 27 H 0.173 0.827 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.116 -3.690 2.061 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.145 1.145 7 C -0.579 4.579 8 H 0.047 0.953 9 C -0.109 4.109 10 C 0.250 3.750 11 O -0.365 6.365 12 C -0.151 4.151 13 H 0.176 0.824 14 C -0.158 4.158 15 C -0.685 4.685 16 S 2.592 3.408 17 O -0.964 6.964 18 O -0.979 6.979 19 C -0.711 4.711 20 H 0.075 0.925 21 H 0.099 0.901 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.136 0.864 25 H 0.176 0.824 26 H 0.191 0.809 27 H 0.191 0.809 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.201 -4.362 1.289 19.732 hybrid contribution -1.318 0.862 0.310 1.605 sum 17.883 -3.501 1.599 18.292 Atomic orbital electron populations 1.70109 1.08920 1.28350 1.52254 1.26181 0.95715 1.04050 0.93759 0.85585 0.80121 0.76920 0.79509 1.18999 1.21607 1.14493 1.21318 0.91808 0.93528 1.51292 0.95328 1.20184 0.95422 0.94181 1.01098 1.24868 0.90393 0.91331 0.68409 1.90310 1.60585 1.48675 1.36891 1.22317 0.95421 1.02093 0.95306 0.82420 1.22237 0.93344 0.94825 1.05421 1.30446 1.03773 1.13900 1.20336 1.08509 0.75935 0.76326 0.80051 1.93566 1.41432 1.74962 1.86489 1.93566 1.85076 1.53558 1.65745 1.30530 1.18371 1.19895 1.02348 0.92463 0.90082 0.90772 0.90263 0.86436 0.82368 0.80876 0.80938 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.17 13.96 21.45 0.30 -59.87 15 2 C 0.00 -0.05 5.47 84.65 0.46 0.42 15 3 Si 0.96 40.48 27.47 68.60 1.88 42.36 15 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 5 H -0.29 -12.42 7.11 99.48 0.71 -11.72 15 6 H -0.22 -7.84 6.54 99.48 0.65 -7.19 15 7 C -0.54 -30.87 9.48 25.60 0.24 -30.63 15 8 H 0.03 1.92 7.00 -2.91 -0.02 1.90 15 9 C -0.07 -2.94 4.46 29.10 0.13 -2.81 15 10 C 0.37 13.46 6.12 29.10 0.18 13.64 15 11 O -0.49 -22.35 14.98 -1.45 -0.02 -22.37 15 12 C -0.13 -2.78 2.88 -10.85 -0.03 -2.82 15 13 H 0.16 2.02 8.14 -2.39 -0.02 2.00 15 14 C -0.12 -2.15 5.55 31.59 0.18 -1.97 15 15 C -0.55 -6.26 7.31 72.68 0.53 -5.73 15 16 S 2.40 44.64 6.11 -56.49 -0.34 44.29 15 17 O -0.97 -22.79 18.14 -127.49 -2.31 -25.11 15 18 O -0.98 -27.31 18.15 -127.49 -2.31 -29.62 15 19 C -0.58 -11.10 6.73 72.38 0.49 -10.61 15 20 H 0.27 15.54 8.31 -92.70 -0.77 14.77 15 21 H 0.08 2.91 7.20 -2.39 -0.02 2.90 15 22 H 0.07 2.70 7.57 -2.39 -0.02 2.69 15 23 H 0.08 1.79 7.46 -2.38 -0.02 1.77 15 24 H 0.12 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.16 1.31 8.14 -2.39 -0.02 1.29 15 26 H 0.17 0.89 8.14 -2.39 -0.02 0.87 15 27 H 0.17 2.33 8.14 -2.39 -0.02 2.31 15 28 H 0.13 2.88 7.87 -2.38 -0.02 2.86 15 Total: -1.00 -85.14 253.67 0.47 -84.67 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.10 Total: 6.17 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 2.18 Total: -40.51 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.30 Total: -59.87 kcal Atomic # 8 Polarization: -72.46 SS G_CDS: -4.65 Total: -77.10 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.88 Total: 42.36 kcal Atomic # 16 Polarization: 44.64 SS G_CDS: -0.34 Total: 44.29 kcal Total: -85.14 0.47 -84.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859248.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.807 kcal (2) G-P(sol) polarization free energy of solvation -85.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds