Wall clock time and date at job start Mon Mar 30 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48495 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47313 * 300.00274 * 3 2 1 6 6 H 1.48500 * 109.46976 * 60.00081 * 3 2 1 7 7 C 1.40031 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99722 * 180.02562 * 7 2 1 9 9 C 1.41317 * 120.00057 * 359.97438 * 7 2 1 10 10 N 1.33725 * 119.78410 * 0.02562 * 9 7 2 11 11 C 1.31954 * 121.41591 * 179.97438 * 10 9 7 12 12 N 1.38822 * 119.58250 * 179.97438 * 11 10 9 13 13 C 1.39788 * 120.83071 * 0.02778 * 11 10 9 14 14 C 1.38596 * 119.49348 * 359.97032 * 13 11 10 15 15 C 1.38388 * 118.68092 * 0.02562 * 14 13 11 16 16 C 1.50695 * 120.42912 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47366 * 359.97438 * 16 15 14 18 18 F 1.39897 * 109.47517 * 119.99656 * 16 15 14 19 19 F 1.39901 * 109.47449 * 239.99958 * 16 15 14 20 20 H 0.97004 * 120.00020 * 0.02562 * 1 2 3 21 21 H 0.96994 * 120.00229 * 0.02562 * 12 11 10 22 22 H 0.97003 * 119.99948 * 179.97438 * 12 11 10 23 23 H 1.08002 * 120.25468 * 179.97438 * 13 11 10 24 24 H 1.07998 * 120.66392 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3964 -1.2124 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0001 9 6 1.3009 -2.4366 -0.0005 10 7 -0.0363 -2.4315 -0.0005 11 6 -0.7284 -3.5550 -0.0010 12 7 -2.1158 -3.5053 -0.0005 13 6 -0.0822 -4.7945 -0.0010 14 6 1.3030 -4.8418 -0.0011 15 6 2.0082 -3.6512 -0.0006 16 6 3.5152 -3.6567 -0.0001 17 9 3.9767 -4.9773 0.0004 18 9 3.9844 -2.9988 -1.1421 19 9 3.9836 -2.9991 1.1425 20 1 -0.4850 0.8401 -0.0004 21 1 -2.5704 -2.6485 -0.0001 22 1 -2.6305 -4.3275 -0.0012 23 1 -0.6578 -5.7083 -0.0010 24 1 1.8217 -5.7891 -0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306258692.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:34 Heat of formation + Delta-G solvation = -141.677562 kcal Electronic energy + Delta-G solvation = -16414.504125 eV Core-core repulsion = 13104.695346 eV Total energy + Delta-G solvation = -3309.808779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.80213 -48.35368 -48.21128 -40.21182 -36.11076 -34.89763 -32.49707 -31.01629 -28.17878 -25.63872 -23.62460 -22.47430 -19.74099 -19.17032 -19.11400 -18.64613 -17.74585 -17.23041 -16.43481 -15.40886 -15.21559 -15.15697 -14.82666 -14.75743 -14.55863 -14.49521 -14.44998 -14.34517 -13.69207 -12.97320 -12.84707 -12.67762 -12.17265 -11.79543 -11.67230 -11.06895 -10.05371 -9.65644 -8.60933 -8.38498 -6.69821 0.83131 1.05611 1.40291 1.53475 1.55074 2.14931 2.21134 2.80542 3.07160 3.51387 3.57884 3.62691 4.07862 4.31094 4.67604 4.81907 4.98441 5.23634 5.45506 5.68125 5.88663 6.09215 6.47784 6.67555 6.98400 7.09591 8.20113 8.35592 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.015022 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.436923 B = 1863.529313 C = 3104.478119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.029 3.971 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.294 3.706 10 N -0.563 5.563 11 C 0.416 3.584 12 N -0.842 5.842 13 C -0.359 4.359 14 C 0.021 3.979 15 C -0.426 4.426 16 C 0.534 3.466 17 F -0.189 7.189 18 F -0.193 7.193 19 F -0.193 7.193 20 H 0.283 0.717 21 H 0.399 0.601 22 H 0.412 0.588 23 H 0.136 0.864 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 -3.186 -0.005 3.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.195 4.195 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.104 0.896 9 C 0.168 3.832 10 N -0.286 5.286 11 C 0.169 3.831 12 N -0.388 5.388 13 C -0.384 4.384 14 C -0.003 4.003 15 C -0.432 4.432 16 C 0.480 3.520 17 F -0.171 7.171 18 F -0.175 7.175 19 F -0.175 7.175 20 H 0.094 0.906 21 H 0.228 0.772 22 H 0.243 0.757 23 H 0.154 0.846 24 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.840 -2.293 -0.003 2.442 hybrid contribution 0.601 -0.207 -0.001 0.635 sum -0.239 -2.501 -0.004 2.512 Atomic orbital electron populations 1.70183 1.08574 1.29404 1.27092 1.26916 0.95812 1.04295 0.92495 0.85184 0.79400 0.76173 0.79274 1.18365 1.18498 1.18512 1.20131 0.94862 0.90594 1.42248 0.89596 1.18094 0.87692 0.91349 0.86070 1.68345 1.06893 1.25857 1.27535 1.19152 0.86900 0.90202 0.86874 1.41989 1.01688 1.11396 1.83686 1.20994 0.94203 0.96812 1.26385 1.20794 0.94044 0.96021 0.89450 1.20440 0.90092 0.97479 1.35187 1.17958 0.89340 0.71977 0.72764 1.93038 1.90857 1.36785 1.96392 1.93100 1.90629 1.81661 1.52095 1.93101 1.90652 1.81684 1.52059 0.90591 0.77249 0.75668 0.84619 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.57 11.46 21.84 0.25 -37.32 14 2 C 0.03 1.47 5.50 85.29 0.47 1.94 14 3 Si 0.98 37.95 29.56 68.60 2.03 39.98 14 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 14 5 H -0.26 -9.56 7.11 99.48 0.71 -8.85 14 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 14 7 C -0.45 -24.33 8.18 23.46 0.19 -24.14 14 8 H 0.09 4.58 5.49 -2.91 -0.02 4.57 14 9 C 0.29 16.12 6.54 40.18 0.26 16.38 14 10 N -0.56 -30.02 7.89 -186.59 -1.47 -31.49 14 11 C 0.42 18.75 7.74 133.42 1.03 19.78 14 12 N -0.84 -28.96 9.06 -55.38 -0.50 -29.46 14 13 C -0.36 -14.80 9.95 22.73 0.23 -14.57 14 14 C 0.02 0.92 9.52 22.39 0.21 1.13 14 15 C -0.43 -21.05 5.44 -19.26 -0.10 -21.15 14 16 C 0.53 24.43 2.79 71.23 0.20 24.63 14 17 F -0.19 -7.64 16.04 44.97 0.72 -6.92 14 18 F -0.19 -8.99 16.01 44.97 0.72 -8.27 14 19 F -0.19 -9.00 16.01 44.97 0.72 -8.28 14 20 H 0.28 12.94 8.29 -92.71 -0.77 12.17 14 21 H 0.40 13.58 8.95 -92.71 -0.83 12.75 14 22 H 0.41 10.68 8.82 -92.71 -0.82 9.86 14 23 H 0.14 4.52 8.06 -2.91 -0.02 4.50 14 24 H 0.14 5.01 7.25 -2.91 -0.02 4.99 14 Total: -1.00 -60.62 229.87 4.60 -56.02 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.36 Total: 21.73 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 2.49 Total: 4.00 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -1.72 Total: -98.27 kcal Atomic # 9 Polarization: -25.63 SS G_CDS: 2.16 Total: -23.46 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -60.62 4.60 -56.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306258692.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.653 kcal (2) G-P(sol) polarization free energy of solvation -60.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds