Wall clock time and date at job start Mon Mar 30 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86798 * 119.99609 * 2 1 4 4 H 1.48510 * 109.46922 * 269.99448 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00145 * 3 2 1 7 7 C 1.40059 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.40893 * 120.00137 * 0.28190 * 7 2 1 10 10 N 1.33716 * 119.91322 * 359.44388 * 9 7 2 11 11 C 1.31329 * 121.58854 * 179.71165 * 10 9 7 12 12 C 1.39011 * 121.25155 * 0.57323 * 11 10 9 13 13 C 1.38464 * 119.69885 * 359.71926 * 12 11 10 14 14 C 1.50702 * 120.74390 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.47232 * 0.02562 * 14 13 12 16 16 F 1.39900 * 109.46918 * 120.02364 * 14 13 12 17 17 F 1.39904 * 109.47267 * 240.02081 * 14 13 12 18 18 C 1.39299 * 118.51391 * 359.97438 * 13 12 11 19 19 N 1.38544 * 120.61215 * 180.02562 * 18 13 12 20 20 H 0.96996 * 120.00391 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.37093 * 180.31830 * 11 10 9 22 22 H 1.08002 * 120.15084 * 179.74056 * 12 11 10 23 23 H 0.96996 * 119.99948 * 179.97438 * 19 18 13 24 24 H 0.97000 * 120.00333 * 359.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4892 2.0464 -1.4002 5 1 1.4390 2.6527 0.7000 6 1 3.5392 1.4402 0.7000 7 6 2.0080 -1.2129 0.0005 8 1 3.0881 -1.2129 0.0001 9 6 1.3036 -2.4331 -0.0049 10 7 -0.0335 -2.4312 0.0006 11 6 -0.7231 -3.5488 -0.0098 12 6 -0.0904 -4.7866 -0.0153 13 6 1.2927 -4.8500 -0.0155 14 6 2.0030 -6.1791 -0.0208 15 9 1.0595 -7.2121 -0.0255 16 9 2.8048 -6.2748 -1.1632 17 9 2.8041 -6.2844 1.1213 18 6 2.0131 -3.6577 -0.0108 19 7 3.3985 -3.6705 -0.0114 20 1 -0.4850 0.8400 -0.0004 21 1 -1.8023 -3.5054 -0.0101 22 1 -0.6751 -5.6946 -0.0196 23 1 3.8911 -2.8350 -0.0084 24 1 3.8758 -4.5149 -0.0147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307290649.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:35 Heat of formation + Delta-G solvation = -122.722839 kcal Electronic energy + Delta-G solvation = -16264.157574 eV Core-core repulsion = 12955.170733 eV Total energy + Delta-G solvation = -3308.986841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.56112 -47.07499 -47.02501 -38.56918 -34.02109 -33.80660 -31.06338 -28.46769 -25.97421 -25.04278 -21.37425 -21.18428 -18.23188 -17.98908 -17.88469 -16.60855 -16.09551 -15.46690 -14.95004 -14.10429 -13.97591 -13.63645 -13.50344 -13.41920 -13.21854 -13.17270 -12.69564 -12.63237 -11.87295 -11.32848 -11.29881 -11.03610 -10.55204 -10.11312 -10.07013 -9.51243 -8.29819 -7.76418 -6.89799 -6.51077 -4.46564 2.45858 2.73860 3.03700 3.05240 3.10066 3.38882 3.86497 4.58416 4.60923 4.76951 4.85310 5.07511 5.74363 6.11388 6.17629 6.48088 6.77611 6.99102 7.04155 7.30549 7.70085 8.04002 8.12068 8.52739 8.59532 8.79643 9.99741 10.22317 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.043659 B = 0.008473 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.179321 B = 3303.919189 C = 3770.598099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.427 4.427 8 H 0.083 0.917 9 C 0.226 3.774 10 N -0.461 5.461 11 C 0.083 3.917 12 C -0.247 4.247 13 C -0.219 4.219 14 C 0.513 3.487 15 F -0.185 7.185 16 F -0.190 7.190 17 F -0.190 7.190 18 C 0.136 3.864 19 N -0.868 5.868 20 H 0.274 0.726 21 H 0.125 0.875 22 H 0.106 0.894 23 H 0.399 0.601 24 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -4.300 -0.035 5.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.460 4.460 8 H 0.101 0.899 9 C 0.095 3.905 10 N -0.175 5.175 11 C -0.077 4.077 12 C -0.271 4.271 13 C -0.232 4.232 14 C 0.459 3.541 15 F -0.167 7.167 16 F -0.171 7.171 17 F -0.171 7.171 18 C 0.027 3.973 19 N -0.410 5.410 20 H 0.086 0.914 21 H 0.142 0.858 22 H 0.124 0.876 23 H 0.229 0.771 24 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.984 -3.394 -0.019 4.520 hybrid contribution 1.257 -0.506 -0.019 1.356 sum 4.242 -3.901 -0.039 5.763 Atomic orbital electron populations 1.70124 1.07119 1.27952 1.28082 1.25968 0.94937 1.00883 0.93957 0.86305 0.80351 0.80833 0.79231 1.19410 1.20036 1.18604 1.19244 0.93908 0.89340 1.43484 0.89939 1.18431 0.88554 0.89596 0.93965 1.68713 1.05709 1.26366 1.16691 1.22326 0.98922 0.87899 0.98510 1.20825 0.91714 0.98922 1.15660 1.19147 0.95118 0.88221 1.20705 1.18533 0.76452 0.86310 0.72805 1.93085 1.65165 1.62166 1.96256 1.93140 1.75270 1.96839 1.51860 1.93142 1.75309 1.96792 1.51868 1.18649 0.84180 0.93803 1.00636 1.42026 1.03443 1.09904 1.85614 0.91424 0.85751 0.87586 0.77070 0.79220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.20 11.46 55.55 0.64 -17.56 14 2 C 0.07 1.65 5.50 -17.32 -0.10 1.55 14 3 Si 0.91 17.66 29.56 -169.99 -5.02 12.64 14 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 14 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 14 7 C -0.43 -10.62 8.89 -37.90 -0.34 -10.96 14 8 H 0.08 1.85 6.11 -52.49 -0.32 1.52 14 9 C 0.23 5.89 6.57 -84.79 -0.56 5.33 14 10 N -0.46 -12.31 7.86 -10.96 -0.09 -12.39 14 11 C 0.08 1.98 11.17 -17.48 -0.20 1.78 14 12 C -0.25 -5.53 9.51 -39.21 -0.37 -5.91 14 13 C -0.22 -4.92 5.41 -104.14 -0.56 -5.49 14 14 C 0.51 10.10 2.81 36.01 0.10 10.20 14 15 F -0.19 -3.51 16.06 2.25 0.04 -3.48 14 16 F -0.19 -3.59 16.35 2.25 0.04 -3.55 14 17 F -0.19 -3.59 16.36 2.25 0.04 -3.55 14 18 C 0.14 3.18 6.72 -83.18 -0.56 2.62 14 19 N -0.87 -16.88 8.78 32.79 0.29 -16.59 14 20 H 0.27 6.37 8.29 -40.82 -0.34 6.03 14 21 H 0.13 2.61 8.06 -52.49 -0.42 2.19 14 22 H 0.11 2.13 7.24 -52.49 -0.38 1.75 14 23 H 0.40 7.20 6.83 -40.82 -0.28 6.92 14 24 H 0.38 6.71 6.45 -40.82 -0.26 6.44 14 LS Contribution 227.28 15.07 3.43 3.43 Total: -1.00 -27.30 227.28 -4.03 -31.33 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -0.80 Total: 10.61 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.58 Total: -0.87 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.84 Total: -46.55 kcal Atomic # 9 Polarization: -10.68 SS G_CDS: 0.11 Total: -10.57 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.64 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -27.30 -4.03 -31.33 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307290649.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.397 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds