Wall clock time and date at job start Mon Mar 30 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48507 * 109.46839 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47369 * 120.00230 * 3 2 1 6 6 H 1.48496 * 109.47245 * 240.00646 * 3 2 1 7 7 C 1.39934 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99557 * 158.37643 * 7 2 1 9 9 C 1.41107 * 119.99880 * 338.37389 * 7 2 1 10 10 C 1.41979 * 120.73357 * 317.58917 * 9 7 2 11 11 N 1.38418 * 120.99930 * 359.97438 * 10 9 7 12 12 C 1.39166 * 117.99983 * 179.76058 * 10 9 7 13 13 C 1.38030 * 119.32372 * 0.49784 * 12 10 9 14 14 N 1.32273 * 121.45151 * 359.76211 * 13 12 10 15 15 C 1.31480 * 122.22081 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.76027 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.46967 * 245.19236 * 16 15 14 18 18 F 1.39898 * 109.47481 * 5.19140 * 16 15 14 19 19 F 1.39904 * 109.47420 * 125.19945 * 16 15 14 20 20 H 0.96998 * 120.00456 * 173.48643 * 1 2 3 21 21 H 0.96996 * 120.00307 * 349.34367 * 11 10 9 22 22 H 0.97002 * 119.99905 * 169.34483 * 11 10 9 23 23 H 1.08001 * 120.34164 * 180.23621 * 12 10 9 24 24 H 1.08004 * 119.27676 * 179.74012 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0965 1.6964 1.2124 6 1 3.0963 1.6965 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0314 -1.2445 -0.3452 9 6 1.3773 -2.3911 0.4493 10 6 0.5626 -2.3798 1.6121 11 7 0.3666 -1.2151 2.3339 12 6 -0.0365 -3.5739 2.0017 13 6 0.1874 -4.7161 1.2598 14 7 0.9556 -4.7002 0.1831 15 6 1.5460 -3.6045 -0.2407 16 6 2.4102 -3.6498 -1.4745 17 9 3.7368 -3.3750 -1.1250 18 9 2.3339 -4.9221 -2.0510 19 9 1.9626 -2.6940 -2.3929 20 1 -0.4851 -0.8346 -0.0953 21 1 0.9043 -0.4305 2.1440 22 1 -0.3086 -1.1835 3.0296 23 1 -0.6668 -3.6076 2.8781 24 1 -0.2745 -5.6434 1.5652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307314248.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:10 Heat of formation + Delta-G solvation = -132.070593 kcal Electronic energy + Delta-G solvation = -16707.395128 eV Core-core repulsion = 13398.002939 eV Total energy + Delta-G solvation = -3309.392190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.00257 -46.54857 -46.46047 -38.92794 -35.17551 -33.15440 -30.57859 -28.95701 -26.03188 -24.57643 -21.66012 -21.00956 -18.21277 -17.52865 -17.38007 -17.36028 -16.12326 -14.98320 -14.43596 -14.18750 -13.75425 -13.56562 -13.35361 -13.03764 -12.94758 -12.76504 -12.69134 -12.67173 -12.07243 -11.72536 -11.24693 -10.74955 -10.52911 -10.41895 -9.77797 -9.38581 -8.37621 -8.10457 -7.44314 -6.88873 -4.68011 2.14235 2.70751 3.06957 3.10790 3.25777 3.81410 3.86943 4.39159 4.79242 4.90923 4.96622 5.32873 5.68669 5.93641 6.06986 6.48075 6.52942 6.94878 7.01677 7.47838 7.60738 7.79630 8.09180 8.47426 8.55544 8.73536 9.22813 9.88363 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.014471 C = 0.010088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.479410 B = 1934.385831 C = 2774.806901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.030 3.970 3 Si 1.063 2.937 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.086 0.914 9 C 0.044 3.956 10 C 0.184 3.816 11 N -0.855 5.855 12 C -0.224 4.224 13 C 0.031 3.969 14 N -0.467 5.467 15 C -0.075 4.075 16 C 0.539 3.461 17 F -0.190 7.190 18 F -0.187 7.187 19 F -0.176 7.176 20 H 0.295 0.705 21 H 0.402 0.598 22 H 0.383 0.617 23 H 0.109 0.891 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 0.160 2.273 2.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.191 4.191 3 Si 0.885 3.115 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.104 0.896 9 C 0.036 3.964 10 C 0.071 3.929 11 N -0.396 5.396 12 C -0.252 4.252 13 C -0.132 4.132 14 N -0.177 5.177 15 C -0.212 4.212 16 C 0.484 3.516 17 F -0.171 7.171 18 F -0.168 7.168 19 F -0.158 7.158 20 H 0.107 0.893 21 H 0.234 0.766 22 H 0.210 0.790 23 H 0.127 0.873 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.081 1.057 1.761 2.321 hybrid contribution 0.020 -0.701 0.447 0.831 sum 1.102 0.357 2.209 2.494 Atomic orbital electron populations 1.70460 1.07709 1.33846 1.28618 1.26963 0.95680 1.04011 0.92452 0.83648 0.75697 0.73636 0.78471 1.19726 1.19910 1.19733 1.20380 1.01580 0.92907 1.40187 0.89570 1.17755 0.94179 0.93778 0.90675 1.18152 0.97579 0.86794 0.90410 1.42121 1.43459 1.12951 1.41092 1.21130 1.07371 0.93071 1.03620 1.21451 1.01034 0.96818 0.93914 1.66485 1.07765 1.29106 1.14364 1.20380 1.09466 0.92712 0.98600 1.17753 0.77901 0.72431 0.83526 1.93108 1.38107 1.93683 1.92246 1.93092 1.96262 1.41149 1.86326 1.93152 1.89135 1.64915 1.68587 0.89278 0.76616 0.79007 0.87330 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.11 12.06 55.55 0.67 -18.44 14 2 C 0.03 0.70 3.36 -17.33 -0.06 0.64 14 3 Si 1.06 20.12 29.98 -169.99 -5.10 15.03 14 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 14 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 7 C -0.52 -12.99 6.98 -37.86 -0.26 -13.26 14 8 H 0.09 2.19 6.87 -52.49 -0.36 1.83 14 9 C 0.04 1.11 4.86 -106.48 -0.52 0.59 14 10 C 0.18 4.17 5.83 -83.11 -0.48 3.69 14 11 N -0.86 -17.00 7.73 32.83 0.25 -16.75 14 12 C -0.22 -4.68 9.98 -39.31 -0.39 -5.07 14 13 C 0.03 0.68 11.15 -17.44 -0.19 0.48 14 14 N -0.47 -11.39 9.72 -8.92 -0.09 -11.48 14 15 C -0.07 -1.89 6.33 -81.85 -0.52 -2.41 14 16 C 0.54 12.98 2.89 36.01 0.10 13.09 14 17 F -0.19 -4.43 16.17 2.25 0.04 -4.40 14 18 F -0.19 -4.31 16.86 2.25 0.04 -4.28 14 19 F -0.18 -4.30 16.22 2.25 0.04 -4.27 14 20 H 0.29 7.66 7.14 -40.82 -0.29 7.37 14 21 H 0.40 8.27 6.14 -40.82 -0.25 8.02 14 22 H 0.38 6.40 8.87 -40.82 -0.36 6.04 14 23 H 0.11 1.91 8.06 -52.49 -0.42 1.48 14 24 H 0.13 2.39 8.06 -52.48 -0.42 1.97 14 LS Contribution 226.57 15.07 3.41 3.41 Total: -1.00 -26.67 226.57 -3.97 -30.63 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.91 Total: 12.78 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.33 Total: -2.25 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.84 Total: -46.67 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 0.11 Total: -12.94 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.10 Total: 15.03 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -26.67 -3.97 -30.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307314248.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.439 kcal (2) G-P(sol) polarization free energy of solvation -26.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds