Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48507 * 109.46839 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47369 * 120.00230 * 3 2 1 6 6 H 1.48496 * 109.47245 * 240.00646 * 3 2 1 7 7 C 1.39934 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99557 * 158.37643 * 7 2 1 9 9 C 1.41107 * 119.99880 * 338.37389 * 7 2 1 10 10 C 1.41979 * 120.73357 * 317.58917 * 9 7 2 11 11 N 1.38418 * 120.99930 * 359.97438 * 10 9 7 12 12 C 1.39166 * 117.99983 * 179.76058 * 10 9 7 13 13 C 1.38030 * 119.32372 * 0.49784 * 12 10 9 14 14 N 1.32273 * 121.45151 * 359.76211 * 13 12 10 15 15 C 1.31480 * 122.22081 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.76027 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.46967 * 245.19236 * 16 15 14 18 18 F 1.39898 * 109.47481 * 5.19140 * 16 15 14 19 19 F 1.39904 * 109.47420 * 125.19945 * 16 15 14 20 20 H 0.96998 * 120.00456 * 173.48643 * 1 2 3 21 21 H 0.96996 * 120.00307 * 349.34367 * 11 10 9 22 22 H 0.97002 * 119.99905 * 169.34483 * 11 10 9 23 23 H 1.08001 * 120.34164 * 180.23621 * 12 10 9 24 24 H 1.08004 * 119.27676 * 179.74012 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0965 1.6964 1.2124 6 1 3.0963 1.6965 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0314 -1.2445 -0.3452 9 6 1.3773 -2.3911 0.4493 10 6 0.5626 -2.3798 1.6121 11 7 0.3666 -1.2151 2.3339 12 6 -0.0365 -3.5739 2.0017 13 6 0.1874 -4.7161 1.2598 14 7 0.9556 -4.7002 0.1831 15 6 1.5460 -3.6045 -0.2407 16 6 2.4102 -3.6498 -1.4745 17 9 3.7368 -3.3750 -1.1250 18 9 2.3339 -4.9221 -2.0510 19 9 1.9626 -2.6940 -2.3929 20 1 -0.4851 -0.8346 -0.0953 21 1 0.9043 -0.4305 2.1440 22 1 -0.3086 -1.1835 3.0296 23 1 -0.6668 -3.6076 2.8781 24 1 -0.2745 -5.6434 1.5652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307314248.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = -149.079952 kcal Electronic energy + Delta-G solvation = -16708.132709 eV Core-core repulsion = 13398.002939 eV Total energy + Delta-G solvation = -3310.129771 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.89830 -48.42687 -48.37544 -40.68499 -36.92446 -34.88903 -32.36215 -30.67912 -27.85801 -26.38905 -23.41382 -22.81820 -19.98571 -19.38613 -19.28523 -19.15734 -17.85228 -16.69171 -16.16031 -15.84968 -15.45095 -15.40744 -15.20303 -14.88475 -14.78625 -14.60025 -14.55993 -14.47524 -13.86226 -13.49359 -12.81043 -12.47450 -12.14961 -11.96842 -11.50143 -11.10695 -10.16638 -9.88820 -9.25934 -8.60032 -6.54172 0.35724 0.95209 1.53965 1.60041 1.80973 1.93542 2.30229 2.64481 2.99676 3.15934 3.19871 3.51957 3.80722 4.28443 4.45234 4.73618 4.81451 5.22196 5.25165 5.66036 5.78489 5.96894 6.31219 6.69777 6.82399 7.19086 7.44693 8.01560 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.014471 C = 0.010088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.479410 B = 1934.385831 C = 2774.806901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.007 3.993 3 Si 1.108 2.892 4 H -0.269 1.269 5 H -0.254 1.254 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.018 3.982 10 C 0.177 3.823 11 N -0.844 5.844 12 C -0.222 4.222 13 C 0.038 3.962 14 N -0.494 5.494 15 C -0.101 4.101 16 C 0.538 3.462 17 F -0.189 7.189 18 F -0.183 7.183 19 F -0.182 7.182 20 H 0.276 0.724 21 H 0.399 0.601 22 H 0.400 0.600 23 H 0.148 0.852 24 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 0.402 3.573 3.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.209 4.209 3 Si 0.926 3.074 4 H -0.193 1.193 5 H -0.178 1.178 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.010 3.990 10 C 0.062 3.938 11 N -0.385 5.385 12 C -0.250 4.250 13 C -0.126 4.126 14 N -0.205 5.205 15 C -0.236 4.236 16 C 0.483 3.517 17 F -0.170 7.170 18 F -0.164 7.164 19 F -0.164 7.164 20 H 0.087 0.913 21 H 0.230 0.770 22 H 0.229 0.771 23 H 0.166 0.834 24 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.617 1.287 3.078 3.393 hybrid contribution 0.109 -0.915 0.096 0.927 sum 0.726 0.372 3.174 3.277 Atomic orbital electron populations 1.70595 1.08120 1.32412 1.30560 1.28084 0.95609 1.06295 0.90938 0.83085 0.74893 0.70276 0.79179 1.19297 1.17844 1.19781 1.20394 1.01150 0.93942 1.41983 0.91117 1.18060 0.95347 0.93868 0.91754 1.18384 0.97119 0.88285 0.90000 1.42053 1.43556 1.12022 1.40883 1.21521 1.06982 0.91931 1.04523 1.22221 0.99217 0.98627 0.92521 1.66546 1.09117 1.28960 1.15870 1.20602 1.10372 0.93439 0.99213 1.17765 0.77975 0.72429 0.83496 1.93099 1.37998 1.93700 1.92239 1.93087 1.96260 1.40809 1.86264 1.93131 1.89234 1.65221 1.68792 0.91262 0.76951 0.77074 0.83433 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.42 12.06 21.83 0.26 -38.16 14 2 C 0.01 0.33 3.36 85.25 0.29 0.61 14 3 Si 1.11 39.69 29.98 68.60 2.06 41.75 14 4 H -0.27 -9.39 7.11 99.48 0.71 -8.68 14 5 H -0.25 -8.27 7.11 99.48 0.71 -7.56 14 6 H -0.27 -9.73 7.11 99.48 0.71 -9.02 14 7 C -0.55 -27.33 6.98 23.39 0.16 -27.16 14 8 H 0.07 3.66 6.87 -2.91 -0.02 3.64 14 9 C 0.02 0.89 4.86 -21.07 -0.10 0.79 14 10 C 0.18 7.77 5.83 39.25 0.23 7.99 14 11 N -0.84 -32.01 7.73 -50.05 -0.39 -32.40 14 12 C -0.22 -8.61 9.98 22.44 0.22 -8.39 14 13 C 0.04 1.53 11.15 84.58 0.94 2.48 14 14 N -0.49 -23.59 9.72 -182.15 -1.77 -25.36 14 15 C -0.10 -5.14 6.33 43.19 0.27 -4.86 14 16 C 0.54 26.23 2.89 71.24 0.21 26.43 14 17 F -0.19 -8.94 16.17 44.97 0.73 -8.21 14 18 F -0.18 -8.47 16.86 44.97 0.76 -7.71 14 19 F -0.18 -9.06 16.22 44.97 0.73 -8.33 14 20 H 0.28 14.40 7.14 -92.71 -0.66 13.74 14 21 H 0.40 15.87 6.14 -92.71 -0.57 15.30 14 22 H 0.40 12.31 8.87 -92.71 -0.82 11.49 14 23 H 0.15 4.50 8.06 -2.91 -0.02 4.48 14 24 H 0.17 5.45 8.06 -2.91 -0.02 5.43 14 Total: -1.00 -56.31 226.57 4.60 -51.71 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.00 Total: 28.81 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 2.22 Total: -2.11 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -1.89 Total: -95.91 kcal Atomic # 9 Polarization: -26.47 SS G_CDS: 2.21 Total: -24.25 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.06 Total: 41.75 kcal Total: -56.31 4.60 -51.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307314248.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.369 kcal (2) G-P(sol) polarization free energy of solvation -56.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds