Wall clock time and date at job start Mon Mar 30 2020 02:55:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30869 * 1
3 3 Si 1.86801 * 120.00051 * 2 1
4 4 H 1.48507 * 109.46839 * 0.02562 * 3 2 1
5 5 H 1.48498 * 109.47369 * 120.00230 * 3 2 1
6 6 H 1.48496 * 109.47245 * 240.00646 * 3 2 1
7 7 C 1.39934 * 120.00007 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99557 * 158.37643 * 7 2 1
9 9 C 1.41107 * 119.99880 * 338.37389 * 7 2 1
10 10 C 1.41979 * 120.73357 * 317.58917 * 9 7 2
11 11 N 1.38418 * 120.99930 * 359.97438 * 10 9 7
12 12 C 1.39166 * 117.99983 * 179.76058 * 10 9 7
13 13 C 1.38030 * 119.32372 * 0.49784 * 12 10 9
14 14 N 1.32273 * 121.45151 * 359.76211 * 13 12 10
15 15 C 1.31480 * 122.22081 * 359.97438 * 14 13 12
16 16 C 1.50703 * 119.76027 * 179.97438 * 15 14 13
17 17 F 1.39905 * 109.46967 * 245.19236 * 16 15 14
18 18 F 1.39898 * 109.47481 * 5.19140 * 16 15 14
19 19 F 1.39904 * 109.47420 * 125.19945 * 16 15 14
20 20 H 0.96998 * 120.00456 * 173.48643 * 1 2 3
21 21 H 0.96996 * 120.00307 * 349.34367 * 11 10 9
22 22 H 0.97002 * 119.99905 * 169.34483 * 11 10 9
23 23 H 1.08001 * 120.34164 * 180.23621 * 12 10 9
24 24 H 1.08004 * 119.27676 * 179.74012 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3087 0.0000 0.0000
3 14 2.2427 1.6177 0.0000
4 1 1.2776 2.7465 0.0006
5 1 3.0965 1.6964 1.2124
6 1 3.0963 1.6965 -1.2125
7 6 2.0084 -1.2119 -0.0005
8 1 3.0314 -1.2445 -0.3452
9 6 1.3773 -2.3911 0.4493
10 6 0.5626 -2.3798 1.6121
11 7 0.3666 -1.2151 2.3339
12 6 -0.0365 -3.5739 2.0017
13 6 0.1874 -4.7161 1.2598
14 7 0.9556 -4.7002 0.1831
15 6 1.5460 -3.6045 -0.2407
16 6 2.4102 -3.6498 -1.4745
17 9 3.7368 -3.3750 -1.1250
18 9 2.3339 -4.9221 -2.0510
19 9 1.9626 -2.6940 -2.3929
20 1 -0.4851 -0.8346 -0.0953
21 1 0.9043 -0.4305 2.1440
22 1 -0.3086 -1.1835 3.0296
23 1 -0.6668 -3.6076 2.8781
24 1 -0.2745 -5.6434 1.5652
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307314248.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:09
Heat of formation + Delta-G solvation = -149.079952 kcal
Electronic energy + Delta-G solvation = -16708.132709 eV
Core-core repulsion = 13398.002939 eV
Total energy + Delta-G solvation = -3310.129771 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 232.052 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-50.89830 -48.42687 -48.37544 -40.68499 -36.92446 -34.88903 -32.36215 -30.67912
-27.85801 -26.38905 -23.41382 -22.81820 -19.98571 -19.38613 -19.28523 -19.15734
-17.85228 -16.69171 -16.16031 -15.84968 -15.45095 -15.40744 -15.20303 -14.88475
-14.78625 -14.60025 -14.55993 -14.47524 -13.86226 -13.49359 -12.81043 -12.47450
-12.14961 -11.96842 -11.50143 -11.10695 -10.16638 -9.88820 -9.25934 -8.60032
-6.54172 0.35724 0.95209 1.53965 1.60041 1.80973 1.93542 2.30229
2.64481 2.99676 3.15934 3.19871 3.51957 3.80722 4.28443 4.45234
4.73618 4.81451 5.22196 5.25165 5.66036 5.78489 5.96894 6.31219
6.69777 6.82399 7.19086 7.44693 8.01560
Molecular weight = 232.05amu
Principal moments of inertia in cm(-1)
A = 0.024395 B = 0.014471 C = 0.010088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1147.479410 B = 1934.385831 C = 2774.806901
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.795 5.795
2 C 0.007 3.993
3 Si 1.108 2.892
4 H -0.269 1.269
5 H -0.254 1.254
6 H -0.273 1.273
7 C -0.545 4.545
8 H 0.071 0.929
9 C 0.018 3.982
10 C 0.177 3.823
11 N -0.844 5.844
12 C -0.222 4.222
13 C 0.038 3.962
14 N -0.494 5.494
15 C -0.101 4.101
16 C 0.538 3.462
17 F -0.189 7.189
18 F -0.183 7.183
19 F -0.182 7.182
20 H 0.276 0.724
21 H 0.399 0.601
22 H 0.400 0.600
23 H 0.148 0.852
24 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.673 0.402 3.573 3.658
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.417 5.417
2 C -0.209 4.209
3 Si 0.926 3.074
4 H -0.193 1.193
5 H -0.178 1.178
6 H -0.198 1.198
7 C -0.575 4.575
8 H 0.089 0.911
9 C 0.010 3.990
10 C 0.062 3.938
11 N -0.385 5.385
12 C -0.250 4.250
13 C -0.126 4.126
14 N -0.205 5.205
15 C -0.236 4.236
16 C 0.483 3.517
17 F -0.170 7.170
18 F -0.164 7.164
19 F -0.164 7.164
20 H 0.087 0.913
21 H 0.230 0.770
22 H 0.229 0.771
23 H 0.166 0.834
24 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges 0.617 1.287 3.078 3.393
hybrid contribution 0.109 -0.915 0.096 0.927
sum 0.726 0.372 3.174 3.277
Atomic orbital electron populations
1.70595 1.08120 1.32412 1.30560 1.28084 0.95609 1.06295 0.90938
0.83085 0.74893 0.70276 0.79179 1.19297 1.17844 1.19781 1.20394
1.01150 0.93942 1.41983 0.91117 1.18060 0.95347 0.93868 0.91754
1.18384 0.97119 0.88285 0.90000 1.42053 1.43556 1.12022 1.40883
1.21521 1.06982 0.91931 1.04523 1.22221 0.99217 0.98627 0.92521
1.66546 1.09117 1.28960 1.15870 1.20602 1.10372 0.93439 0.99213
1.17765 0.77975 0.72429 0.83496 1.93099 1.37998 1.93700 1.92239
1.93087 1.96260 1.40809 1.86264 1.93131 1.89234 1.65221 1.68792
0.91262 0.76951 0.77074 0.83433 0.81235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -38.42 12.06 21.83 0.26 -38.16 14
2 C 0.01 0.33 3.36 85.25 0.29 0.61 14
3 Si 1.11 39.69 29.98 68.60 2.06 41.75 14
4 H -0.27 -9.39 7.11 99.48 0.71 -8.68 14
5 H -0.25 -8.27 7.11 99.48 0.71 -7.56 14
6 H -0.27 -9.73 7.11 99.48 0.71 -9.02 14
7 C -0.55 -27.33 6.98 23.39 0.16 -27.16 14
8 H 0.07 3.66 6.87 -2.91 -0.02 3.64 14
9 C 0.02 0.89 4.86 -21.07 -0.10 0.79 14
10 C 0.18 7.77 5.83 39.25 0.23 7.99 14
11 N -0.84 -32.01 7.73 -50.05 -0.39 -32.40 14
12 C -0.22 -8.61 9.98 22.44 0.22 -8.39 14
13 C 0.04 1.53 11.15 84.58 0.94 2.48 14
14 N -0.49 -23.59 9.72 -182.15 -1.77 -25.36 14
15 C -0.10 -5.14 6.33 43.19 0.27 -4.86 14
16 C 0.54 26.23 2.89 71.24 0.21 26.43 14
17 F -0.19 -8.94 16.17 44.97 0.73 -8.21 14
18 F -0.18 -8.47 16.86 44.97 0.76 -7.71 14
19 F -0.18 -9.06 16.22 44.97 0.73 -8.33 14
20 H 0.28 14.40 7.14 -92.71 -0.66 13.74 14
21 H 0.40 15.87 6.14 -92.71 -0.57 15.30 14
22 H 0.40 12.31 8.87 -92.71 -0.82 11.49 14
23 H 0.15 4.50 8.06 -2.91 -0.02 4.48 14
24 H 0.17 5.45 8.06 -2.91 -0.02 5.43 14
Total: -1.00 -56.31 226.57 4.60 -51.71
By element:
Atomic # 1 Polarization: 28.81 SS G_CDS: 0.00 Total: 28.81 kcal
Atomic # 6 Polarization: -4.33 SS G_CDS: 2.22 Total: -2.11 kcal
Atomic # 7 Polarization: -94.02 SS G_CDS: -1.89 Total: -95.91 kcal
Atomic # 9 Polarization: -26.47 SS G_CDS: 2.21 Total: -24.25 kcal
Atomic # 14 Polarization: 39.69 SS G_CDS: 2.06 Total: 41.75 kcal
Total: -56.31 4.60 -51.71 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307314248.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.369 kcal
(2) G-P(sol) polarization free energy of solvation -56.312 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.711 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds