Wall clock time and date at job start Mon Mar 30 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37577 * 119.76409 * 2 1 4 4 C 1.41311 * 120.00061 * 179.97438 * 3 2 1 5 5 C 1.40395 * 120.22179 * 179.97438 * 4 3 2 6 6 H 1.07995 * 119.99658 * 334.75714 * 5 4 3 7 7 C 1.46531 * 119.99967 * 154.75976 * 5 4 3 8 8 N 1.29502 * 120.00320 * 161.06297 * 7 5 4 9 9 Si 1.86803 * 120.00125 * 341.05896 * 7 5 4 10 10 H 1.48496 * 109.47426 * 94.25231 * 9 7 5 11 11 H 1.48498 * 109.47194 * 214.25793 * 9 7 5 12 12 H 1.48503 * 109.46970 * 334.25523 * 9 7 5 13 13 C 1.41068 * 119.55972 * 0.02562 * 4 3 2 14 14 C 1.38875 * 119.54232 * 359.97438 * 13 4 3 15 15 C 1.43196 * 120.01057 * 180.02562 * 14 13 4 16 16 N 4.81189 * 134.06725 * 179.97438 * 2 1 3 17 17 C 1.38469 * 119.77004 * 179.71835 * 2 1 3 18 18 N 1.48025 * 119.77446 * 0.02898 * 17 2 1 19 19 O 1.31702 * 119.99974 * 89.99966 * 18 17 2 20 20 O 1.31701 * 119.99758 * 269.99685 * 18 17 2 21 21 H 1.09000 * 109.46625 * 90.00207 * 1 2 3 22 22 H 1.08996 * 109.46939 * 209.99810 * 1 2 3 23 23 H 1.08998 * 109.47444 * 330.00242 * 1 2 3 24 24 H 1.08001 * 120.00470 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00692 * 179.97438 * 8 7 5 26 26 H 1.07997 * 120.22932 * 179.97438 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1943 0.0000 4 6 3.6031 1.2001 0.0005 5 6 4.3047 2.4161 0.0000 6 1 3.8420 3.3063 -0.3996 7 6 5.6649 2.4774 0.5416 8 7 6.4442 3.4620 0.2250 9 14 6.2748 1.1353 1.6889 10 1 6.9976 0.1031 0.9033 11 1 7.1935 1.7245 2.6958 12 1 5.1178 0.5112 2.3798 13 6 4.3041 -0.0241 0.0005 14 6 3.5958 -1.2187 0.0005 15 6 4.2972 -2.4671 0.0011 16 7 4.8537 -3.4575 0.0015 17 6 2.1945 -1.2019 0.0059 18 7 1.4442 -2.4779 0.0115 19 8 1.1109 -3.0509 -1.1265 20 8 1.1100 -3.0402 1.1546 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6462 2.1274 -0.0004 25 1 7.3445 3.5029 0.5838 26 1 5.3840 -0.0322 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645224.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:17 Heat of formation + Delta-G solvation = 58.203970 kcal Electronic energy + Delta-G solvation = -15341.365671 eV Core-core repulsion = 12582.081146 eV Total energy + Delta-G solvation = -2759.284525 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38940 -37.55939 -36.22765 -34.50227 -33.70284 -32.59181 -31.53590 -27.57167 -26.80723 -24.10581 -23.06741 -21.05993 -18.35609 -18.12376 -17.55482 -16.89853 -16.16437 -15.50217 -14.12931 -13.89286 -13.81138 -13.49811 -13.23154 -13.11783 -12.75287 -12.63072 -12.21678 -11.88523 -11.44012 -11.32865 -11.08315 -10.88055 -10.74099 -10.39022 -10.31726 -10.09095 -9.85514 -8.62759 -8.33839 -7.84473 -5.28261 0.44097 1.21813 1.83139 2.01212 2.58150 2.71927 2.79862 2.88342 3.27472 3.37295 3.76875 4.16266 4.59373 5.12821 5.40553 5.66756 5.81596 5.82178 5.91313 5.95124 6.11810 6.26487 6.51198 6.66639 6.86470 7.00887 7.16879 7.32607 7.37999 7.67919 7.81230 7.89273 9.07407 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.009894 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.483691 B = 2829.210257 C = 3496.366307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.006 3.994 3 C -0.192 4.192 4 C 0.085 3.915 5 C -0.375 4.375 6 H 0.110 0.890 7 C 0.076 3.924 8 N -0.729 5.729 9 Si 0.908 3.092 10 H -0.258 1.258 11 H -0.273 1.273 12 H -0.230 1.230 13 C -0.185 4.185 14 C 0.068 3.932 15 C 0.248 3.752 16 N -0.417 5.417 17 C -0.137 4.137 18 N -0.005 5.005 19 O -0.170 6.170 20 O -0.173 6.173 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.127 0.873 25 H 0.306 0.694 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 2.309 1.369 3.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.005 3.995 3 C -0.212 4.212 4 C 0.082 3.918 5 C -0.398 4.398 6 H 0.128 0.872 7 C -0.158 4.158 8 N -0.345 5.345 9 Si 0.731 3.269 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.152 1.152 13 C -0.207 4.207 14 C 0.063 3.937 15 C -0.068 4.068 16 N -0.092 5.092 17 C -0.221 4.221 18 N 0.489 4.511 19 O -0.375 6.375 20 O -0.377 6.377 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.145 0.855 25 H 0.119 0.881 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.884 1.647 1.357 2.310 hybrid contribution 0.112 -0.443 0.358 0.580 sum -0.772 1.204 1.715 2.233 Atomic orbital electron populations 1.20892 0.91393 1.02970 1.02679 1.18783 0.94975 0.89801 0.95974 1.20807 0.93094 0.95068 1.12238 1.17512 0.92048 0.91728 0.90561 1.21137 0.94907 0.96261 1.27507 0.87205 1.27952 0.95594 0.96637 0.95573 1.68956 1.07896 1.27951 1.29738 0.86328 0.80903 0.79775 0.79929 1.18324 1.19929 1.15226 1.21069 0.98418 0.89998 1.11244 1.15021 0.88025 0.87109 1.03497 1.26048 0.93892 0.93129 0.93704 1.81116 1.08633 1.10589 1.08854 1.18930 0.88144 0.79344 1.35650 1.50538 0.96780 1.02546 1.01248 1.96198 1.58557 1.66581 1.16163 1.96199 1.58740 1.67311 1.15459 0.90625 0.92398 0.90392 0.85536 0.88094 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.75 36.01 0.35 -1.57 15 2 C 0.01 0.12 5.86 -104.78 -0.61 -0.49 15 3 C -0.19 -3.57 9.44 -38.66 -0.36 -3.93 15 4 C 0.09 1.72 5.28 -106.84 -0.56 1.16 15 5 C -0.38 -7.71 9.85 -35.43 -0.35 -8.06 15 6 H 0.11 2.27 8.06 -52.49 -0.42 1.85 15 7 C 0.08 1.52 5.58 -15.19 -0.08 1.43 15 8 N -0.73 -14.72 13.89 55.98 0.78 -13.94 15 9 Si 0.91 16.54 24.57 -169.99 -4.18 12.36 15 10 H -0.26 -4.72 6.69 56.52 0.38 -4.34 15 11 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 12 H -0.23 -4.36 6.85 56.52 0.39 -3.97 15 13 C -0.19 -3.82 7.01 -38.27 -0.27 -4.09 15 14 C 0.07 1.46 5.72 -107.02 -0.61 0.85 15 15 C 0.25 5.42 14.78 -22.48 -0.33 5.09 15 16 N -0.42 -9.28 18.54 41.84 0.78 -8.51 15 17 C -0.14 -2.90 6.26 -79.14 -0.50 -3.40 15 18 N -0.01 -0.12 3.13 34.35 0.11 -0.01 15 19 O -0.17 -3.79 19.97 -31.57 -0.63 -4.42 15 20 O -0.17 -3.88 19.89 -31.57 -0.63 -4.51 15 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.06 0.96 7.32 -51.93 -0.38 0.58 15 23 H 0.08 1.02 8.08 -51.93 -0.42 0.60 15 24 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15 25 H 0.31 5.44 8.27 -40.82 -0.34 5.10 15 26 H 0.12 2.45 4.25 -52.49 -0.22 2.23 15 LS Contribution 252.35 15.07 3.80 3.80 Total: -1.00 -23.44 252.35 -4.77 -28.20 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -1.46 Total: 0.03 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -3.33 Total: -13.01 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 1.66 Total: -22.46 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.26 Total: -8.93 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -4.18 Total: 12.36 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -23.44 -4.77 -28.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645224.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.407 kcal (2) G-P(sol) polarization free energy of solvation -23.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds