Wall clock time and date at job start Mon Mar 30 2020 02:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36314 * 120.07177 * 2 1 4 4 C 1.40027 * 120.14510 * 179.97438 * 3 2 1 5 5 C 1.43199 * 119.85215 * 180.02562 * 4 3 2 6 6 N 4.78660 * 134.56325 * 0.03117 * 2 1 3 7 7 C 1.40078 * 120.29698 * 0.04281 * 4 3 2 8 8 C 1.36275 * 120.14347 * 0.02562 * 7 4 3 9 9 N 1.48028 * 120.07047 * 179.97438 * 8 7 4 10 10 O 1.31694 * 119.99876 * 359.89491 * 9 8 7 11 11 O 1.31695 * 119.99764 * 179.90020 * 9 8 7 12 12 C 1.41255 * 120.07377 * 179.72698 * 2 1 3 13 13 C 1.40396 * 120.14855 * 0.02562 * 12 2 1 14 14 H 1.07996 * 120.00139 * 227.82257 * 13 12 2 15 15 C 1.46463 * 119.99725 * 47.83188 * 13 12 2 16 16 N 1.29548 * 120.00307 * 17.02943 * 15 13 12 17 17 Si 1.86802 * 119.99814 * 197.04033 * 15 13 12 18 18 H 1.48496 * 109.47163 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47313 * 119.99943 * 17 15 13 20 20 H 1.48498 * 109.46625 * 239.99535 * 17 15 13 21 21 H 1.09000 * 109.47427 * 89.99989 * 1 2 3 22 22 H 1.08998 * 109.47721 * 329.99732 * 1 2 3 23 23 H 1.09008 * 109.46967 * 209.99555 * 1 2 3 24 24 H 1.07997 * 119.92508 * 359.97438 * 3 2 1 25 25 H 1.07994 * 119.92336 * 179.97438 * 7 4 3 26 26 H 0.96994 * 120.00366 * 173.94259 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1797 0.0000 4 6 3.5903 1.1814 0.0005 5 6 4.3015 2.4243 0.0011 6 7 4.8658 3.4103 0.0019 7 6 4.2986 -0.0271 0.0002 8 6 3.6278 -1.2133 -0.0012 9 7 4.3778 -2.4895 -0.0022 10 8 5.6947 -2.4793 -0.0038 11 8 3.7282 -3.6351 -0.0015 12 6 2.2149 -1.2224 0.0058 13 6 1.5176 -2.4409 0.0111 14 1 1.7942 -3.2184 0.7078 15 6 0.4152 -2.6579 -0.9285 16 7 0.2882 -1.8925 -1.9659 17 14 -0.8077 -4.0382 -0.6308 18 1 -0.4439 -4.7621 0.6137 19 1 -2.1723 -3.4691 -0.4920 20 1 -0.7789 -4.9809 -1.7778 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 0.8899 0.5138 23 1 -0.3633 -0.8901 0.5138 24 1 1.6500 2.1149 -0.0004 25 1 5.3785 -0.0187 0.0002 26 1 -0.3871 -2.0890 -2.6339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649312.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:36 Heat of formation + Delta-G solvation = 55.353858 kcal Electronic energy + Delta-G solvation = -15472.711978 eV Core-core repulsion = 12713.303863 eV Total energy + Delta-G solvation = -2759.408115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.13310 -36.96734 -35.98924 -34.53604 -32.87893 -31.89309 -31.06140 -27.50964 -25.93074 -24.85794 -22.32218 -20.48881 -18.39045 -17.91124 -16.68125 -15.97231 -15.66713 -14.71457 -14.60879 -14.53662 -13.40106 -13.09779 -12.85656 -12.78751 -12.46901 -12.16422 -11.97412 -11.73582 -11.47640 -11.07061 -10.93233 -10.80504 -10.52974 -9.81498 -9.76215 -9.44791 -9.33953 -8.45164 -8.02942 -7.67596 -5.28153 0.72877 1.63653 2.48656 2.61728 2.67153 2.71969 2.77522 3.29676 3.38637 3.45964 3.93557 4.58387 4.65349 5.44831 5.61968 5.85068 6.00276 6.04754 6.21804 6.32739 6.42513 6.57199 6.75794 6.87065 7.09492 7.20370 7.28440 7.56515 7.76831 7.88785 8.11523 8.39690 9.12482 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.010598 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.700292 B = 2641.330042 C = 3605.949398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.099 4.099 3 C -0.049 4.049 4 C -0.143 4.143 5 C 0.284 3.716 6 N -0.472 5.472 7 C 0.029 3.971 8 C -0.084 4.084 9 N 0.030 4.970 10 O -0.325 6.325 11 O -0.234 6.234 12 C 0.100 3.900 13 C -0.321 4.321 14 H 0.125 0.875 15 C 0.060 3.940 16 N -0.706 5.706 17 Si 0.929 3.071 18 H -0.244 1.244 19 H -0.261 1.261 20 H -0.262 1.262 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.130 0.870 26 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 -0.030 0.907 7.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.070 4.070 4 C -0.150 4.150 5 C -0.028 4.028 6 N -0.150 5.150 7 C 0.007 3.993 8 C -0.182 4.182 9 N 0.465 4.535 10 O -0.476 6.476 11 O -0.408 6.408 12 C 0.094 3.906 13 C -0.347 4.347 14 H 0.143 0.857 15 C -0.172 4.172 16 N -0.327 5.327 17 Si 0.750 3.250 18 H -0.167 1.167 19 H -0.186 1.186 20 H -0.186 1.186 21 H 0.095 0.905 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.134 0.866 25 H 0.148 0.852 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.129 1.949 0.732 7.427 hybrid contribution -0.310 -1.211 -0.171 1.262 sum -7.439 0.738 0.561 7.496 Atomic orbital electron populations 1.20740 0.91262 1.00710 1.02235 1.19572 0.95626 0.90868 1.04007 1.20368 0.91363 0.97721 0.97498 1.15145 0.91874 0.85215 1.22759 1.25699 0.92595 0.92656 0.91877 1.81138 1.09096 1.11522 1.13294 1.20185 0.99846 0.89483 0.89806 1.19737 0.91157 0.80626 1.26727 1.49806 1.01975 1.03687 0.98079 1.96124 0.90102 1.96285 1.65095 1.96109 1.69006 1.16730 1.58983 1.17103 0.87831 0.94137 0.91508 1.21994 1.04048 0.99169 1.09533 0.85700 1.27797 0.96754 0.98263 0.94364 1.69077 1.26515 1.31741 1.05343 0.85843 0.78199 0.79386 0.81595 1.16666 1.18595 1.18593 0.90546 0.93728 0.91814 0.86558 0.85169 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 8.27 36.01 0.30 -1.23 15 2 C -0.10 -1.89 5.58 -104.17 -0.58 -2.47 15 3 C -0.05 -0.87 9.32 -39.60 -0.37 -1.24 15 4 C -0.14 -2.70 5.75 -106.61 -0.61 -3.31 15 5 C 0.28 5.34 15.31 -22.47 -0.34 5.00 15 6 N -0.47 -9.36 18.54 41.84 0.78 -8.59 15 7 C 0.03 0.61 9.22 -39.60 -0.36 0.24 15 8 C -0.08 -1.94 6.90 -79.49 -0.55 -2.49 15 9 N 0.03 0.76 4.98 34.19 0.17 0.93 15 10 O -0.32 -8.50 19.13 -31.56 -0.60 -9.11 15 11 O -0.23 -6.05 16.44 -31.57 -0.52 -6.57 15 12 C 0.10 2.17 5.28 -106.78 -0.56 1.60 15 13 C -0.32 -6.83 6.63 -35.46 -0.23 -7.07 15 14 H 0.13 2.74 6.56 -52.49 -0.34 2.39 15 15 C 0.06 1.13 3.75 -15.20 -0.06 1.07 15 16 N -0.71 -13.45 10.75 55.98 0.60 -12.85 15 17 Si 0.93 14.25 29.68 -169.99 -5.04 9.21 15 18 H -0.24 -3.83 7.11 56.52 0.40 -3.43 15 19 H -0.26 -3.77 7.11 56.52 0.40 -3.37 15 20 H -0.26 -4.07 7.11 56.52 0.40 -3.66 15 21 H 0.08 1.28 6.58 -51.93 -0.34 0.94 15 22 H 0.04 0.62 8.08 -51.93 -0.42 0.20 15 23 H 0.06 1.05 6.39 -51.92 -0.33 0.71 15 24 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 25 H 0.13 2.60 7.54 -52.49 -0.40 2.21 15 26 H 0.31 5.05 8.28 -40.82 -0.34 4.71 15 LS Contribution 248.33 15.07 3.74 3.74 Total: -1.00 -25.43 248.33 -5.65 -31.08 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -1.39 Total: 2.04 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.38 Total: -9.89 kcal Atomic # 7 Polarization: -22.06 SS G_CDS: 1.55 Total: -20.51 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -1.12 Total: -15.68 kcal Atomic # 14 Polarization: 14.25 SS G_CDS: -5.04 Total: 9.21 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.43 -5.65 -31.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649312.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.434 kcal (2) G-P(sol) polarization free energy of solvation -25.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds