Wall clock time and date at job start Mon Mar 30 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36314 * 120.07177 * 2 1 4 4 C 1.40027 * 120.14510 * 179.97438 * 3 2 1 5 5 C 1.43199 * 119.85215 * 180.02562 * 4 3 2 6 6 N 4.78660 * 134.56325 * 0.03117 * 2 1 3 7 7 C 1.40078 * 120.29698 * 0.04281 * 4 3 2 8 8 C 1.36275 * 120.14347 * 0.02562 * 7 4 3 9 9 N 1.48028 * 120.07047 * 179.97438 * 8 7 4 10 10 O 1.31694 * 119.99876 * 359.89491 * 9 8 7 11 11 O 1.31695 * 119.99764 * 179.90020 * 9 8 7 12 12 C 1.41255 * 120.07377 * 179.72698 * 2 1 3 13 13 C 1.40396 * 120.14855 * 0.02562 * 12 2 1 14 14 H 1.07996 * 120.00139 * 227.82257 * 13 12 2 15 15 C 1.46463 * 119.99725 * 47.83188 * 13 12 2 16 16 N 1.29548 * 120.00307 * 17.02943 * 15 13 12 17 17 Si 1.86802 * 119.99814 * 197.04033 * 15 13 12 18 18 H 1.48496 * 109.47163 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47313 * 119.99943 * 17 15 13 20 20 H 1.48498 * 109.46625 * 239.99535 * 17 15 13 21 21 H 1.09000 * 109.47427 * 89.99989 * 1 2 3 22 22 H 1.08998 * 109.47721 * 329.99732 * 1 2 3 23 23 H 1.09008 * 109.46967 * 209.99555 * 1 2 3 24 24 H 1.07997 * 119.92508 * 359.97438 * 3 2 1 25 25 H 1.07994 * 119.92336 * 179.97438 * 7 4 3 26 26 H 0.96994 * 120.00366 * 173.94259 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1797 0.0000 4 6 3.5903 1.1814 0.0005 5 6 4.3015 2.4243 0.0011 6 7 4.8658 3.4103 0.0019 7 6 4.2986 -0.0271 0.0002 8 6 3.6278 -1.2133 -0.0012 9 7 4.3778 -2.4895 -0.0022 10 8 5.6947 -2.4793 -0.0038 11 8 3.7282 -3.6351 -0.0015 12 6 2.2149 -1.2224 0.0058 13 6 1.5176 -2.4409 0.0111 14 1 1.7942 -3.2184 0.7078 15 6 0.4152 -2.6579 -0.9285 16 7 0.2882 -1.8925 -1.9659 17 14 -0.8077 -4.0382 -0.6308 18 1 -0.4439 -4.7621 0.6137 19 1 -2.1723 -3.4691 -0.4920 20 1 -0.7789 -4.9809 -1.7778 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 0.8899 0.5138 23 1 -0.3633 -0.8901 0.5138 24 1 1.6500 2.1149 -0.0004 25 1 5.3785 -0.0187 0.0002 26 1 -0.3871 -2.0890 -2.6339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649312.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:35 Heat of formation + Delta-G solvation = 42.415219 kcal Electronic energy + Delta-G solvation = -15473.273040 eV Core-core repulsion = 12713.303863 eV Total energy + Delta-G solvation = -2759.969177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74844 -38.62092 -37.59508 -36.15115 -34.60533 -33.43590 -32.70080 -29.12724 -27.44200 -26.56112 -23.91935 -22.09303 -20.02365 -19.51286 -18.38750 -17.51464 -17.27375 -16.28306 -16.27001 -16.09460 -14.95616 -14.49012 -14.37850 -14.30992 -13.99190 -13.61103 -13.53668 -13.21297 -12.90006 -12.53332 -12.34594 -12.23925 -11.88707 -11.58314 -11.35598 -11.23073 -11.09904 -10.02961 -9.63356 -9.23353 -6.97430 -1.11856 0.07849 0.83555 1.07247 1.34309 1.40246 1.58775 1.72320 1.94358 2.12931 2.37866 2.98528 3.03083 3.87799 4.17926 4.33388 4.42405 4.52160 4.73322 4.82392 5.01487 5.14737 5.30110 5.38087 5.47723 5.64279 5.70744 5.90941 6.06083 6.25295 6.53171 6.65174 7.60836 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.010598 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.700292 B = 2641.330042 C = 3605.949398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.083 4.083 3 C -0.057 4.057 4 C -0.100 4.100 5 C 0.296 3.704 6 N -0.476 5.476 7 C 0.005 3.995 8 C -0.082 4.082 9 N 0.028 4.972 10 O -0.412 6.412 11 O -0.308 6.308 12 C 0.051 3.949 13 C -0.280 4.280 14 H 0.112 0.888 15 C 0.030 3.970 16 N -0.701 5.701 17 Si 0.990 3.010 18 H -0.255 1.255 19 H -0.232 1.232 20 H -0.261 1.261 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.156 0.844 25 H 0.127 0.873 26 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.910 1.873 0.469 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.077 4.077 4 C -0.108 4.108 5 C -0.016 4.016 6 N -0.154 5.154 7 C -0.017 4.017 8 C -0.187 4.187 9 N 0.430 4.570 10 O -0.540 6.540 11 O -0.461 6.461 12 C 0.046 3.954 13 C -0.309 4.309 14 H 0.129 0.871 15 C -0.202 4.202 16 N -0.323 5.323 17 Si 0.807 3.193 18 H -0.178 1.178 19 H -0.155 1.155 20 H -0.186 1.186 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.174 0.826 25 H 0.145 0.855 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.027 3.697 0.292 11.634 hybrid contribution 0.485 -1.473 -0.127 1.556 sum -10.542 2.223 0.165 10.775 Atomic orbital electron populations 1.20824 0.88840 1.02513 1.02762 1.19907 0.97188 0.89892 1.01513 1.20686 0.90580 0.98984 0.97491 1.15285 0.92602 0.84309 1.18622 1.25505 0.92199 0.92280 0.91663 1.81169 1.09262 1.12076 1.12906 1.20239 0.99978 0.89675 0.91839 1.20148 0.91848 0.80440 1.26230 1.49825 1.01579 1.03913 1.01709 1.96047 0.91265 1.96426 1.70286 1.96009 1.68783 1.18028 1.63243 1.17506 0.87568 0.95720 0.94624 1.22478 1.03184 0.98285 1.06924 0.87061 1.28497 0.97499 1.00612 0.93604 1.69006 1.26341 1.31766 1.05149 0.84991 0.77063 0.76449 0.80818 1.17836 1.15486 1.18562 0.90329 0.90247 0.91875 0.82607 0.85532 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.60 8.27 71.24 0.59 -2.01 15 2 C -0.08 -2.91 5.58 -19.57 -0.11 -3.01 15 3 C -0.06 -1.82 9.32 22.25 0.21 -1.61 15 4 C -0.10 -3.58 5.75 -21.15 -0.12 -3.70 15 5 C 0.30 10.39 15.31 88.33 1.35 11.74 15 6 N -0.48 -17.67 18.54 19.00 0.35 -17.32 15 7 C 0.01 0.23 9.22 22.26 0.21 0.43 15 8 C -0.08 -3.91 6.90 36.67 0.25 -3.66 15 9 N 0.03 1.53 4.98 -45.75 -0.23 1.30 15 10 O -0.41 -24.01 19.13 3.52 0.07 -23.95 15 11 O -0.31 -17.35 16.44 3.52 0.06 -17.29 15 12 C 0.05 2.19 5.28 -21.26 -0.11 2.08 15 13 C -0.28 -11.73 6.63 24.94 0.17 -11.57 15 14 H 0.11 4.98 6.56 -2.91 -0.02 4.97 15 15 C 0.03 1.03 3.75 87.17 0.33 1.36 15 16 N -0.70 -24.15 10.75 23.20 0.25 -23.90 15 17 Si 0.99 26.24 29.68 68.60 2.04 28.28 15 18 H -0.26 -7.25 7.11 99.48 0.71 -6.55 15 19 H -0.23 -5.17 7.11 99.48 0.71 -4.46 15 20 H -0.26 -7.02 7.11 99.48 0.71 -6.31 15 21 H 0.08 2.22 6.58 -2.39 -0.02 2.20 15 22 H 0.08 1.71 8.08 -2.39 -0.02 1.69 15 23 H 0.06 1.77 6.39 -2.38 -0.02 1.76 15 24 H 0.16 3.80 8.06 -2.91 -0.02 3.77 15 25 H 0.13 5.35 7.54 -2.91 -0.02 5.33 15 26 H 0.33 9.31 8.28 -92.71 -0.77 8.54 15 Total: -1.00 -58.41 248.33 6.53 -51.88 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.24 Total: 10.95 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 2.76 Total: -9.94 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.37 Total: -39.92 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: 0.13 Total: -41.24 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: 2.04 Total: 28.28 kcal Total: -58.41 6.53 -51.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649312.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.292 kcal (2) G-P(sol) polarization free energy of solvation -58.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds