Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36312 * 119.92635 * 2 1 4 4 C 1.41261 * 119.85159 * 179.97438 * 3 2 1 5 5 C 1.40398 * 120.14541 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99865 * 205.21894 * 5 4 3 7 7 C 1.46466 * 120.00029 * 25.22487 * 5 4 3 8 8 N 1.29548 * 119.99803 * 12.55337 * 7 5 4 9 9 Si 1.86798 * 119.99824 * 192.56141 * 7 5 4 10 10 H 1.48493 * 109.47586 * 59.99820 * 9 7 5 11 11 H 1.48501 * 109.47155 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47018 * 299.99318 * 9 7 5 13 13 C 1.41297 * 119.70796 * 359.97438 * 4 3 2 14 14 C 1.36269 * 119.84825 * 0.04625 * 13 4 3 15 15 N 1.48020 * 119.92266 * 179.97438 * 14 13 4 16 16 O 1.31694 * 120.00166 * 359.97360 * 15 14 13 17 17 O 1.31704 * 119.99620 * 179.97438 * 15 14 13 18 18 C 1.40033 * 119.92655 * 180.02562 * 2 1 3 19 19 C 1.43203 * 119.85394 * 359.97438 * 18 2 1 20 20 N 3.48365 * 80.18284 * 180.02562 * 2 1 3 21 21 H 1.09007 * 109.47220 * 89.99944 * 1 2 3 22 22 H 1.09001 * 109.47286 * 209.99294 * 1 2 3 23 23 H 1.08999 * 109.47563 * 330.00042 * 1 2 3 24 24 H 1.08001 * 120.07296 * 359.72609 * 3 2 1 25 25 H 0.97007 * 119.99595 * 180.02562 * 8 7 5 26 26 H 1.07999 * 120.07586 * 179.97438 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1870 1.1814 0.0000 4 6 3.5996 1.1795 0.0005 5 6 4.3062 2.3927 0.0011 6 1 5.3094 2.4335 -0.3970 7 6 3.6831 3.6029 0.5417 8 7 2.5918 3.5155 1.2343 9 14 4.4619 5.2724 0.2323 10 1 4.5273 5.5249 -1.2295 11 1 3.6438 6.3282 0.8814 12 1 5.8340 5.2913 0.7999 13 6 4.2982 -0.0486 0.0016 14 6 3.6062 -1.2225 0.0012 15 7 4.3364 -2.5101 0.0018 16 8 5.6533 -2.5203 0.0022 17 8 3.6691 -3.6455 0.0019 18 6 2.2055 -1.2136 -0.0005 19 6 1.4848 -2.4510 -0.0005 20 7 0.9130 -3.4326 -0.0015 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5137 23 1 -0.3634 0.8899 0.5138 24 1 1.6470 2.1167 -0.0045 25 1 2.1789 4.3172 1.5920 26 1 5.3782 -0.0570 0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = 42.804571 kcal Electronic energy + Delta-G solvation = -15226.802197 eV Core-core repulsion = 12466.849904 eV Total energy + Delta-G solvation = -2759.952293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97745 -39.27739 -37.36411 -35.86211 -35.50281 -33.96466 -32.57121 -28.38705 -27.98179 -27.36252 -23.53173 -22.27224 -19.92061 -19.87646 -19.04882 -18.02553 -17.19892 -17.08640 -16.32189 -15.33796 -15.04144 -14.82190 -14.07704 -13.91621 -13.87579 -13.59050 -13.29501 -13.18992 -13.06728 -12.64289 -12.61577 -12.45265 -12.18810 -11.90920 -11.90497 -11.74402 -11.28984 -10.07248 -9.79021 -9.07588 -6.71831 -1.72984 0.17254 0.21384 0.69731 1.42251 1.46653 1.58993 1.92590 2.06462 2.13405 2.57636 3.20820 3.26749 3.76786 4.17174 4.23246 4.48242 4.53124 4.61934 4.76369 4.80136 4.95783 5.10101 5.21715 5.49689 5.61959 5.77060 5.78644 6.17476 6.29688 6.43893 6.77963 7.81140 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.031171 B = 0.008228 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.062328 B = 3402.033975 C = 4226.939789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.001 4.001 3 C -0.162 4.162 4 C 0.079 3.921 5 C -0.397 4.397 6 H 0.115 0.885 7 C 0.036 3.964 8 N -0.743 5.743 9 Si 1.000 3.000 10 H -0.252 1.252 11 H -0.262 1.262 12 H -0.255 1.255 13 C -0.145 4.145 14 C 0.074 3.926 15 N -0.012 5.012 16 O -0.171 6.171 17 O -0.243 6.243 18 C -0.188 4.188 19 C 0.285 3.715 20 N -0.486 5.486 21 H 0.084 0.916 22 H 0.051 0.949 23 H 0.090 0.910 24 H 0.146 0.854 25 H 0.317 0.683 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 10.299 -1.001 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.004 4.004 3 C -0.182 4.182 4 C 0.075 3.925 5 C -0.421 4.421 6 H 0.133 0.867 7 C -0.193 4.193 8 N -0.362 5.362 9 Si 0.818 3.182 10 H -0.175 1.175 11 H -0.186 1.186 12 H -0.179 1.179 13 C -0.167 4.167 14 C -0.014 4.014 15 N 0.460 4.540 16 O -0.371 6.371 17 O -0.421 6.421 18 C -0.195 4.195 19 C -0.025 4.025 20 N -0.165 5.165 21 H 0.103 0.897 22 H 0.070 0.930 23 H 0.109 0.891 24 H 0.164 0.836 25 H 0.131 0.869 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.443 9.327 -0.836 9.475 hybrid contribution 0.821 0.013 0.113 0.828 sum -0.623 9.340 -0.723 9.389 Atomic orbital electron populations 1.20810 0.89394 1.02952 1.03230 1.19374 0.96453 0.89635 0.94945 1.21286 0.93680 0.97001 1.06231 1.17815 0.92863 0.91157 0.90689 1.21691 1.01930 0.91026 1.27432 0.86733 1.28479 0.94306 1.05313 0.91188 1.69045 1.14679 1.36090 1.16412 0.84919 0.79455 0.73200 0.80600 1.17540 1.18560 1.17881 1.21079 1.00807 0.89199 1.05612 1.20110 0.90181 0.79397 1.11733 1.51075 1.02793 1.05463 0.94669 1.96139 0.90254 1.96399 1.54355 1.96260 1.67420 1.18774 1.59624 1.14923 0.87534 0.88185 1.28871 1.25484 0.92430 0.92170 0.92418 1.80973 1.11771 1.10404 1.13385 0.89748 0.93005 0.89090 0.83612 0.86942 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.37 9.59 71.23 0.68 -2.69 15 2 C 0.00 -0.03 5.87 -19.88 -0.12 -0.14 15 3 C -0.16 -6.38 8.33 22.56 0.19 -6.19 15 4 C 0.08 3.23 5.62 -21.26 -0.12 3.11 15 5 C -0.40 -14.81 9.31 24.94 0.23 -14.58 15 6 H 0.11 3.90 7.96 -2.91 -0.02 3.87 15 7 C 0.04 1.22 5.40 87.17 0.47 1.69 15 8 N -0.74 -26.03 10.84 23.20 0.25 -25.77 15 9 Si 1.00 24.78 29.66 68.60 2.03 26.81 15 10 H -0.25 -6.20 7.11 99.48 0.71 -5.50 15 11 H -0.26 -6.14 7.11 99.48 0.71 -5.43 15 12 H -0.25 -6.36 7.11 99.48 0.71 -5.65 15 13 C -0.15 -6.01 9.28 22.56 0.21 -5.80 15 14 C 0.07 3.31 6.86 36.36 0.25 3.56 15 15 N -0.01 -0.55 4.98 -46.49 -0.23 -0.79 15 16 O -0.17 -7.72 19.12 3.52 0.07 -7.65 15 17 O -0.24 -12.38 16.85 3.51 0.06 -12.32 15 18 C -0.19 -8.25 5.75 -21.15 -0.12 -8.37 15 19 C 0.29 13.15 11.08 88.33 0.98 14.13 15 20 N -0.49 -23.13 18.23 19.01 0.35 -22.78 15 21 H 0.08 2.37 8.14 -2.38 -0.02 2.35 15 22 H 0.05 1.70 7.07 -2.39 -0.02 1.68 15 23 H 0.09 2.48 8.08 -2.39 -0.02 2.47 15 24 H 0.15 5.51 6.04 -2.91 -0.02 5.49 15 25 H 0.32 9.51 8.27 -92.70 -0.77 8.74 15 26 H 0.15 5.58 7.54 -2.91 -0.02 5.55 15 Total: -1.00 -50.64 251.20 6.42 -44.22 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.24 Total: 13.58 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 2.65 Total: -15.30 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.37 Total: -49.34 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.13 Total: -19.97 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: 2.03 Total: 26.81 kcal Total: -50.64 6.42 -44.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.023 kcal (2) G-P(sol) polarization free energy of solvation -50.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds