Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38500 * 119.94857 * 2 1 4 4 C 1.38613 * 121.31440 * 180.02562 * 3 2 1 5 5 N 1.48013 * 119.41512 * 179.97438 * 4 3 2 6 6 O 1.31695 * 120.00270 * 0.02562 * 5 4 3 7 7 O 1.31707 * 120.00208 * 179.97438 * 5 4 3 8 8 C 1.37545 * 121.16954 * 359.97438 * 4 3 2 9 9 C 1.41156 * 119.78677 * 359.97438 * 8 4 3 10 10 C 1.40183 * 120.61957 * 180.02562 * 9 8 4 11 11 H 1.08000 * 120.00585 * 155.75791 * 10 9 8 12 12 C 1.46512 * 119.99941 * 335.75284 * 10 9 8 13 13 N 1.29527 * 120.00146 * 344.85619 * 12 10 9 14 14 Si 1.86809 * 119.99888 * 164.85444 * 12 10 9 15 15 H 1.48496 * 109.47021 * 60.00115 * 14 12 10 16 16 H 1.48495 * 109.46869 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46714 * 299.99966 * 14 12 10 18 18 C 1.38975 * 119.95262 * 179.97438 * 2 1 3 19 19 C 1.43210 * 120.56522 * 359.72162 * 18 2 1 20 20 N 3.48650 * 80.59027 * 179.80158 * 2 1 3 21 21 H 1.09003 * 109.46887 * 270.02115 * 1 2 3 22 22 H 1.08993 * 109.46950 * 30.02220 * 1 2 3 23 23 H 1.09002 * 109.47015 * 150.02379 * 1 2 3 24 24 H 1.07998 * 119.34541 * 0.02562 * 3 2 1 25 25 H 1.07998 * 120.10952 * 180.02562 * 8 4 3 26 26 H 0.97001 * 119.99890 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.2001 0.0000 4 6 3.5842 1.2331 -0.0005 5 7 4.2802 2.5394 -0.0011 6 8 3.5833 3.6568 -0.0006 7 8 5.5965 2.5843 -0.0011 8 6 4.3240 0.0735 -0.0005 9 6 3.6683 -1.1765 0.0005 10 6 4.4050 -2.3692 0.0011 11 1 3.9634 -3.2766 0.3858 12 6 5.7740 -2.3848 -0.5205 13 7 6.2038 -1.3981 -1.2412 14 14 6.8997 -3.8278 -0.1461 15 1 6.2983 -5.0763 -0.6797 16 1 8.2213 -3.6033 -0.7849 17 1 7.0742 -3.9511 1.3235 18 6 2.2009 -1.2041 0.0005 19 6 1.4961 -2.4508 0.0071 20 7 0.9370 -3.4396 0.0119 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8897 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6470 2.1286 0.0004 25 1 5.4030 0.1192 -0.0005 26 1 7.1101 -1.4086 -1.5868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650860.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = 49.298662 kcal Electronic energy + Delta-G solvation = -15180.217642 eV Core-core repulsion = 12420.546954 eV Total energy + Delta-G solvation = -2759.670688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.00376 -37.52032 -35.40092 -34.69279 -33.61445 -32.10247 -30.99570 -26.81491 -26.12117 -25.89579 -21.72898 -21.00557 -18.17586 -17.79224 -17.24060 -16.82500 -15.65561 -15.13976 -14.70654 -13.71470 -13.53197 -13.39942 -12.82478 -12.44066 -12.25213 -12.06833 -11.93150 -11.61142 -11.49849 -11.24167 -10.98534 -10.95675 -10.60444 -10.31639 -10.26825 -9.97201 -9.95078 -8.39451 -8.21632 -7.70512 -5.18438 0.14726 1.86715 2.08215 2.16064 2.64498 2.69642 2.75064 3.33696 3.57724 3.62005 4.00274 4.79495 5.01732 5.31983 5.56470 5.77166 5.95963 6.02567 6.06409 6.17389 6.22422 6.35718 6.63331 6.75674 6.98109 7.17668 7.23296 7.54669 7.68351 7.75125 7.93369 8.48371 9.15008 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.011735 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.834900 B = 2385.469254 C = 3870.750159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.024 3.976 3 C -0.237 4.237 4 C 0.053 3.947 5 N -0.007 5.007 6 O -0.207 6.207 7 O -0.196 6.196 8 C -0.088 4.088 9 C 0.125 3.875 10 C -0.387 4.387 11 H 0.103 0.897 12 C 0.063 3.937 13 N -0.720 5.720 14 Si 0.933 3.067 15 H -0.254 1.254 16 H -0.266 1.266 17 H -0.251 1.251 18 C -0.173 4.173 19 C 0.298 3.702 20 N -0.491 5.491 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.126 0.874 25 H 0.157 0.843 26 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 -0.630 0.961 1.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.021 3.979 3 C -0.258 4.258 4 C -0.034 4.034 5 N 0.467 4.533 6 O -0.397 6.397 7 O -0.388 6.388 8 C -0.110 4.110 9 C 0.119 3.881 10 C -0.412 4.412 11 H 0.121 0.879 12 C -0.169 4.169 13 N -0.338 5.338 14 Si 0.754 3.246 15 H -0.178 1.178 16 H -0.190 1.190 17 H -0.174 1.174 18 C -0.179 4.179 19 C -0.012 4.012 20 N -0.170 5.170 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.144 0.856 25 H 0.174 0.826 26 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.949 -2.564 0.804 2.850 hybrid contribution 1.045 0.414 -0.013 1.124 sum 0.097 -2.150 0.790 2.293 Atomic orbital electron populations 1.20808 0.91586 1.02457 1.02222 1.19089 0.94399 0.90463 0.93979 1.19651 0.90154 0.97983 1.18021 1.20289 0.92155 0.79040 1.11905 1.50846 1.02760 1.05027 0.94679 1.96167 1.65545 1.20986 1.57001 1.96209 0.89908 1.96342 1.56324 1.21578 1.01563 0.88819 0.99013 1.18090 0.88520 0.91767 0.89742 1.21184 0.95098 0.96215 1.28663 0.87891 1.27796 0.98692 0.98488 0.91915 1.69007 1.19399 1.29417 1.15990 0.85894 0.77889 0.79713 0.81109 1.17750 1.19044 1.17433 1.16695 0.91320 0.85655 1.24215 1.25425 0.91696 0.92327 0.91736 1.81071 1.10777 1.11060 1.14129 0.91110 0.91262 0.91929 0.85578 0.82604 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.61 36.01 0.35 -1.40 15 2 C 0.02 0.46 5.91 -104.25 -0.62 -0.15 15 3 C -0.24 -4.76 9.19 -39.35 -0.36 -5.12 15 4 C 0.05 1.16 6.86 -80.06 -0.55 0.61 15 5 N -0.01 -0.16 4.98 33.91 0.17 0.01 15 6 O -0.21 -4.65 19.07 -31.57 -0.60 -5.25 15 7 O -0.20 -4.56 19.09 -31.57 -0.60 -5.16 15 8 C -0.09 -1.98 8.30 -38.73 -0.32 -2.30 15 9 C 0.12 2.76 5.78 -104.62 -0.60 2.16 15 10 C -0.39 -8.32 8.86 -35.52 -0.31 -8.63 15 11 H 0.10 2.17 7.43 -52.49 -0.39 1.78 15 12 C 0.06 1.25 5.37 -15.19 -0.08 1.16 15 13 N -0.72 -14.75 10.95 55.98 0.61 -14.14 15 14 Si 0.93 14.82 29.67 -169.99 -5.04 9.78 15 15 H -0.25 -4.09 7.11 56.52 0.40 -3.69 15 16 H -0.27 -4.06 7.11 56.52 0.40 -3.65 15 17 H -0.25 -3.97 7.11 56.52 0.40 -3.57 15 18 C -0.17 -3.61 5.93 -104.25 -0.62 -4.23 15 19 C 0.30 6.25 12.77 -22.47 -0.29 5.97 15 20 N -0.49 -10.61 18.54 41.83 0.78 -9.83 15 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.07 0.92 8.08 -51.93 -0.42 0.50 15 23 H 0.06 0.97 7.10 -51.93 -0.37 0.60 15 24 H 0.13 2.35 7.49 -52.49 -0.39 1.96 15 25 H 0.16 3.58 5.57 -52.49 -0.29 3.28 15 26 H 0.31 5.59 8.27 -40.82 -0.34 5.25 15 LS Contribution 254.27 15.07 3.83 3.83 Total: -1.00 -23.97 254.27 -5.69 -29.66 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -1.42 Total: 3.03 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.41 Total: -11.93 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 1.56 Total: -23.96 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.20 Total: -10.41 kcal Atomic # 14 Polarization: 14.82 SS G_CDS: -5.04 Total: 9.78 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -23.97 -5.69 -29.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650860.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.957 kcal (2) G-P(sol) polarization free energy of solvation -23.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds