Wall clock time and date at job start Mon Mar 30 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.28551 * 125.42473 * 2 1 4 4 C 1.47843 * 110.21770 * 180.18859 * 3 2 1 5 5 N 1.30041 * 125.97114 * 179.81841 * 4 3 2 6 6 S 1.65601 * 120.00200 * 179.71566 * 5 4 3 7 7 O 1.52206 * 109.46954 * 60.00046 * 6 5 4 8 8 O 1.42105 * 109.47015 * 300.00485 * 6 5 4 9 9 C 1.76202 * 109.47247 * 180.02562 * 6 5 4 10 10 H 1.07999 * 119.99900 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99842 * 179.97438 * 9 6 5 12 12 N 1.31513 * 119.99854 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00016 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46954 * 60.00173 * 13 11 9 15 15 H 1.48494 * 109.47361 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46962 * 300.00402 * 13 11 9 17 17 N 1.38195 * 108.05983 * 359.56016 * 4 3 2 18 18 C 1.46562 * 125.42807 * 179.71441 * 2 1 3 19 19 H 1.09000 * 109.46690 * 270.27998 * 1 2 3 20 20 H 1.08989 * 109.47187 * 30.28386 * 1 2 3 21 21 H 1.08999 * 109.46566 * 150.28531 * 1 2 3 22 22 H 1.08001 * 124.89015 * 0.02562 * 3 2 1 23 23 H 0.96699 * 113.99307 * 60.00434 * 7 6 5 24 24 H 0.97009 * 119.99873 * 180.02562 * 12 11 9 25 25 H 0.96996 * 127.02188 * 180.22101 * 17 4 3 26 26 H 1.09001 * 110.02597 * 60.67529 * 18 2 1 27 27 H 1.08999 * 110.02715 * 299.25701 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2102 1.0475 0.0000 4 6 3.6368 0.6597 -0.0046 5 7 4.6499 1.4750 -0.0091 6 16 6.1941 0.8768 -0.0067 7 8 6.4075 0.0182 -1.2453 8 8 6.3943 0.0868 1.1574 9 6 7.3419 2.2137 -0.0131 10 1 6.9840 3.2326 -0.0173 11 6 8.6970 1.9589 -0.0117 12 7 9.1327 0.7180 -0.0061 13 14 9.9138 3.3761 -0.0193 14 1 9.7051 4.2141 1.1888 15 1 11.2985 2.8397 -0.0170 16 1 9.7051 4.2013 -1.2362 17 7 3.7056 -0.7205 0.0027 18 6 2.3146 -1.1942 0.0060 19 1 -0.3633 0.0050 1.0277 20 1 -0.3633 0.8873 -0.5182 21 1 -0.3632 -0.8926 -0.5094 22 1 1.8464 2.0644 0.0004 23 1 6.2869 0.4935 -2.0787 24 1 10.0861 0.5388 -0.0048 25 1 4.5082 -1.2652 0.0049 26 1 2.1223 -1.7936 -0.8839 27 1 2.1232 -1.7841 0.9023 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725611602.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:22 Heat of formation + Delta-G solvation = 12.018463 kcal Electronic energy + Delta-G solvation = -14688.873904 eV Core-core repulsion = 11997.604666 eV Total energy + Delta-G solvation = -2691.269239 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.062 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.95871 -37.04279 -34.85341 -34.20694 -33.55447 -31.07139 -27.37148 -26.77134 -25.34121 -21.36984 -19.88176 -19.62198 -18.85246 -17.20412 -15.95096 -15.21874 -14.97115 -14.80801 -14.49730 -14.07545 -13.54611 -13.17043 -12.66943 -12.61712 -12.09762 -11.64452 -11.52230 -11.49778 -11.16477 -10.95694 -10.90378 -10.73446 -9.79936 -9.60012 -9.16233 -8.27825 -7.85635 -7.30899 -6.02825 -4.12010 1.35102 2.78959 2.87320 2.92759 3.44210 3.79477 4.04785 4.13241 4.24103 4.62035 5.13466 5.56217 5.62096 5.82014 5.87205 6.04252 6.17037 6.54159 6.74695 6.80146 6.90790 7.48369 7.66441 8.12054 8.24370 8.48127 9.18082 9.54125 9.63039 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.068470 B = 0.007095 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.841008 B = 3945.640343 C = 4166.548887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.138 3.862 2 N -0.612 5.612 3 C -0.163 4.163 4 C 0.301 3.699 5 N -0.963 5.963 6 S 2.431 3.569 7 O -0.890 6.890 8 O -0.959 6.959 9 C -0.920 4.920 10 H 0.135 0.865 11 C 0.112 3.888 12 N -0.826 5.826 13 Si 0.947 3.053 14 H -0.256 1.256 15 H -0.272 1.272 16 H -0.257 1.257 17 N -0.794 5.794 18 C 0.382 3.618 19 H 0.029 0.971 20 H 0.058 0.942 21 H 0.050 0.950 22 H 0.136 0.864 23 H 0.439 0.561 24 H 0.302 0.698 25 H 0.408 0.592 26 H 0.024 0.976 27 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 0.184 -4.606 6.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.331 5.331 3 C -0.299 4.299 4 C 0.083 3.917 5 N -0.857 5.857 6 S 2.546 3.454 7 O -0.740 6.740 8 O -0.946 6.946 9 C -1.060 5.060 10 H 0.153 0.847 11 C -0.110 4.110 12 N -0.454 5.454 13 Si 0.768 3.232 14 H -0.180 1.180 15 H -0.197 1.197 16 H -0.181 1.181 17 N -0.444 5.444 18 C 0.167 3.833 19 H 0.047 0.953 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.154 0.846 23 H 0.302 0.698 24 H 0.113 0.887 25 H 0.248 0.752 26 H 0.041 0.959 27 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.436 -0.698 -4.064 6.056 hybrid contribution 1.284 0.202 -0.228 1.319 sum -3.152 -0.496 -4.292 5.348 Atomic orbital electron populations 1.20987 0.78914 1.01055 0.99670 1.42696 1.03005 1.04572 1.82867 1.20107 0.84451 0.90953 1.34373 1.19110 0.91971 0.78545 1.02104 1.74713 1.06137 1.33928 1.70907 1.12744 0.80692 0.75502 0.76428 1.85838 1.93575 1.61843 1.32736 1.93325 1.88017 1.69601 1.43661 1.29071 1.01072 1.08799 1.67073 0.84709 1.25187 0.98756 0.98464 0.88582 1.69940 1.19482 1.19492 1.36502 0.85735 0.77168 0.79530 0.80764 1.17965 1.19707 1.18081 1.45775 1.06355 1.06344 1.85919 1.20561 0.78634 0.86865 0.97211 0.95292 0.92307 0.93089 0.84646 0.69803 0.88740 0.75155 0.95926 0.96273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 1.90 11.13 59.85 0.67 2.57 15 2 N -0.61 -11.76 3.20 -183.64 -0.59 -12.34 15 3 C -0.16 -3.63 11.46 -15.00 -0.17 -3.80 15 4 C 0.30 7.35 7.89 -154.18 -1.22 6.13 15 5 N -0.96 -23.83 11.07 32.52 0.36 -23.47 15 6 S 2.43 59.94 3.78 -107.50 -0.41 59.54 15 7 O -0.89 -19.03 13.23 -58.38 -0.77 -19.80 15 8 O -0.96 -28.27 17.69 -58.38 -1.03 -29.30 15 9 C -0.92 -22.33 9.99 30.60 0.31 -22.02 15 10 H 0.14 3.05 7.81 -52.49 -0.41 2.64 15 11 C 0.11 2.65 5.46 -17.82 -0.10 2.56 15 12 N -0.83 -20.80 13.16 55.43 0.73 -20.07 15 13 Si 0.95 17.75 29.54 -169.99 -5.02 12.73 15 14 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 15 H -0.27 -4.89 7.11 56.52 0.40 -4.48 15 16 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 17 N -0.79 -17.81 6.42 -61.39 -0.39 -18.21 15 18 C 0.38 7.30 8.39 -63.20 -0.53 6.77 15 19 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 15 20 H 0.06 0.74 8.12 -51.94 -0.42 0.32 15 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.14 2.89 8.06 -52.49 -0.42 2.47 15 23 H 0.44 6.82 9.03 67.38 0.61 7.43 15 24 H 0.30 6.81 8.31 -40.82 -0.34 6.47 15 25 H 0.41 9.15 7.64 -40.82 -0.31 8.84 15 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 LS Contribution 255.27 15.07 3.85 3.85 Total: -1.00 -33.58 255.27 -6.11 -39.69 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -1.78 Total: 15.19 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.04 Total: -7.79 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: 0.11 Total: -74.10 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -1.80 Total: -49.10 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.73 kcal Atomic # 16 Polarization: 59.94 SS G_CDS: -0.41 Total: 59.54 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.58 -6.11 -39.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725611602.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.706 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds