Wall clock time and date at job start Mon Mar 30 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47328 * 270.00235 * 3 2 1 5 5 H 1.48504 * 109.46702 * 30.00096 * 3 2 1 6 6 H 1.48499 * 109.47146 * 150.00066 * 3 2 1 7 7 C 1.38744 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00252 * 0.02562 * 7 2 1 9 9 O 1.34921 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.34314 * 116.99938 * 179.97438 * 9 7 2 11 11 O 1.21207 * 120.00277 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99951 * 179.72575 * 10 9 7 13 13 C 1.53886 * 113.58897 * 279.22027 * 12 10 9 14 14 C 1.53427 * 86.82421 * 220.45223 * 13 12 10 15 15 C 1.52456 * 128.60590 * 165.09465 * 14 13 12 16 16 C 1.52457 * 128.52180 * 245.01419 * 14 13 12 17 17 F 1.39904 * 117.51395 * 349.80558 * 16 14 13 18 18 F 1.39899 * 117.51282 * 134.86698 * 16 14 13 19 19 C 1.53262 * 87.71831 * 25.01687 * 14 13 12 20 20 H 0.97002 * 119.99690 * 359.97438 * 1 2 3 21 21 H 1.09000 * 112.82918 * 50.33393 * 12 10 9 22 22 H 1.08998 * 113.64821 * 334.92318 * 13 12 10 23 23 H 1.09000 * 113.64582 * 105.93536 * 13 12 10 24 24 H 1.09001 * 117.51482 * 224.96175 * 15 14 13 25 25 H 1.09003 * 117.51515 * 10.06635 * 15 14 13 26 26 H 1.09000 * 113.64400 * 220.48543 * 19 14 13 27 27 H 1.09002 * 113.64673 * 89.48356 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4959 2.0466 -1.4000 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4403 0.7000 7 6 2.0082 -1.2015 -0.0005 8 1 1.4684 -2.1368 -0.0014 9 8 3.3575 -1.2015 -0.0011 10 6 3.9673 -2.3982 -0.0010 11 8 3.3072 -3.4148 -0.0010 12 6 5.4722 -2.4770 -0.0078 13 6 6.0925 -2.2869 -1.4033 14 6 7.0713 -3.4069 -1.0270 15 6 7.9898 -4.2134 -1.9382 16 6 8.5822 -3.3247 -0.8409 17 9 9.2192 -2.1444 -1.2389 18 9 9.1308 -3.9586 0.2791 19 6 6.0133 -3.9172 -0.0425 20 1 -0.4850 0.8401 0.0004 21 1 5.9317 -1.8569 0.7619 22 1 5.4203 -2.5498 -2.2200 23 1 6.5695 -1.3165 -1.5411 24 1 8.0277 -5.2923 -1.7875 25 1 8.0964 -3.8783 -2.9699 26 1 6.4267 -4.2519 0.9088 27 1 5.3190 -4.6347 -0.4799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849978652.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:32 Heat of formation + Delta-G solvation = -123.405817 kcal Electronic energy + Delta-G solvation = -16005.329352 eV Core-core repulsion = 12787.480449 eV Total energy + Delta-G solvation = -3217.848903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.070 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.73882 -47.42198 -39.99749 -38.31576 -35.34120 -33.20880 -32.29670 -26.39115 -25.78107 -23.88361 -22.74299 -19.93748 -18.97569 -17.97850 -17.76973 -16.96236 -16.41994 -16.05900 -15.25601 -14.85374 -14.17258 -14.10320 -13.92153 -13.76762 -13.56263 -12.98247 -12.47333 -12.40881 -12.34793 -11.77771 -11.67201 -11.21504 -10.58354 -10.43285 -10.37392 -10.33691 -9.89898 -9.71175 -9.13835 -8.69261 -6.38294 -4.14154 2.87980 2.94305 3.09931 3.23805 3.32483 3.38307 3.83282 3.94796 4.23468 4.34321 4.45075 4.54344 4.76463 5.11381 5.21923 5.26916 5.37421 5.59142 5.70465 5.78194 5.92015 6.00740 6.24530 6.44564 7.72264 8.02421 8.59806 9.00220 9.67708 10.70168 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.042972 B = 0.006351 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.437872 B = 4407.417117 C = 4798.403511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.383 4.383 8 H 0.109 0.891 9 O -0.249 6.249 10 C 0.418 3.582 11 O -0.538 6.538 12 C -0.097 4.097 13 C -0.076 4.076 14 C -0.166 4.166 15 C -0.155 4.155 16 C 0.217 3.783 17 F -0.160 7.160 18 F -0.161 7.161 19 C -0.070 4.070 20 H 0.279 0.721 21 H 0.116 0.884 22 H 0.105 0.895 23 H 0.086 0.914 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.450 -4.640 -3.229 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.459 4.459 8 H 0.127 0.873 9 O -0.157 6.157 10 C 0.264 3.736 11 O -0.433 6.433 12 C -0.116 4.116 13 C -0.114 4.114 14 C -0.167 4.167 15 C -0.192 4.192 16 C 0.181 3.819 17 F -0.141 7.141 18 F -0.141 7.141 19 C -0.107 4.107 20 H 0.090 0.910 21 H 0.134 0.866 22 H 0.123 0.877 23 H 0.105 0.895 24 H 0.142 0.858 25 H 0.142 0.858 26 H 0.100 0.900 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.111 -4.734 -3.196 17.094 hybrid contribution 0.437 0.882 0.165 0.998 sum 16.549 -3.853 -3.031 17.259 Atomic orbital electron populations 1.69611 1.05726 1.28414 1.47634 1.24550 0.95000 0.98686 0.95518 0.86227 0.80333 0.81506 0.78956 1.19826 1.20760 1.18367 1.20661 0.76252 0.96948 1.51993 0.87333 1.83530 1.23882 1.31423 1.76866 1.22610 0.89862 0.82619 0.78535 1.90589 1.66706 1.36353 1.49683 1.22121 0.90566 0.99162 0.99795 1.22476 0.95003 0.97024 0.96855 1.23678 0.89546 1.01877 1.01603 1.24204 0.98277 0.99848 0.96886 1.19898 0.90119 0.84049 0.87865 1.93020 1.83517 1.47375 1.90160 1.93015 1.87121 1.81006 1.52956 1.22447 0.94014 0.96167 0.98094 0.91029 0.86588 0.87678 0.89520 0.85832 0.85842 0.89981 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.96 55.48 0.77 -25.09 15 2 C 0.07 1.89 5.49 -17.53 -0.10 1.80 15 3 Si 0.90 21.35 28.62 -169.99 -4.86 16.48 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.26 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.38 -11.34 10.10 30.92 0.31 -11.03 15 8 H 0.11 3.54 7.09 -52.49 -0.37 3.17 15 9 O -0.25 -6.51 8.58 -20.72 -0.18 -6.68 15 10 C 0.42 9.57 7.43 36.01 0.27 9.84 15 11 O -0.54 -13.86 15.14 -19.05 -0.29 -14.15 15 12 C -0.10 -1.60 4.25 -90.85 -0.39 -1.98 15 13 C -0.08 -1.05 7.66 -26.05 -0.20 -1.25 15 14 C -0.17 -2.00 3.05 -154.71 -0.47 -2.47 15 15 C -0.15 -1.43 10.50 -26.95 -0.28 -1.72 15 16 C 0.22 2.58 5.26 -26.95 -0.14 2.43 15 17 F -0.16 -2.06 17.60 2.25 0.04 -2.02 15 18 F -0.16 -2.05 17.60 2.25 0.04 -2.01 15 19 C -0.07 -0.97 7.42 -26.13 -0.19 -1.16 15 20 H 0.28 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.12 1.74 8.14 -51.93 -0.42 1.32 15 22 H 0.10 1.45 8.09 -51.93 -0.42 1.03 15 23 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.12 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.12 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 27 H 0.11 1.66 7.44 -51.93 -0.39 1.28 15 LS Contribution 255.62 15.07 3.85 3.85 Total: -1.00 -32.09 255.62 -4.24 -36.33 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -2.43 Total: -1.17 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.19 Total: -5.54 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.77 Total: -25.09 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.47 Total: -20.83 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.09 -4.24 -36.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849978652.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.073 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds