Wall clock time and date at job start Mon Mar 30 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47328 * 270.00235 * 3 2 1 5 5 H 1.48504 * 109.46702 * 30.00096 * 3 2 1 6 6 H 1.48499 * 109.47146 * 150.00066 * 3 2 1 7 7 C 1.38744 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00252 * 0.02562 * 7 2 1 9 9 O 1.34921 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.34314 * 116.99938 * 179.97438 * 9 7 2 11 11 O 1.21207 * 120.00277 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99951 * 179.72575 * 10 9 7 13 13 C 1.53886 * 113.58897 * 279.22027 * 12 10 9 14 14 C 1.53427 * 86.82421 * 220.45223 * 13 12 10 15 15 C 1.52456 * 128.60590 * 165.09465 * 14 13 12 16 16 C 1.52457 * 128.52180 * 245.01419 * 14 13 12 17 17 F 1.39904 * 117.51395 * 349.80558 * 16 14 13 18 18 F 1.39899 * 117.51282 * 134.86698 * 16 14 13 19 19 C 1.53262 * 87.71831 * 25.01687 * 14 13 12 20 20 H 0.97002 * 119.99690 * 359.97438 * 1 2 3 21 21 H 1.09000 * 112.82918 * 50.33393 * 12 10 9 22 22 H 1.08998 * 113.64821 * 334.92318 * 13 12 10 23 23 H 1.09000 * 113.64582 * 105.93536 * 13 12 10 24 24 H 1.09001 * 117.51482 * 224.96175 * 15 14 13 25 25 H 1.09003 * 117.51515 * 10.06635 * 15 14 13 26 26 H 1.09000 * 113.64400 * 220.48543 * 19 14 13 27 27 H 1.09002 * 113.64673 * 89.48356 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4959 2.0466 -1.4000 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4403 0.7000 7 6 2.0082 -1.2015 -0.0005 8 1 1.4684 -2.1368 -0.0014 9 8 3.3575 -1.2015 -0.0011 10 6 3.9673 -2.3982 -0.0010 11 8 3.3072 -3.4148 -0.0010 12 6 5.4722 -2.4770 -0.0078 13 6 6.0925 -2.2869 -1.4033 14 6 7.0713 -3.4069 -1.0270 15 6 7.9898 -4.2134 -1.9382 16 6 8.5822 -3.3247 -0.8409 17 9 9.2192 -2.1444 -1.2389 18 9 9.1308 -3.9586 0.2791 19 6 6.0133 -3.9172 -0.0425 20 1 -0.4850 0.8401 0.0004 21 1 5.9317 -1.8569 0.7619 22 1 5.4203 -2.5498 -2.2200 23 1 6.5695 -1.3165 -1.5411 24 1 8.0277 -5.2923 -1.7875 25 1 8.0964 -3.8783 -2.9699 26 1 6.4267 -4.2519 0.9088 27 1 5.3190 -4.6347 -0.4799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849978652.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:31 Heat of formation + Delta-G solvation = -143.009281 kcal Electronic energy + Delta-G solvation = -16006.179422 eV Core-core repulsion = 12787.480449 eV Total energy + Delta-G solvation = -3218.698973 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.65677 -48.34862 -41.58623 -39.80652 -37.30338 -34.54183 -34.23644 -28.30874 -26.91163 -25.56346 -23.56905 -21.51701 -20.23528 -20.06291 -18.77673 -18.62711 -17.43246 -17.11214 -16.98868 -16.62165 -15.97670 -15.18808 -15.02737 -14.73809 -14.68387 -14.47273 -14.30192 -13.63248 -13.60183 -13.25021 -13.19550 -12.74518 -12.37510 -12.25997 -11.87716 -11.53269 -11.43880 -11.01407 -10.84135 -10.78943 -8.55765 -6.42762 1.26723 1.33950 1.51219 1.56370 1.96274 2.09150 2.26555 2.42448 2.86122 2.91546 3.28614 3.35627 3.52366 3.63135 4.15723 4.31196 4.45123 4.60617 4.63901 4.68701 4.84836 4.89534 4.91681 5.14918 5.48076 5.88478 6.52091 6.81594 7.58739 8.57233 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.042972 B = 0.006351 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.437872 B = 4407.417117 C = 4798.403511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.410 4.410 8 H 0.057 0.943 9 O -0.257 6.257 10 C 0.420 3.580 11 O -0.572 6.572 12 C -0.103 4.103 13 C -0.072 4.072 14 C -0.168 4.168 15 C -0.122 4.122 16 C 0.207 3.793 17 F -0.167 7.167 18 F -0.168 7.168 19 C -0.067 4.067 20 H 0.289 0.711 21 H 0.135 0.865 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.094 0.906 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.099 -3.817 -3.956 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.486 4.486 8 H 0.075 0.925 9 O -0.166 6.166 10 C 0.267 3.733 11 O -0.468 6.468 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.169 4.169 15 C -0.159 4.159 16 C 0.171 3.829 17 F -0.148 7.148 18 F -0.148 7.148 19 C -0.104 4.104 20 H 0.099 0.901 21 H 0.153 0.847 22 H 0.120 0.880 23 H 0.119 0.881 24 H 0.164 0.836 25 H 0.165 0.835 26 H 0.112 0.888 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.761 -3.940 -3.926 19.568 hybrid contribution -0.396 0.470 0.410 0.738 sum 18.365 -3.470 -3.517 19.018 Atomic orbital electron populations 1.69710 1.07614 1.30237 1.48157 1.25577 0.95957 1.02732 0.94094 0.85080 0.78955 0.75765 0.79948 1.18155 1.19115 1.17500 1.20334 0.77905 0.95739 1.54623 0.92510 1.83551 1.21873 1.33026 1.78113 1.24110 0.92430 0.81233 0.75495 1.90569 1.68358 1.37334 1.50545 1.22464 0.85189 1.01936 1.02636 1.22449 0.95137 0.98687 0.94616 1.23404 0.89312 1.01805 1.02388 1.24426 0.93756 1.00645 0.97098 1.20153 0.89326 0.84609 0.88832 1.93008 1.83559 1.48015 1.90185 1.93003 1.87150 1.81057 1.53631 1.22386 0.94365 0.94174 0.99450 0.90074 0.84737 0.88045 0.88096 0.83615 0.83482 0.88773 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 13.96 21.62 0.30 -55.27 15 2 C 0.02 0.95 5.49 84.87 0.47 1.42 15 3 Si 0.98 43.52 28.62 68.60 1.96 45.48 15 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.25 -10.71 7.11 99.48 0.71 -10.00 15 7 C -0.41 -25.30 10.10 67.94 0.69 -24.61 15 8 H 0.06 3.98 7.09 -2.91 -0.02 3.96 15 9 O -0.26 -13.63 8.58 14.82 0.13 -13.51 15 10 C 0.42 19.55 7.43 71.24 0.53 20.08 15 11 O -0.57 -30.65 15.14 20.78 0.31 -30.34 15 12 C -0.10 -3.27 4.25 -10.94 -0.05 -3.31 15 13 C -0.07 -1.81 7.66 31.04 0.24 -1.57 15 14 C -0.17 -3.55 3.05 -52.31 -0.16 -3.71 15 15 C -0.12 -1.75 10.50 30.45 0.32 -1.43 15 16 C 0.21 4.23 5.26 30.46 0.16 4.39 15 17 F -0.17 -3.79 17.60 44.97 0.79 -3.00 15 18 F -0.17 -3.82 17.60 44.97 0.79 -3.03 15 19 C -0.07 -1.73 7.42 30.98 0.23 -1.50 15 20 H 0.29 15.77 8.31 -92.71 -0.77 15.00 15 21 H 0.13 3.78 8.14 -2.39 -0.02 3.76 15 22 H 0.10 2.63 8.09 -2.39 -0.02 2.62 15 23 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.15 1.51 8.14 -2.39 -0.02 1.49 15 25 H 0.15 1.49 8.14 -2.39 -0.02 1.47 15 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.10 2.91 7.44 -2.39 -0.02 2.90 15 Total: -1.00 -72.51 255.62 7.91 -64.60 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.20 Total: 5.31 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 2.42 Total: -10.25 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.30 Total: -55.27 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: 0.44 Total: -43.84 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 1.58 Total: -6.04 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.96 Total: 45.48 kcal Total: -72.51 7.91 -64.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849978652.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.406 kcal (2) G-P(sol) polarization free energy of solvation -72.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds