Wall clock time and date at job start Mon Mar 30 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36962 * 125.02605 * 2 1 4 4 H 0.97001 * 125.03951 * 359.95540 * 3 2 1 5 5 C 1.37064 * 109.91554 * 179.97438 * 3 2 1 6 6 C 1.39339 * 134.65966 * 179.97438 * 5 3 2 7 7 C 1.36698 * 118.98042 * 180.02562 * 6 5 3 8 8 N 1.32304 * 121.66347 * 0.02562 * 7 6 5 9 9 C 1.31719 * 122.22353 * 359.97438 * 8 7 6 10 10 C 1.39346 * 119.98520 * 359.97438 * 9 8 7 11 11 C 1.34279 * 125.03406 * 179.97438 * 2 1 3 12 12 C 1.50709 * 126.52364 * 0.02562 * 11 2 1 13 13 H 1.08991 * 109.46773 * 165.02388 * 12 11 2 14 14 O 1.42897 * 109.46865 * 45.02275 * 12 11 2 15 15 C 1.50701 * 109.47010 * 285.02006 * 12 11 2 16 16 H 1.08001 * 119.99797 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99913 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00168 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99862 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47023 * 60.00847 * 19 17 15 21 21 H 1.48504 * 109.46808 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47129 * 300.00280 * 19 17 15 23 23 H 1.08997 * 109.46946 * 90.02604 * 1 2 3 24 24 H 1.09002 * 109.46964 * 210.02327 * 1 2 3 25 25 H 1.09001 * 109.47184 * 330.02772 * 1 2 3 26 26 H 1.08004 * 120.50706 * 0.03113 * 6 5 3 27 27 H 1.07999 * 119.17353 * 180.02562 * 7 6 5 28 28 H 1.08000 * 120.00434 * 179.97438 * 9 8 7 29 29 H 0.96697 * 114.00184 * 299.99471 * 14 12 11 30 30 H 0.96994 * 120.00281 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2931 1.1216 0.0000 4 1 1.9623 2.0335 -0.0006 5 6 3.6163 0.7643 0.0006 6 6 4.8202 1.4658 0.0004 7 6 5.9945 0.7661 0.0006 8 7 6.0147 -0.5568 0.0005 9 6 4.9112 -1.2761 0.0007 10 6 3.6687 -0.6453 0.0015 11 6 2.2778 -1.0995 0.0005 12 6 1.8011 -2.5292 0.0006 13 1 2.6280 -3.1879 -0.2645 14 8 0.7474 -2.6799 -0.9528 15 6 1.2923 -2.8889 1.3728 16 1 1.3119 -2.1555 2.1653 17 6 0.8010 -4.1540 1.6160 18 7 0.7767 -5.0469 0.6508 19 14 0.1711 -4.6002 3.3171 20 1 -0.9550 -3.7023 3.6792 21 1 -0.2988 -6.0089 3.3171 22 1 1.2667 -4.4442 4.3073 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 4.8254 2.5458 0.0002 27 1 6.9295 1.3066 0.0009 28 1 4.9695 -2.3545 0.0002 29 1 -0.0232 -2.1222 -0.7789 30 1 0.4307 -5.9367 0.8218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074212444.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:54 Heat of formation + Delta-G solvation = 11.105946 kcal Electronic energy + Delta-G solvation = -15921.893256 eV Core-core repulsion = 13296.399502 eV Total energy + Delta-G solvation = -2625.493754 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.14335 -37.82994 -35.67012 -32.18205 -31.81579 -30.97668 -29.74176 -27.52213 -26.00834 -23.04244 -22.39418 -21.51555 -18.80769 -17.64804 -16.96744 -15.95206 -15.28829 -14.62608 -14.54640 -14.44373 -13.91067 -13.73957 -12.99987 -12.91987 -12.75820 -12.05519 -11.86281 -11.81230 -11.12448 -11.05905 -10.97327 -10.81101 -10.24776 -9.42367 -9.14430 -9.07930 -8.59352 -8.33282 -8.21830 -7.12131 -6.00798 -4.19820 1.37689 1.98943 3.18484 3.28732 3.34265 3.37430 3.39130 4.35985 4.43662 4.90414 5.02713 5.21570 5.25095 5.42838 5.55401 5.65536 5.84928 5.90189 6.03448 6.18057 6.25653 6.40331 6.50920 6.56097 7.08959 7.19825 7.40714 7.72840 7.82416 7.96096 8.15743 8.52704 8.82583 9.33219 9.55936 11.01823 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.008445 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.037657 B = 3314.762513 C = 3692.243903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.051 3.949 3 N -0.589 5.589 4 H 0.408 0.592 5 C 0.122 3.878 6 C -0.190 4.190 7 C 0.088 3.912 8 N -0.516 5.516 9 C 0.169 3.831 10 C -0.151 4.151 11 C -0.124 4.124 12 C 0.289 3.711 13 H 0.067 0.933 14 O -0.562 6.562 15 C -0.561 4.561 16 H 0.056 0.944 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.072 0.928 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.148 0.852 28 H 0.159 0.841 29 H 0.343 0.657 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 11.961 -1.070 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.053 4.053 3 N -0.194 5.194 4 H 0.244 0.756 5 C 0.006 3.994 6 C -0.214 4.214 7 C -0.062 4.062 8 N -0.226 5.226 9 C 0.005 3.995 10 C -0.159 4.159 11 C -0.132 4.132 12 C 0.231 3.769 13 H 0.084 0.916 14 O -0.366 6.366 15 C -0.598 4.598 16 H 0.074 0.926 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.091 0.909 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.165 0.835 28 H 0.176 0.824 29 H 0.189 0.811 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.855 11.063 -1.393 11.510 hybrid contribution -1.606 1.216 1.336 2.417 sum 1.249 12.279 -0.057 12.342 Atomic orbital electron populations 1.20550 0.87872 1.04058 1.02615 1.20099 0.93407 0.84796 1.06991 1.41558 1.03629 1.08148 1.66021 0.75581 1.18266 0.85153 0.94523 1.01473 1.20589 0.90495 0.99889 1.10415 1.21888 0.96511 0.90235 0.97539 1.67699 1.31038 1.07525 1.16380 1.22377 0.85677 1.00062 0.91397 1.20217 0.95440 0.92451 1.07798 1.21808 0.89211 0.98132 1.04039 1.17851 0.87157 0.83502 0.88347 0.91578 1.86637 1.28239 1.67903 1.53864 1.21509 1.44392 0.97830 0.96111 0.92589 1.25042 0.94951 0.96195 0.96461 1.70056 1.43415 1.04457 1.31443 0.86733 0.79320 0.77493 0.84836 1.20202 1.21159 1.20133 0.90936 0.87865 0.92311 0.86074 0.83501 0.82409 0.81144 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 8.71 36.00 0.31 -1.08 16 2 C 0.05 0.93 7.04 -81.70 -0.58 0.35 16 3 N -0.59 -9.20 6.05 -6.91 -0.04 -9.24 16 4 H 0.41 4.74 8.96 -40.82 -0.37 4.37 16 5 C 0.12 2.13 7.35 -84.05 -0.62 1.51 16 6 C -0.19 -2.83 10.09 -39.73 -0.40 -3.23 16 7 C 0.09 1.35 11.09 -17.90 -0.20 1.16 16 8 N -0.52 -9.41 10.34 -13.27 -0.14 -9.54 16 9 C 0.17 3.30 11.28 -17.19 -0.19 3.10 16 10 C -0.15 -3.09 6.40 -105.17 -0.67 -3.76 16 11 C -0.12 -2.69 5.23 -102.77 -0.54 -3.23 16 12 C 0.29 7.27 3.09 -29.03 -0.09 7.18 16 13 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 14 O -0.56 -14.15 12.67 -35.23 -0.45 -14.60 16 15 C -0.56 -14.92 8.08 -34.44 -0.28 -15.20 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 18 N -0.86 -24.63 12.84 55.43 0.71 -23.92 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 24 H 0.10 1.75 6.10 -51.93 -0.32 1.44 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 27 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.16 2.96 8.06 -52.49 -0.42 2.54 16 29 H 0.34 7.47 5.69 45.56 0.26 7.73 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 261.79 15.07 3.95 3.95 Total: -1.00 -31.65 261.79 -6.83 -38.48 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -2.49 Total: 10.28 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -3.35 Total: -11.12 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.53 Total: -42.70 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.45 Total: -14.60 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.65 -6.83 -38.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074212444.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.586 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds