Wall clock time and date at job start Mon Mar 30 2020 03:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36962 * 125.02605 * 2 1 4 4 H 0.97001 * 125.03951 * 359.95540 * 3 2 1 5 5 C 1.37064 * 109.91554 * 179.97438 * 3 2 1 6 6 C 1.39339 * 134.65966 * 179.97438 * 5 3 2 7 7 C 1.36698 * 118.98042 * 180.02562 * 6 5 3 8 8 N 1.32304 * 121.66347 * 0.02562 * 7 6 5 9 9 C 1.31719 * 122.22353 * 359.97438 * 8 7 6 10 10 C 1.39346 * 119.98520 * 359.97438 * 9 8 7 11 11 C 1.34279 * 125.03406 * 179.97438 * 2 1 3 12 12 C 1.50709 * 126.52364 * 0.02562 * 11 2 1 13 13 H 1.08991 * 109.46773 * 165.02388 * 12 11 2 14 14 O 1.42897 * 109.46865 * 45.02275 * 12 11 2 15 15 C 1.50701 * 109.47010 * 285.02006 * 12 11 2 16 16 H 1.08001 * 119.99797 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99913 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00168 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99862 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47023 * 60.00847 * 19 17 15 21 21 H 1.48504 * 109.46808 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47129 * 300.00280 * 19 17 15 23 23 H 1.08997 * 109.46946 * 90.02604 * 1 2 3 24 24 H 1.09002 * 109.46964 * 210.02327 * 1 2 3 25 25 H 1.09001 * 109.47184 * 330.02772 * 1 2 3 26 26 H 1.08004 * 120.50706 * 0.03113 * 6 5 3 27 27 H 1.07999 * 119.17353 * 180.02562 * 7 6 5 28 28 H 1.08000 * 120.00434 * 179.97438 * 9 8 7 29 29 H 0.96697 * 114.00184 * 299.99471 * 14 12 11 30 30 H 0.96994 * 120.00281 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2931 1.1216 0.0000 4 1 1.9623 2.0335 -0.0006 5 6 3.6163 0.7643 0.0006 6 6 4.8202 1.4658 0.0004 7 6 5.9945 0.7661 0.0006 8 7 6.0147 -0.5568 0.0005 9 6 4.9112 -1.2761 0.0007 10 6 3.6687 -0.6453 0.0015 11 6 2.2778 -1.0995 0.0005 12 6 1.8011 -2.5292 0.0006 13 1 2.6280 -3.1879 -0.2645 14 8 0.7474 -2.6799 -0.9528 15 6 1.2923 -2.8889 1.3728 16 1 1.3119 -2.1555 2.1653 17 6 0.8010 -4.1540 1.6160 18 7 0.7767 -5.0469 0.6508 19 14 0.1711 -4.6002 3.3171 20 1 -0.9550 -3.7023 3.6792 21 1 -0.2988 -6.0089 3.3171 22 1 1.2667 -4.4442 4.3073 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 4.8254 2.5458 0.0002 27 1 6.9295 1.3066 0.0009 28 1 4.9695 -2.3545 0.0002 29 1 -0.0232 -2.1222 -0.7789 30 1 0.4307 -5.9367 0.8218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074212444.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:53 Heat of formation + Delta-G solvation = -12.256321 kcal Electronic energy + Delta-G solvation = -15922.906320 eV Core-core repulsion = 13296.399502 eV Total energy + Delta-G solvation = -2626.506818 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.51816 -39.21190 -37.53011 -34.25379 -33.25293 -32.33470 -31.13463 -29.17530 -27.66279 -24.81746 -23.82921 -22.87102 -20.36977 -19.03088 -18.95710 -17.31717 -16.66981 -16.64365 -16.21924 -15.89803 -15.24701 -15.15569 -14.61945 -14.55469 -14.24898 -13.53747 -13.29700 -13.07604 -12.96928 -12.93930 -12.78090 -12.25763 -12.12317 -11.24124 -10.76900 -10.58250 -10.44289 -10.25251 -9.60016 -8.58925 -8.05531 -6.34155 0.02931 0.63222 1.41354 1.44207 1.51700 1.73742 2.11526 2.43033 3.03099 3.15573 3.61984 3.76169 3.95358 4.11331 4.33218 4.34140 4.50067 4.51921 4.76777 4.81091 4.87622 4.92607 5.08652 5.22847 5.57396 5.67456 5.73402 5.87514 6.08490 6.16622 6.71254 6.75455 7.18803 7.35918 7.56786 8.94650 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.008445 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.037657 B = 3314.762513 C = 3692.243903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.077 3.923 3 N -0.570 5.570 4 H 0.432 0.568 5 C 0.116 3.884 6 C -0.171 4.171 7 C 0.080 3.920 8 N -0.527 5.527 9 C 0.139 3.861 10 C -0.182 4.182 11 C -0.182 4.182 12 C 0.298 3.702 13 H 0.021 0.979 14 O -0.579 6.579 15 C -0.563 4.563 16 H 0.053 0.947 17 C 0.028 3.972 18 N -0.898 5.898 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.276 1.276 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.169 0.831 27 H 0.190 0.810 28 H 0.141 0.859 29 H 0.357 0.643 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 15.259 -0.274 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 N -0.176 5.176 4 H 0.273 0.727 5 C 0.000 4.000 6 C -0.193 4.193 7 C -0.070 4.070 8 N -0.238 5.238 9 C -0.024 4.024 10 C -0.190 4.190 11 C -0.189 4.189 12 C 0.240 3.760 13 H 0.039 0.961 14 O -0.385 6.385 15 C -0.601 4.601 16 H 0.071 0.929 17 C -0.174 4.174 18 N -0.536 5.536 19 Si 0.780 3.220 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.201 1.201 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.187 0.813 27 H 0.206 0.794 28 H 0.159 0.841 29 H 0.204 0.796 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.478 14.409 -0.591 14.632 hybrid contribution -1.424 0.302 1.034 1.785 sum 1.054 14.711 0.443 14.755 Atomic orbital electron populations 1.20628 0.85546 1.04736 1.04146 1.20396 0.94719 0.84582 1.03243 1.41411 1.02672 1.08687 1.64866 0.72729 1.18552 0.86659 0.93350 1.01418 1.21056 0.88777 1.02122 1.07394 1.22640 0.98716 0.89244 0.96368 1.67684 1.30423 1.09363 1.16314 1.22228 0.86465 0.99844 0.93904 1.20387 0.95017 0.94575 1.09018 1.21392 0.90931 0.97205 1.09411 1.17389 0.85759 0.85515 0.87374 0.96135 1.86554 1.29089 1.68851 1.54026 1.21747 1.43761 0.97837 0.96755 0.92902 1.25861 0.95239 0.96119 1.00203 1.70195 1.44842 1.04817 1.33700 0.85675 0.78937 0.77375 0.79980 1.18672 1.20909 1.20122 0.88887 0.90215 0.88486 0.81307 0.79364 0.84109 0.79603 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.56 8.71 71.23 0.62 -1.94 16 2 C 0.08 2.68 7.04 40.85 0.29 2.97 16 3 N -0.57 -15.99 6.05 -175.78 -1.06 -17.05 16 4 H 0.43 7.98 8.96 -92.71 -0.83 7.15 16 5 C 0.12 3.81 7.35 39.28 0.29 4.09 16 6 C -0.17 -4.39 10.09 22.17 0.22 -4.17 16 7 C 0.08 2.23 11.09 84.26 0.93 3.16 16 8 N -0.53 -19.09 10.34 -195.91 -2.03 -21.12 16 9 C 0.14 5.71 11.28 84.98 0.96 6.67 16 10 C -0.18 -7.59 6.40 -20.22 -0.13 -7.72 16 11 C -0.18 -8.06 5.23 -18.66 -0.10 -8.16 16 12 C 0.30 15.78 3.09 29.10 0.09 15.87 16 13 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 14 O -0.58 -30.36 12.67 -148.98 -1.89 -32.25 16 15 C -0.56 -30.99 8.08 25.60 0.21 -30.78 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C 0.03 1.57 5.40 84.65 0.46 2.03 16 18 N -0.90 -53.53 12.84 21.45 0.28 -53.26 16 19 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H 0.09 2.20 8.01 -2.39 -0.02 2.19 16 24 H 0.08 2.63 6.10 -2.39 -0.01 2.62 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.14 5.95 8.06 -2.91 -0.02 5.92 16 29 H 0.36 15.89 5.69 -74.06 -0.42 15.47 16 30 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -71.92 261.79 1.10 -70.83 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.07 Total: 25.59 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.84 Total: -17.97 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -2.81 Total: -91.43 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.89 Total: -32.25 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.92 1.10 -70.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074212444.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.569 kcal (2) G-P(sol) polarization free energy of solvation -71.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds