Wall clock time and date at job start Mon Mar 30 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35730 * 116.99823 * 2 1 4 4 N 1.32123 * 119.87351 * 359.95068 * 3 2 1 5 5 C 1.32403 * 122.52991 * 179.97438 * 4 3 2 6 6 C 1.36373 * 121.47557 * 0.06260 * 5 4 3 7 7 C 1.40793 * 118.85199 * 359.97438 * 6 5 4 8 8 C 1.40605 * 134.24457 * 180.02562 * 7 6 5 9 9 C 1.39210 * 107.45919 * 179.97438 * 8 7 6 10 10 C 1.40001 * 125.70230 * 180.25964 * 9 8 7 11 11 H 1.07999 * 120.00457 * 179.69242 * 10 9 8 12 12 C 1.40259 * 120.00134 * 359.69867 * 10 9 8 13 13 N 1.30702 * 119.99801 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00189 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47057 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47217 * 120.00285 * 14 12 10 17 17 H 1.48500 * 109.46968 * 240.00070 * 14 12 10 18 18 N 1.38215 * 108.59607 * 0.02562 * 9 8 7 19 19 C 1.46501 * 125.59589 * 180.02562 * 18 9 8 20 20 C 1.37925 * 108.80396 * 359.97438 * 18 9 8 21 21 H 1.08996 * 109.47004 * 59.99823 * 1 2 3 22 22 H 1.08999 * 109.46758 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47200 * 300.00033 * 1 2 3 24 24 H 1.08000 * 119.26167 * 180.02562 * 5 4 3 25 25 H 1.08000 * 120.57743 * 179.97438 * 6 5 4 26 26 H 1.08000 * 126.27307 * 0.02562 * 8 7 6 27 27 H 0.96999 * 119.99827 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.46780 * 89.97655 * 19 18 9 29 29 H 1.08992 * 109.47230 * 209.97540 * 19 18 9 30 30 H 1.09002 * 109.47273 * 329.97783 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3231 2.3158 -0.0010 5 6 1.8689 3.5222 -0.0005 6 6 3.2220 3.6915 -0.0003 7 6 4.0493 2.5523 0.0000 8 6 5.4408 2.3503 0.0008 9 6 5.6634 0.9761 0.0013 10 6 6.9162 0.3514 0.0073 11 1 6.9822 -0.7266 0.0122 12 6 8.0859 1.1255 0.0071 13 7 8.0062 2.4300 0.0007 14 14 9.7576 0.2919 0.0158 15 1 9.5758 -1.1818 0.0228 16 1 10.5165 0.6919 -1.1964 17 1 10.5094 0.7032 1.2285 18 7 4.4407 0.3316 0.0004 19 6 4.2419 -1.1199 0.0011 20 6 3.4386 1.2792 -0.0002 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.2280 4.3915 -0.0010 25 1 3.6517 4.6824 -0.0003 26 1 6.1982 3.1202 0.0017 27 1 8.8150 2.9653 0.0009 28 1 4.1918 -1.4792 1.0289 29 1 3.3113 -1.3594 -0.5133 30 1 5.0747 -1.6010 -0.5119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215059624.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:32 Heat of formation + Delta-G solvation = 2.365699 kcal Electronic energy + Delta-G solvation = -15920.427553 eV Core-core repulsion = 13294.554793 eV Total energy + Delta-G solvation = -2625.872760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99534 -39.74043 -38.01221 -35.65606 -33.34888 -31.16199 -30.75767 -28.57705 -27.08038 -26.74332 -23.51564 -22.46687 -21.36001 -18.94952 -18.69852 -17.83853 -17.08555 -16.91093 -16.55117 -15.64051 -15.53337 -15.31240 -14.58689 -14.23034 -13.99130 -13.57178 -13.27443 -13.13835 -12.91292 -12.77645 -12.51011 -12.20335 -12.07507 -11.97747 -11.74742 -11.25335 -10.44487 -10.20156 -9.22489 -8.60657 -8.18025 -6.48892 0.44716 0.88778 1.42042 1.43579 1.59087 2.13444 2.20333 2.32106 2.47668 3.18730 3.39017 3.81325 4.16701 4.21004 4.45885 4.50186 4.51664 4.55552 4.67531 4.77237 4.80756 4.95735 5.06424 5.27645 5.44831 5.71207 5.81529 5.94201 6.10536 6.52901 6.65705 6.67306 6.95931 7.14955 7.31326 8.27226 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.039579 B = 0.007878 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.268072 B = 3553.467908 C = 4240.283818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.330 6.330 3 C 0.315 3.685 4 N -0.580 5.580 5 C 0.089 3.911 6 C -0.222 4.222 7 C -0.034 4.034 8 C -0.356 4.356 9 C 0.253 3.747 10 C -0.462 4.462 11 H 0.093 0.907 12 C 0.031 3.969 13 N -0.804 5.804 14 Si 1.008 2.992 15 H -0.252 1.252 16 H -0.264 1.264 17 H -0.264 1.264 18 N -0.509 5.509 19 C 0.098 3.902 20 C -0.054 4.054 21 H 0.051 0.949 22 H 0.122 0.878 23 H 0.050 0.950 24 H 0.177 0.823 25 H 0.131 0.869 26 H 0.154 0.846 27 H 0.292 0.708 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 -4.174 -0.097 5.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.239 6.239 3 C 0.132 3.868 4 N -0.308 5.308 5 C -0.058 4.058 6 C -0.244 4.244 7 C -0.044 4.044 8 C -0.379 4.379 9 C 0.144 3.856 10 C -0.495 4.495 11 H 0.111 0.889 12 C -0.187 4.187 13 N -0.429 5.429 14 Si 0.827 3.173 15 H -0.175 1.175 16 H -0.188 1.188 17 H -0.189 1.189 18 N -0.200 5.200 19 C -0.043 4.043 20 C -0.159 4.159 21 H 0.070 0.930 22 H 0.140 0.860 23 H 0.069 0.931 24 H 0.194 0.806 25 H 0.149 0.851 26 H 0.171 0.829 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.940 -4.561 -0.100 6.725 hybrid contribution 1.244 0.202 0.030 1.261 sum -3.696 -4.360 -0.070 5.716 Atomic orbital electron populations 1.22922 0.76477 1.03978 1.01791 1.86148 1.24007 1.24716 1.88980 1.18765 0.85378 0.85782 0.96921 1.67123 1.38887 0.98262 1.26516 1.21797 0.92541 0.93343 0.98153 1.21183 0.94097 0.97662 1.11475 1.18821 0.95169 0.91768 0.98641 1.21732 0.92363 0.95961 1.27891 1.18627 0.84307 0.90953 0.91690 1.19223 0.88729 0.95580 1.45960 0.88887 1.26936 1.05328 0.95156 0.91235 1.69750 1.32565 1.07263 1.33306 0.84767 0.74236 0.79318 0.79012 1.17503 1.18849 1.18896 1.44168 1.03864 1.05414 1.66544 1.21747 1.02988 0.77317 1.02254 1.18390 0.87960 0.90774 1.18777 0.93034 0.86027 0.93085 0.80576 0.85096 0.82869 0.89644 0.92189 0.90084 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.39 113.37 1.18 2.41 16 2 O -0.33 -12.95 8.90 -90.53 -0.81 -13.75 16 3 C 0.32 14.46 7.52 84.96 0.64 15.10 16 4 N -0.58 -24.95 9.19 -309.55 -2.85 -27.79 16 5 C 0.09 3.59 11.09 84.17 0.93 4.53 16 6 C -0.22 -10.03 10.14 22.46 0.23 -9.81 16 7 C -0.03 -1.79 6.21 -21.35 -0.13 -1.93 16 8 C -0.36 -20.14 9.80 23.08 0.23 -19.92 16 9 C 0.25 13.77 6.65 38.80 0.26 14.03 16 10 C -0.46 -23.41 8.96 23.19 0.21 -23.20 16 11 H 0.09 4.30 7.06 -2.91 -0.02 4.28 16 12 C 0.03 1.48 5.50 85.35 0.47 1.95 16 13 N -0.80 -40.26 10.18 21.88 0.22 -40.04 16 14 Si 1.01 35.11 29.56 68.60 2.03 37.14 16 15 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 16 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 17 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 18 N -0.51 -25.39 3.24 -529.49 -1.71 -27.10 16 19 C 0.10 3.81 10.56 127.77 1.35 5.16 16 20 C -0.05 -2.74 6.85 39.22 0.27 -2.47 16 21 H 0.05 1.47 8.11 -2.39 -0.02 1.45 16 22 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 24 H 0.18 5.47 8.06 -2.91 -0.02 5.45 16 25 H 0.13 5.28 8.06 -2.91 -0.02 5.25 16 26 H 0.15 8.97 5.59 -2.91 -0.02 8.96 16 27 H 0.29 12.99 8.29 -92.71 -0.77 12.22 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 2.91 6.87 -2.39 -0.02 2.90 16 30 H 0.08 2.96 7.27 -2.39 -0.02 2.94 16 Total: -1.00 -63.85 259.78 3.67 -60.18 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.16 Total: 25.52 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 5.63 Total: -14.15 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.34 Total: -94.94 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.81 Total: -13.75 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -63.85 3.67 -60.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215059624.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.548 kcal (2) G-P(sol) polarization free energy of solvation -63.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds