Wall clock time and date at job start Mon Mar 30 2020 03:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35705 * 117.00263 * 2 1 4 4 C 1.40204 * 120.14736 * 270.24770 * 3 2 1 5 5 C 1.43199 * 120.19126 * 359.97438 * 4 3 2 6 6 N 3.53347 * 95.62343 * 281.65744 * 2 1 3 7 7 C 1.39677 * 119.61783 * 180.22619 * 4 3 2 8 8 C 1.37860 * 119.89959 * 359.77152 * 7 4 3 9 9 C 1.38471 * 120.29757 * 359.97438 * 8 7 4 10 10 C 1.38153 * 120.38985 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.95241 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47145 * 219.99460 * 11 10 9 13 13 N 1.46900 * 109.47047 * 339.99684 * 11 10 9 14 14 C 1.50700 * 109.47148 * 99.99439 * 11 10 9 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46986 * 270.00126 * 18 16 14 20 20 H 1.48496 * 109.47029 * 30.00143 * 18 16 14 21 21 H 1.48499 * 109.47352 * 149.99973 * 18 16 14 22 22 H 1.09000 * 109.46574 * 60.00504 * 1 2 3 23 23 H 1.08998 * 109.46684 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47282 * 300.00614 * 1 2 3 25 25 H 1.08005 * 120.04658 * 179.74870 * 7 4 3 26 26 H 1.08004 * 119.85152 * 179.97438 * 8 7 4 27 27 H 1.08000 * 119.80475 * 179.97438 * 9 8 7 28 28 H 1.00907 * 110.99867 * 296.04432 * 13 11 10 29 29 H 1.00896 * 111.00376 * 59.99771 * 13 11 10 30 30 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3602 1.8389 -1.2124 5 6 2.0341 1.2097 -2.4567 6 7 1.7752 0.7105 -3.4439 7 6 2.9986 3.0811 -1.1995 8 6 3.3102 3.6812 0.0019 9 6 2.9925 3.0582 1.1971 10 6 2.3601 1.8300 1.1985 11 6 2.0184 1.1611 2.5050 12 1 2.2101 0.0910 2.4264 13 7 2.8462 1.7294 3.5772 14 6 0.5624 1.3887 2.8202 15 1 -0.0539 1.9603 2.1421 16 6 0.0170 0.8666 3.9738 17 7 0.7675 0.1702 4.7993 18 14 -1.7879 1.1481 4.3642 19 1 -1.9343 2.3961 5.1557 20 1 -2.5547 1.2718 3.0986 21 1 -2.3096 0.0003 5.1488 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.2482 3.5706 -2.1294 26 1 3.8042 4.6416 0.0109 27 1 3.2407 3.5354 2.1336 28 1 3.8238 1.5335 3.4218 29 1 2.6866 2.7213 3.6702 30 1 1.7047 0.0237 4.5964 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238344492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:08 Heat of formation + Delta-G solvation = 19.132778 kcal Electronic energy + Delta-G solvation = -15980.382003 eV Core-core repulsion = 13355.236319 eV Total energy + Delta-G solvation = -2625.145685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.95660 -36.95137 -36.41917 -34.93233 -31.78626 -30.35130 -29.50479 -26.72468 -25.64760 -23.56012 -22.42904 -20.89807 -18.22549 -17.21412 -16.75325 -16.05589 -15.28062 -14.82466 -14.50128 -14.00959 -13.62139 -13.54604 -13.39287 -13.16806 -12.72959 -12.34980 -12.17010 -11.80598 -11.60256 -11.17226 -11.07003 -10.75560 -10.25258 -10.09039 -9.50586 -9.09473 -8.53786 -8.43738 -8.04212 -7.63932 -6.26986 -4.11400 0.95440 1.53687 2.85238 3.17582 3.41520 3.42499 3.57993 3.83424 4.09486 4.36937 4.52270 5.04713 5.22148 5.32103 5.49078 5.65189 5.71081 5.76419 5.93464 6.02655 6.13825 6.39851 6.48739 6.59814 6.63722 6.92522 7.13932 7.65648 7.84505 7.92616 8.16231 8.52094 8.64333 8.94086 9.71611 11.12602 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.009276 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.145583 B = 3017.739048 C = 3576.546645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.331 6.331 3 C 0.151 3.849 4 C -0.064 4.064 5 C 0.271 3.729 6 N -0.435 5.435 7 C -0.084 4.084 8 C -0.127 4.127 9 C -0.093 4.093 10 C -0.087 4.087 11 C 0.240 3.760 12 H 0.052 0.948 13 N -0.830 5.830 14 C -0.607 4.607 15 H 0.047 0.953 16 C 0.042 3.958 17 N -0.885 5.885 18 Si 1.061 2.939 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.285 1.285 22 H 0.027 0.973 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.305 0.695 29 H 0.327 0.673 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 6.163 -6.773 9.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.248 6.248 3 C 0.104 3.896 4 C -0.068 4.068 5 C -0.044 4.044 6 N -0.110 5.110 7 C -0.104 4.104 8 C -0.145 4.145 9 C -0.112 4.112 10 C -0.090 4.090 11 C 0.131 3.869 12 H 0.070 0.930 13 N -0.359 5.359 14 C -0.645 4.645 15 H 0.066 0.934 16 C -0.169 4.169 17 N -0.518 5.518 18 Si 0.890 3.110 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.210 1.210 22 H 0.046 0.954 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.116 0.884 29 H 0.141 0.859 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.462 4.364 -6.674 8.107 hybrid contribution 1.564 1.379 -1.614 2.637 sum 3.026 5.743 -8.288 10.527 Atomic orbital electron populations 1.23306 0.77659 1.03321 1.02208 1.85824 1.20856 1.23930 1.94171 1.18539 0.95189 0.85819 0.90052 1.16509 1.07859 0.95951 0.86503 1.25587 0.93207 0.92979 0.92593 1.81152 1.09465 1.08715 1.11697 1.20840 0.98086 0.92753 0.98751 1.20970 1.01465 1.00266 0.91831 1.21183 0.97126 0.94531 0.98332 1.21900 0.94507 0.94299 0.98283 1.18343 0.94283 0.94200 0.80061 0.93045 1.59405 1.08034 1.18662 1.49759 1.21563 0.92021 1.40626 1.10330 0.93439 1.25561 1.05356 0.93357 0.92650 1.70513 1.10558 1.34006 1.36711 0.83678 0.74980 0.76610 0.75716 1.21522 1.21670 1.21026 0.95405 0.89521 0.88974 0.85454 0.85430 0.85425 0.88425 0.85946 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.03 101.05 1.11 1.64 16 2 O -0.33 -6.71 9.08 -18.82 -0.17 -6.89 16 3 C 0.15 2.86 5.69 -38.71 -0.22 2.64 16 4 C -0.06 -1.05 5.75 -106.70 -0.61 -1.67 16 5 C 0.27 4.64 14.87 -22.47 -0.33 4.31 16 6 N -0.43 -7.91 18.54 41.84 0.78 -7.13 16 7 C -0.08 -1.12 9.75 -39.18 -0.38 -1.50 16 8 C -0.13 -1.64 10.02 -39.63 -0.40 -2.04 16 9 C -0.09 -1.44 9.24 -39.53 -0.37 -1.81 16 10 C -0.09 -1.65 5.02 -104.52 -0.52 -2.18 16 11 C 0.24 5.38 2.13 -70.01 -0.15 5.23 16 12 H 0.05 1.32 7.71 -51.93 -0.40 0.92 16 13 N -0.83 -17.09 7.27 -6.65 -0.05 -17.13 16 14 C -0.61 -15.12 6.72 -34.44 -0.23 -15.35 16 15 H 0.05 1.19 6.89 -52.49 -0.36 0.83 16 16 C 0.04 1.10 5.39 -17.82 -0.10 1.00 16 17 N -0.88 -25.14 13.51 55.43 0.75 -24.39 16 18 Si 1.06 23.66 29.90 -169.99 -5.08 18.58 16 19 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.09 1.89 5.04 -51.93 -0.26 1.63 16 25 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 26 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 27 H 0.13 1.82 6.22 -52.49 -0.33 1.49 16 28 H 0.30 5.48 9.06 -39.29 -0.36 5.13 16 29 H 0.33 6.32 7.27 -39.29 -0.29 6.04 16 30 H 0.29 8.32 6.39 -40.82 -0.26 8.06 16 LS Contribution 266.21 15.07 4.01 4.01 Total: -1.00 -28.77 266.21 -4.71 -33.47 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -2.74 Total: 9.19 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.20 Total: -9.71 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 1.48 Total: -48.66 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.17 Total: -6.89 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.08 Total: 18.58 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.77 -4.71 -33.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238344492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.605 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds