Wall clock time and date at job start Mon Mar 30 2020 03:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35705 * 117.00263 * 2 1 4 4 C 1.40204 * 120.14736 * 270.24770 * 3 2 1 5 5 C 1.43199 * 120.19126 * 359.97438 * 4 3 2 6 6 N 3.53347 * 95.62343 * 281.65744 * 2 1 3 7 7 C 1.39677 * 119.61783 * 180.22619 * 4 3 2 8 8 C 1.37860 * 119.89959 * 359.77152 * 7 4 3 9 9 C 1.38471 * 120.29757 * 359.97438 * 8 7 4 10 10 C 1.38153 * 120.38985 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.95241 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47145 * 219.99460 * 11 10 9 13 13 N 1.46900 * 109.47047 * 339.99684 * 11 10 9 14 14 C 1.50700 * 109.47148 * 99.99439 * 11 10 9 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46986 * 270.00126 * 18 16 14 20 20 H 1.48496 * 109.47029 * 30.00143 * 18 16 14 21 21 H 1.48499 * 109.47352 * 149.99973 * 18 16 14 22 22 H 1.09000 * 109.46574 * 60.00504 * 1 2 3 23 23 H 1.08998 * 109.46684 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47282 * 300.00614 * 1 2 3 25 25 H 1.08005 * 120.04658 * 179.74870 * 7 4 3 26 26 H 1.08004 * 119.85152 * 179.97438 * 8 7 4 27 27 H 1.08000 * 119.80475 * 179.97438 * 9 8 7 28 28 H 1.00907 * 110.99867 * 296.04432 * 13 11 10 29 29 H 1.00896 * 111.00376 * 59.99771 * 13 11 10 30 30 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3602 1.8389 -1.2124 5 6 2.0341 1.2097 -2.4567 6 7 1.7752 0.7105 -3.4439 7 6 2.9986 3.0811 -1.1995 8 6 3.3102 3.6812 0.0019 9 6 2.9925 3.0582 1.1971 10 6 2.3601 1.8300 1.1985 11 6 2.0184 1.1611 2.5050 12 1 2.2101 0.0910 2.4264 13 7 2.8462 1.7294 3.5772 14 6 0.5624 1.3887 2.8202 15 1 -0.0539 1.9603 2.1421 16 6 0.0170 0.8666 3.9738 17 7 0.7675 0.1702 4.7993 18 14 -1.7879 1.1481 4.3642 19 1 -1.9343 2.3961 5.1557 20 1 -2.5547 1.2718 3.0986 21 1 -2.3096 0.0003 5.1488 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.2482 3.5706 -2.1294 26 1 3.8042 4.6416 0.0109 27 1 3.2407 3.5354 2.1336 28 1 3.8238 1.5335 3.4218 29 1 2.6866 2.7213 3.6702 30 1 1.7047 0.0237 4.5964 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238344492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:08 Heat of formation + Delta-G solvation = -0.191965 kcal Electronic energy + Delta-G solvation = -15981.219987 eV Core-core repulsion = 13355.236319 eV Total energy + Delta-G solvation = -2625.983668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30898 -38.34029 -37.84165 -36.54619 -33.59064 -31.64866 -30.94667 -28.33238 -27.26498 -25.07417 -23.92175 -22.34919 -19.66008 -18.81661 -18.33077 -17.45502 -16.74974 -16.29319 -15.96071 -15.63728 -15.26130 -14.93153 -14.78369 -14.60440 -14.10380 -13.95264 -13.68349 -13.17320 -13.03799 -12.75059 -12.48734 -12.42748 -11.95744 -11.77056 -11.00041 -10.81483 -10.42766 -9.82691 -9.50205 -9.27234 -8.30286 -6.15698 -0.31154 0.30172 1.51273 1.59337 1.65830 1.81567 1.87774 2.53286 2.66685 2.80751 3.06140 3.37947 3.89559 4.07104 4.21188 4.27636 4.40236 4.44521 4.46287 4.57861 4.85066 4.93726 5.14411 5.24336 5.34545 5.56200 5.73162 5.98570 6.29298 6.33125 6.50611 6.73971 6.84922 7.10920 7.73427 9.05631 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.009276 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.145583 B = 3017.739048 C = 3576.546645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.125 3.875 4 C -0.072 4.072 5 C 0.283 3.717 6 N -0.458 5.458 7 C -0.062 4.062 8 C -0.108 4.108 9 C -0.088 4.088 10 C -0.117 4.117 11 C 0.248 3.752 12 H 0.007 0.993 13 N -0.838 5.838 14 C -0.597 4.597 15 H 0.042 0.958 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 1.101 2.899 19 H -0.279 1.279 20 H -0.273 1.273 21 H -0.292 1.292 22 H 0.041 0.959 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.167 0.833 26 H 0.176 0.824 27 H 0.141 0.859 28 H 0.320 0.680 29 H 0.335 0.665 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 8.716 -8.135 12.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.078 3.922 4 C -0.076 4.076 5 C -0.031 4.031 6 N -0.134 5.134 7 C -0.082 4.082 8 C -0.125 4.125 9 C -0.107 4.107 10 C -0.119 4.119 11 C 0.138 3.862 12 H 0.024 0.976 13 N -0.368 5.368 14 C -0.635 4.635 15 H 0.060 0.940 16 C -0.211 4.211 17 N -0.557 5.557 18 Si 0.925 3.075 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.218 1.218 22 H 0.059 0.941 23 H 0.117 0.883 24 H 0.086 0.914 25 H 0.185 0.815 26 H 0.194 0.806 27 H 0.158 0.842 28 H 0.133 0.867 29 H 0.150 0.850 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.055 6.936 -8.056 10.828 hybrid contribution 1.477 0.654 -1.279 2.060 sum 3.532 7.590 -9.335 12.539 Atomic orbital electron populations 1.23253 0.77442 1.03978 1.01504 1.85794 1.21412 1.25520 1.94353 1.18749 0.96342 0.85935 0.91137 1.16599 1.08838 0.97132 0.85042 1.25688 0.92545 0.92450 0.92446 1.81163 1.10347 1.09284 1.12633 1.21361 0.95146 0.90897 1.00784 1.21439 0.99626 1.01369 0.90101 1.21413 0.95883 0.93024 1.00374 1.21572 0.97677 0.96175 0.96524 1.17869 0.93369 0.92337 0.82587 0.97567 1.59128 1.08910 1.19164 1.49583 1.21792 0.93621 1.38834 1.09276 0.93954 1.26727 1.08278 0.92989 0.93084 1.70627 1.10190 1.36737 1.38129 0.83148 0.71553 0.76503 0.76254 1.20451 1.19810 1.21782 0.94087 0.88319 0.91422 0.81513 0.80632 0.84172 0.86739 0.85008 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 11.03 113.37 1.25 2.44 16 2 O -0.35 -14.68 9.08 -90.25 -0.82 -15.49 16 3 C 0.13 4.69 5.69 22.83 0.13 4.82 16 4 C -0.07 -2.20 5.75 -21.21 -0.12 -2.32 16 5 C 0.28 9.20 14.87 88.33 1.31 10.51 16 6 N -0.46 -16.06 18.54 19.01 0.35 -15.71 16 7 C -0.06 -1.35 9.75 22.53 0.22 -1.14 16 8 C -0.11 -2.21 10.02 22.24 0.22 -1.98 16 9 C -0.09 -2.48 9.24 22.31 0.21 -2.27 16 10 C -0.12 -4.37 5.02 -19.80 -0.10 -4.47 16 11 C 0.25 11.38 2.13 43.42 0.09 11.47 16 12 H 0.01 0.35 7.71 -2.39 -0.02 0.34 16 13 N -0.84 -34.72 7.27 -174.95 -1.27 -35.99 16 14 C -0.60 -30.26 6.72 25.60 0.17 -30.09 16 15 H 0.04 2.15 6.89 -2.91 -0.02 2.13 16 16 C -0.01 -0.35 5.39 84.65 0.46 0.11 16 17 N -0.92 -53.96 13.51 21.45 0.29 -53.67 16 18 Si 1.10 48.09 29.90 68.60 2.05 50.14 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.10 3.33 8.14 -2.39 -0.02 3.32 16 24 H 0.07 2.85 5.04 -2.39 -0.01 2.84 16 25 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 26 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.14 3.55 6.22 -2.91 -0.02 3.53 16 28 H 0.32 11.52 9.06 -89.69 -0.81 10.71 16 29 H 0.34 12.73 7.27 -89.70 -0.65 12.08 16 30 H 0.28 16.59 6.39 -92.70 -0.59 15.99 16 Total: -1.00 -64.75 266.21 4.35 -60.40 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.09 Total: 23.24 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 3.84 Total: -12.92 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -0.63 Total: -105.37 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.82 Total: -15.49 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.05 Total: 50.14 kcal Total: -64.75 4.35 -60.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238344492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.207 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds