Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35916 * 116.99601 * 2 1 4 4 C 1.38856 * 119.98176 * 359.97438 * 3 2 1 5 5 C 1.38252 * 120.24784 * 179.70266 * 4 3 2 6 6 C 1.37994 * 120.21240 * 0.59544 * 5 4 3 7 7 C 1.50701 * 120.02003 * 179.69819 * 6 5 4 8 8 H 1.09002 * 109.47060 * 144.72865 * 7 6 5 9 9 N 1.46901 * 109.46921 * 24.72684 * 7 6 5 10 10 C 1.50699 * 109.47269 * 264.72719 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47438 * 0.02562 * 14 12 10 16 16 H 1.48491 * 109.47045 * 120.00577 * 14 12 10 17 17 H 1.48501 * 109.46950 * 240.00369 * 14 12 10 18 18 C 1.39620 * 119.95934 * 359.42863 * 6 5 4 19 19 C 1.43200 * 120.12528 * 180.29480 * 18 6 5 20 20 N 5.84235 * 152.72177 * 0.02562 * 2 1 3 21 21 C 1.38444 * 119.98103 * 180.02562 * 3 2 1 22 22 H 1.08996 * 109.47015 * 60.00505 * 1 2 3 23 23 H 1.09002 * 109.46591 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47293 * 300.00035 * 1 2 3 25 25 H 1.07999 * 119.87349 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.89173 * 180.31968 * 5 4 3 27 27 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 28 28 H 1.00904 * 111.00313 * 63.95601 * 9 7 6 29 29 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 30 30 H 1.08001 * 120.10150 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9111 3.6101 0.0057 6 6 3.2885 3.6940 0.0000 7 6 3.9617 5.0422 -0.0001 8 1 4.8772 4.9912 0.5894 9 7 3.0574 6.0411 0.5851 10 6 4.2970 5.4362 -1.4155 11 1 4.0471 4.7765 -2.2332 12 6 4.9218 6.6394 -1.6665 13 7 5.2256 7.4430 -0.6707 14 14 5.3367 7.1281 -3.4211 15 1 4.8931 6.0586 -4.3509 16 1 4.6425 8.3965 -3.7590 17 1 6.8041 7.3179 -3.5482 18 6 4.0579 2.5289 0.0001 19 6 5.4875 2.6119 0.0006 20 7 6.6216 2.6776 0.0012 21 6 3.4285 1.2832 -0.0005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2109 2.3160 -0.0005 26 1 1.3169 4.5119 0.0104 27 1 2.2008 6.1073 0.0562 28 1 2.8687 5.8342 1.5546 29 1 5.6655 8.2893 -0.8473 30 1 4.0181 0.3783 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238347963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = 22.426343 kcal Electronic energy + Delta-G solvation = -15522.337980 eV Core-core repulsion = 12897.335115 eV Total energy + Delta-G solvation = -2625.002865 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02879 -37.93712 -35.60925 -34.31584 -31.69941 -30.97094 -29.33733 -27.18636 -25.96775 -23.29906 -23.00585 -20.25308 -18.93004 -16.55467 -16.32965 -16.14138 -15.67489 -15.23581 -14.39510 -14.20361 -13.98207 -13.43227 -13.31408 -12.82759 -12.38096 -12.17941 -12.11187 -11.90061 -11.79052 -11.31402 -10.92953 -10.80226 -10.63034 -10.52123 -9.85868 -9.28070 -8.68669 -8.47686 -7.72623 -7.20943 -5.92012 -4.08224 1.15125 1.75766 3.17965 3.32041 3.40188 3.42622 3.46474 3.49798 4.32611 4.48728 4.57246 4.92596 5.09732 5.10489 5.17416 5.31930 5.38661 5.54000 5.67409 5.85987 6.12354 6.17899 6.45409 6.64863 6.76420 6.92569 7.34510 7.50823 7.85663 8.07594 8.16895 8.52914 8.90427 9.06611 9.61450 11.12157 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029717 B = 0.007495 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.998734 B = 3734.737592 C = 4009.476570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.095 4.095 6 C -0.056 4.056 7 C 0.252 3.748 8 H 0.051 0.949 9 N -0.809 5.809 10 C -0.533 4.533 11 H 0.056 0.944 12 C 0.086 3.914 13 N -0.844 5.844 14 Si 0.884 3.116 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.005 3.995 19 C 0.271 3.729 20 N -0.421 5.421 21 C -0.105 4.105 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.319 0.681 28 H 0.301 0.699 29 H 0.256 0.744 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -11.073 2.312 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.051 3.949 4 C -0.194 4.194 5 C -0.113 4.113 6 C -0.061 4.061 7 C 0.142 3.858 8 H 0.068 0.932 9 N -0.336 5.336 10 C -0.571 4.571 11 H 0.074 0.926 12 C -0.121 4.121 13 N -0.478 5.478 14 Si 0.711 3.289 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 C 0.001 3.999 19 C -0.044 4.044 20 N -0.096 5.096 21 C -0.126 4.126 22 H 0.072 0.928 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.765 -10.422 2.217 13.797 hybrid contribution -1.201 -0.329 -0.923 1.551 sum -9.966 -10.751 1.294 14.717 Atomic orbital electron populations 1.22991 0.78818 1.03488 1.01293 1.86030 1.20974 1.26900 1.89604 1.18540 0.91673 0.84119 1.00581 1.21350 0.99747 0.92362 1.05985 1.20749 0.94039 0.96963 0.99560 1.21928 0.93605 0.98384 0.92214 1.18281 0.91158 0.79620 0.96758 0.93162 1.59110 1.18245 1.53140 1.03058 1.20774 1.41495 1.04492 0.90359 0.92610 1.24925 0.94581 0.96257 0.96371 1.70102 1.37903 1.09650 1.30112 0.86686 0.78142 0.78522 0.85514 1.19774 1.20897 1.21015 1.15586 0.84892 0.93204 1.06209 1.25289 0.92368 0.93052 0.93722 1.81110 1.12243 1.07793 1.08464 1.20206 0.91597 0.96860 1.03977 0.92753 0.88626 0.92808 0.85584 0.85139 0.86712 0.88852 0.93364 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.11 10.49 -19.48 -0.20 -4.31 16 3 C 0.10 1.37 6.68 -39.28 -0.26 1.11 16 4 C -0.17 -2.40 9.03 -39.35 -0.36 -2.75 16 5 C -0.09 -1.52 9.25 -39.67 -0.37 -1.89 16 6 C -0.06 -1.09 5.02 -104.20 -0.52 -1.61 16 7 C 0.25 5.96 2.36 -70.02 -0.17 5.80 16 8 H 0.05 1.37 7.27 -51.93 -0.38 0.99 16 9 N -0.81 -17.72 8.13 -6.65 -0.05 -17.78 16 10 C -0.53 -14.28 8.71 -34.44 -0.30 -14.58 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.09 2.39 5.39 -17.82 -0.10 2.30 16 13 N -0.84 -24.47 12.77 55.43 0.71 -23.77 16 14 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 C 0.01 0.09 5.73 -106.96 -0.61 -0.52 16 19 C 0.27 5.64 13.88 -22.47 -0.31 5.33 16 20 N -0.42 -9.45 18.54 41.84 0.78 -8.67 16 21 C -0.11 -1.65 9.69 -39.01 -0.38 -2.03 16 22 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.13 1.33 6.28 -52.49 -0.33 1.00 16 26 H 0.13 1.93 6.27 -52.49 -0.33 1.60 16 27 H 0.32 6.45 7.20 -39.29 -0.28 6.16 16 28 H 0.30 5.79 9.06 -39.29 -0.36 5.43 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 269.99 15.07 4.07 4.07 Total: -1.00 -31.06 269.99 -4.97 -36.02 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -2.86 Total: 5.57 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.38 Total: -7.61 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 1.43 Total: -50.22 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.06 -4.97 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238347963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.449 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds