Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35916 * 116.99601 * 2 1 4 4 C 1.38856 * 119.98176 * 359.97438 * 3 2 1 5 5 C 1.38252 * 120.24784 * 179.70266 * 4 3 2 6 6 C 1.37994 * 120.21240 * 0.59544 * 5 4 3 7 7 C 1.50701 * 120.02003 * 179.69819 * 6 5 4 8 8 H 1.09002 * 109.47060 * 144.72865 * 7 6 5 9 9 N 1.46901 * 109.46921 * 24.72684 * 7 6 5 10 10 C 1.50699 * 109.47269 * 264.72719 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47438 * 0.02562 * 14 12 10 16 16 H 1.48491 * 109.47045 * 120.00577 * 14 12 10 17 17 H 1.48501 * 109.46950 * 240.00369 * 14 12 10 18 18 C 1.39620 * 119.95934 * 359.42863 * 6 5 4 19 19 C 1.43200 * 120.12528 * 180.29480 * 18 6 5 20 20 N 5.84235 * 152.72177 * 0.02562 * 2 1 3 21 21 C 1.38444 * 119.98103 * 180.02562 * 3 2 1 22 22 H 1.08996 * 109.47015 * 60.00505 * 1 2 3 23 23 H 1.09002 * 109.46591 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47293 * 300.00035 * 1 2 3 25 25 H 1.07999 * 119.87349 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.89173 * 180.31968 * 5 4 3 27 27 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 28 28 H 1.00904 * 111.00313 * 63.95601 * 9 7 6 29 29 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 30 30 H 1.08001 * 120.10150 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9111 3.6101 0.0057 6 6 3.2885 3.6940 0.0000 7 6 3.9617 5.0422 -0.0001 8 1 4.8772 4.9912 0.5894 9 7 3.0574 6.0411 0.5851 10 6 4.2970 5.4362 -1.4155 11 1 4.0471 4.7765 -2.2332 12 6 4.9218 6.6394 -1.6665 13 7 5.2256 7.4430 -0.6707 14 14 5.3367 7.1281 -3.4211 15 1 4.8931 6.0586 -4.3509 16 1 4.6425 8.3965 -3.7590 17 1 6.8041 7.3179 -3.5482 18 6 4.0579 2.5289 0.0001 19 6 5.4875 2.6119 0.0006 20 7 6.6216 2.6776 0.0012 21 6 3.4285 1.2832 -0.0005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2109 2.3160 -0.0005 26 1 1.3169 4.5119 0.0104 27 1 2.2008 6.1073 0.0562 28 1 2.8687 5.8342 1.5546 29 1 5.6655 8.2893 -0.8473 30 1 4.0181 0.3783 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238347963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = 0.557504 kcal Electronic energy + Delta-G solvation = -15523.286284 eV Core-core repulsion = 12897.335115 eV Total energy + Delta-G solvation = -2625.951169 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.21125 -39.17443 -37.24576 -35.98969 -33.61596 -32.29232 -30.64138 -28.29608 -27.68133 -24.61222 -24.57106 -21.82208 -20.11068 -18.56037 -17.51559 -17.34989 -16.89471 -16.55244 -16.14299 -15.87999 -15.25150 -14.90835 -14.72009 -14.27420 -14.16034 -13.65715 -13.48946 -13.35471 -13.06536 -12.88514 -12.71765 -12.51013 -11.96030 -11.76735 -11.70976 -11.16499 -10.58575 -9.96239 -9.09493 -8.85230 -8.00603 -6.22127 -0.16834 0.48240 1.38159 1.41318 1.50571 1.71096 2.00697 2.35344 2.43542 2.95151 3.16279 3.23448 3.84696 4.08651 4.14064 4.30305 4.45255 4.54021 4.59001 4.60402 4.83461 4.93217 5.19821 5.21512 5.35814 5.61418 5.67282 5.74106 6.13520 6.48144 6.54737 6.64767 7.11791 7.29350 7.50707 9.02211 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029717 B = 0.007495 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.998734 B = 3734.737592 C = 4009.476570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.109 3.891 4 C -0.156 4.156 5 C -0.091 4.091 6 C -0.081 4.081 7 C 0.260 3.740 8 H 0.004 0.996 9 N -0.820 5.820 10 C -0.538 4.538 11 H 0.048 0.952 12 C 0.036 3.964 13 N -0.878 5.878 14 Si 0.940 3.060 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.290 1.290 18 C -0.014 4.014 19 C 0.282 3.718 20 N -0.466 5.466 21 C -0.103 4.103 22 H 0.066 0.934 23 H 0.120 0.880 24 H 0.069 0.931 25 H 0.168 0.832 26 H 0.144 0.856 27 H 0.331 0.669 28 H 0.317 0.683 29 H 0.255 0.745 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.199 -12.590 1.834 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.064 3.936 4 C -0.175 4.175 5 C -0.109 4.109 6 C -0.087 4.087 7 C 0.150 3.850 8 H 0.021 0.979 9 N -0.349 5.349 10 C -0.576 4.576 11 H 0.066 0.934 12 C -0.167 4.167 13 N -0.514 5.514 14 Si 0.766 3.234 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.216 1.216 18 C -0.018 4.018 19 C -0.033 4.033 20 N -0.142 5.142 21 C -0.125 4.125 22 H 0.084 0.916 23 H 0.138 0.862 24 H 0.088 0.912 25 H 0.185 0.815 26 H 0.162 0.838 27 H 0.145 0.855 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.709 -11.959 1.734 16.826 hybrid contribution -0.456 -0.021 -0.732 0.862 sum -12.164 -11.980 1.003 17.103 Atomic orbital electron populations 1.23404 0.76159 1.05731 1.02586 1.86050 1.23632 1.25715 1.88984 1.18595 0.91257 0.85232 0.98555 1.21690 1.01726 0.90789 1.03276 1.20857 0.92435 0.98713 0.98884 1.21480 0.95118 0.96273 0.95787 1.17788 0.90407 0.82513 0.94331 0.97859 1.58833 1.18615 1.53272 1.04174 1.21098 1.40617 1.03973 0.91940 0.93367 1.25631 0.94863 0.96628 0.99621 1.70221 1.39356 1.10038 1.31828 0.85810 0.77431 0.78491 0.81686 1.19248 1.19967 1.21611 1.15671 0.83506 0.94397 1.08252 1.25862 0.93082 0.91821 0.92485 1.81082 1.13561 1.09183 1.10382 1.20308 0.92767 0.96058 1.03326 0.91555 0.86227 0.91245 0.81454 0.83848 0.85495 0.87164 0.93628 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.01 10.49 -92.60 -0.97 -7.98 16 3 C 0.11 2.74 6.68 22.47 0.15 2.89 16 4 C -0.16 -3.60 9.03 22.42 0.20 -3.39 16 5 C -0.09 -2.68 9.25 22.22 0.21 -2.48 16 6 C -0.08 -3.13 5.02 -19.59 -0.10 -3.22 16 7 C 0.26 12.58 2.36 43.42 0.10 12.68 16 8 H 0.00 0.21 7.27 -2.39 -0.02 0.19 16 9 N -0.82 -36.05 8.13 -174.95 -1.42 -37.47 16 10 C -0.54 -29.30 8.71 25.60 0.22 -29.08 16 11 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 12 C 0.04 2.05 5.39 84.65 0.46 2.51 16 13 N -0.88 -52.21 12.77 21.45 0.27 -51.94 16 14 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 18 C -0.01 -0.53 5.73 -21.38 -0.12 -0.65 16 19 C 0.28 12.13 13.88 88.33 1.23 13.36 16 20 N -0.47 -21.85 18.54 19.00 0.35 -21.50 16 21 C -0.10 -3.06 9.69 22.64 0.22 -2.84 16 22 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 23 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 25 H 0.17 2.50 6.28 -2.91 -0.02 2.48 16 26 H 0.14 3.83 6.27 -2.91 -0.02 3.81 16 27 H 0.33 13.07 7.20 -89.70 -0.65 12.43 16 28 H 0.32 12.15 9.06 -89.69 -0.81 11.33 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -69.03 269.99 3.67 -65.36 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.26 Total: 15.76 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 3.68 Total: -8.94 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -0.80 Total: -110.91 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.97 Total: -7.98 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.03 3.67 -65.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238347963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.918 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds