Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00296 * 2 1 4 4 C 1.38865 * 119.98239 * 359.97438 * 3 2 1 5 5 C 1.38240 * 120.25122 * 180.02562 * 4 3 2 6 6 C 1.38001 * 120.21578 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.02214 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46843 * 219.99459 * 7 6 5 9 9 N 1.46903 * 109.46733 * 339.99499 * 7 6 5 10 10 C 1.50692 * 109.47211 * 99.99347 * 7 6 5 11 11 H 1.08005 * 120.00422 * 356.30608 * 10 7 6 12 12 C 1.37882 * 120.00008 * 176.30255 * 10 7 6 13 13 N 1.31520 * 119.99795 * 353.15388 * 12 10 7 14 14 Si 1.86792 * 120.00084 * 173.15375 * 12 10 7 15 15 H 1.48504 * 109.47257 * 265.18766 * 14 12 10 16 16 H 1.48501 * 109.47717 * 25.18556 * 14 12 10 17 17 H 1.48497 * 109.47308 * 145.18888 * 14 12 10 18 18 C 1.39625 * 119.95538 * 0.26943 * 6 5 4 19 19 C 1.43196 * 120.12302 * 179.75427 * 18 6 5 20 20 N 5.84233 * 152.72641 * 359.66613 * 2 1 3 21 21 C 1.38450 * 119.98347 * 180.02562 * 3 2 1 22 22 H 1.08996 * 109.47177 * 300.00619 * 1 2 3 23 23 H 1.08998 * 109.46455 * 60.00614 * 1 2 3 24 24 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.87009 * 0.03453 * 4 3 2 26 26 H 1.08007 * 119.89264 * 180.02562 * 5 4 3 27 27 H 1.00892 * 111.00392 * 66.76576 * 9 7 6 28 28 H 1.00903 * 110.99507 * 190.72080 * 9 7 6 29 29 H 0.96995 * 119.99728 * 179.97438 * 13 12 10 30 30 H 1.07998 * 120.10470 * 359.94942 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3753 -0.0005 5 6 1.9113 3.6099 -0.0011 6 6 3.2888 3.6937 -0.0016 7 6 3.9622 5.0420 -0.0028 8 1 4.8286 5.0147 -0.6636 9 7 3.0164 6.0612 -0.4770 10 6 4.4077 5.3822 1.3960 11 1 4.1695 4.7194 2.2149 12 6 5.1195 6.5395 1.6305 13 7 5.5262 7.2774 0.6206 14 14 5.5063 7.0593 3.3825 15 1 4.4728 8.0154 3.8548 16 1 5.5141 5.8638 4.2634 17 1 6.8395 7.7121 3.4222 18 6 4.0581 2.5286 -0.0073 19 6 5.4877 2.6114 -0.0132 20 7 6.6218 2.6771 -0.0156 21 6 3.4287 1.2829 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2111 2.3161 -0.0004 26 1 1.3172 4.5119 -0.0011 27 1 2.2584 6.1835 0.1775 28 1 3.4866 6.9364 -0.6535 29 1 6.0266 8.0918 0.7856 30 1 4.0182 0.3780 -0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238401196.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = 12.956093 kcal Electronic energy + Delta-G solvation = -15529.115669 eV Core-core repulsion = 12903.702143 eV Total energy + Delta-G solvation = -2625.413526 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90502 -37.81111 -35.49868 -34.45373 -31.64124 -30.86321 -29.34289 -27.16005 -25.90251 -23.21329 -23.02356 -20.20296 -18.82589 -16.63452 -16.24187 -16.17055 -15.58873 -15.28789 -14.39518 -14.12285 -13.82809 -13.35795 -12.81154 -12.77841 -12.54081 -12.03222 -12.01483 -11.90577 -11.68402 -11.35514 -11.04595 -10.81956 -10.60485 -10.46775 -10.01624 -9.70101 -8.69393 -8.55289 -7.70601 -7.34886 -6.17777 -4.31375 1.27441 1.90246 3.19445 3.27274 3.28344 3.32121 3.57517 3.59014 4.27669 4.49766 4.66661 5.03315 5.07186 5.17442 5.20753 5.32700 5.46070 5.56371 5.80730 6.00108 6.27181 6.40431 6.57802 6.84553 6.89916 7.06605 7.49186 7.62616 7.68493 7.97037 8.25110 8.57264 8.74527 8.91095 9.38553 10.83192 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.007488 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.622978 B = 3738.480277 C = 4018.217516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.094 3.906 4 C -0.180 4.180 5 C -0.075 4.075 6 C -0.011 4.011 7 C 0.236 3.764 8 H 0.055 0.945 9 N -0.848 5.848 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.071 3.929 13 N -0.887 5.887 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.273 1.273 17 H -0.285 1.285 18 C 0.001 3.999 19 C 0.272 3.728 20 N -0.424 5.424 21 C -0.108 4.108 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.125 0.875 26 H 0.137 0.863 27 H 0.316 0.684 28 H 0.350 0.650 29 H 0.266 0.734 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -9.279 -1.059 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.050 3.950 4 C -0.200 4.200 5 C -0.093 4.093 6 C -0.015 4.015 7 C 0.126 3.874 8 H 0.073 0.927 9 N -0.376 5.376 10 C -0.587 4.587 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.524 5.524 14 Si 0.722 3.278 15 H -0.205 1.205 16 H -0.197 1.197 17 H -0.211 1.211 18 C -0.003 4.003 19 C -0.043 4.043 20 N -0.099 5.099 21 C -0.129 4.129 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.143 0.857 26 H 0.155 0.845 27 H 0.126 0.874 28 H 0.164 0.836 29 H 0.076 0.924 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.335 -9.691 -1.754 13.569 hybrid contribution -0.136 1.059 1.932 2.208 sum -9.471 -8.632 0.179 12.816 Atomic orbital electron populations 1.22976 0.78924 1.03356 1.01294 1.86016 1.20893 1.27032 1.89676 1.18538 0.91652 0.84086 1.00741 1.21395 0.99717 0.92443 1.06436 1.20765 0.94036 0.96796 0.97722 1.20565 0.93155 0.95674 0.92087 1.18005 0.90345 0.83863 0.95168 0.92692 1.59499 1.14105 1.14277 1.49692 1.21671 1.36558 1.06925 0.93522 0.92381 1.24995 0.94309 0.96604 0.97389 1.69867 1.37031 1.15260 1.30282 0.86521 0.77802 0.78838 0.84596 1.20481 1.19741 1.21070 1.15552 0.84793 0.93259 1.06713 1.25307 0.92401 0.92966 0.93601 1.81093 1.12316 1.07893 1.08647 1.20117 0.91560 0.96654 1.04602 0.92812 0.92792 0.88750 0.85675 0.84512 0.87373 0.83630 0.92430 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.28 10.49 -19.44 -0.20 -4.48 16 3 C 0.09 1.41 6.68 -39.27 -0.26 1.15 16 4 C -0.18 -2.60 9.03 -39.35 -0.36 -2.95 16 5 C -0.07 -1.27 9.26 -39.67 -0.37 -1.64 16 6 C -0.01 -0.23 5.06 -104.19 -0.53 -0.76 16 7 C 0.24 5.62 2.30 -70.02 -0.16 5.46 16 8 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 9 N -0.85 -18.48 8.47 -6.65 -0.06 -18.54 16 10 C -0.55 -14.31 8.39 -34.44 -0.29 -14.60 16 11 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 12 C 0.07 1.89 5.36 -17.82 -0.10 1.80 16 13 N -0.89 -24.41 12.16 55.43 0.67 -23.74 16 14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 C 0.00 0.01 5.73 -106.96 -0.61 -0.60 16 19 C 0.27 5.86 13.79 -22.47 -0.31 5.55 16 20 N -0.42 -9.81 18.54 41.84 0.78 -9.04 16 21 C -0.11 -1.77 9.69 -39.01 -0.38 -2.15 16 22 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 23 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.13 1.40 6.28 -52.49 -0.33 1.07 16 26 H 0.14 2.19 6.42 -52.48 -0.34 1.85 16 27 H 0.32 6.39 7.62 -39.30 -0.30 6.09 16 28 H 0.35 8.26 7.83 -39.29 -0.31 7.95 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 268.80 15.07 4.05 4.05 Total: -1.00 -28.96 268.80 -4.99 -33.95 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -2.84 Total: 9.24 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.37 Total: -7.48 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 1.39 Total: -51.31 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.20 Total: -4.48 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.96 -4.99 -33.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238401196.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.904 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds