Wall clock time and date at job start Mon Mar 30 2020 03:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 117.00412 * 2 1 4 4 C 1.38642 * 120.14303 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.08729 * 180.02562 * 4 3 2 6 6 C 1.38515 * 120.39230 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.85270 * 179.72482 * 6 5 4 8 8 H 1.09003 * 109.47038 * 199.99605 * 7 6 5 9 9 N 1.46897 * 109.47004 * 319.99982 * 7 6 5 10 10 C 1.50701 * 109.47141 * 80.00093 * 7 6 5 11 11 H 1.07999 * 120.00076 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00136 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99775 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00253 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46974 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46974 * 119.99687 * 14 12 10 17 17 H 1.48490 * 109.47422 * 240.00183 * 14 12 10 18 18 C 1.37822 * 120.29578 * 359.97438 * 6 5 4 19 19 C 1.39712 * 119.90150 * 0.02562 * 18 6 5 20 20 C 1.43199 * 120.19308 * 180.02562 * 19 18 6 21 21 N 3.53304 * 165.92115 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47704 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46380 * 299.99942 * 1 2 3 24 24 H 1.09001 * 109.47300 * 59.99495 * 1 2 3 25 25 H 1.07993 * 119.95873 * 0.04676 * 4 3 2 26 26 H 1.08005 * 119.80600 * 180.02562 * 5 4 3 27 27 H 1.00900 * 110.99963 * 60.00301 * 9 7 6 28 28 H 1.00903 * 110.99673 * 183.95738 * 9 7 6 29 29 H 0.97009 * 120.00154 * 179.97438 * 13 12 10 30 30 H 1.08009 * 120.04976 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2931 2.3738 0.0005 5 6 1.9214 3.6037 0.0000 6 6 3.3042 3.6842 -0.0016 7 6 3.9771 5.0326 -0.0085 8 1 5.0031 4.9249 -0.3603 9 7 3.2456 5.9404 -0.9023 10 6 3.9819 5.5988 1.3882 11 1 3.5414 5.0384 2.1995 12 6 4.5478 6.8326 1.6300 13 7 5.0838 7.5152 0.6419 14 14 4.5531 7.5346 3.3610 15 1 3.8939 6.5775 4.2854 16 1 5.9539 7.7603 3.7994 17 1 3.8164 8.8238 3.3747 18 6 4.0675 2.5366 -0.0022 19 6 3.4447 1.2860 -0.0016 20 6 4.2317 0.0896 -0.0016 21 7 4.8560 -0.8594 0.0004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.2146 2.3193 0.0017 26 1 1.3310 4.5081 0.0008 27 1 2.2910 6.0568 -0.5970 28 1 3.7134 6.8315 -0.9744 29 1 5.4816 8.3834 0.8119 30 1 5.1454 2.6041 -0.0038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238401311.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:41 Heat of formation + Delta-G solvation = 10.631827 kcal Electronic energy + Delta-G solvation = -15344.941855 eV Core-core repulsion = 12719.427542 eV Total energy + Delta-G solvation = -2625.514313 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.04832 -37.64586 -36.15904 -34.39913 -31.63422 -30.93026 -29.29367 -27.27296 -25.88577 -23.64682 -22.49597 -20.73841 -18.40646 -17.11975 -16.62034 -15.95056 -15.72206 -15.15617 -14.33032 -14.11445 -13.95855 -13.52677 -12.95100 -12.89251 -12.60481 -12.46648 -12.04761 -11.86609 -11.64134 -11.37632 -11.03846 -10.84147 -10.70515 -10.58329 -9.99838 -9.77222 -8.74166 -8.62438 -7.76071 -7.26600 -6.17121 -4.34524 1.22255 1.81136 3.04306 3.16746 3.26466 3.29671 3.30144 3.40139 4.21364 4.28348 4.35347 4.96578 5.05344 5.13326 5.15030 5.36288 5.44032 5.72357 5.83517 5.84090 6.16187 6.44072 6.53132 6.82025 6.93046 7.05516 7.45359 7.61685 7.67018 7.87913 7.99078 8.57445 8.83476 9.01193 9.38070 10.80284 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.006609 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.838615 B = 4235.743393 C = 4471.450155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.147 3.853 4 C -0.212 4.212 5 C -0.036 4.036 6 C -0.058 4.058 7 C 0.242 3.758 8 H 0.050 0.950 9 N -0.850 5.850 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.892 5.892 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.038 4.038 19 C -0.071 4.071 20 C 0.278 3.722 21 N -0.444 5.444 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.311 0.689 28 H 0.357 0.643 29 H 0.266 0.734 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -6.783 -1.199 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.099 3.901 4 C -0.230 4.230 5 C -0.056 4.056 6 C -0.059 4.059 7 C 0.132 3.868 8 H 0.068 0.932 9 N -0.380 5.380 10 C -0.587 4.587 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.059 4.059 19 C -0.076 4.076 20 C -0.036 4.036 21 N -0.121 5.121 22 H 0.114 0.886 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.120 0.880 28 H 0.174 0.826 29 H 0.076 0.924 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.970 -8.819 -1.820 12.025 hybrid contribution -0.554 1.616 1.916 2.567 sum -8.523 -7.203 0.096 11.160 Atomic orbital electron populations 1.23046 0.78365 1.03643 1.01605 1.86020 1.21432 1.27091 1.88648 1.18745 0.90257 0.84438 0.96675 1.21087 0.99681 0.91889 1.10386 1.21028 0.94786 0.96508 0.93243 1.20354 0.93185 0.96665 0.95736 1.17987 0.93144 0.84506 0.91206 0.93173 1.59547 1.05280 1.19831 1.53338 1.21871 1.38927 1.03129 0.94747 0.92331 1.25017 0.94228 0.96924 0.97383 1.69743 1.38406 1.13757 1.31166 0.86469 0.77931 0.78881 0.84343 1.19679 1.20821 1.20927 1.20944 1.00369 0.89000 0.95593 1.15278 0.88051 0.88316 1.15912 1.25480 0.92781 0.92550 0.92778 1.81127 1.09623 1.10669 1.10658 0.88581 0.92466 0.92436 0.85271 0.85212 0.87985 0.82603 0.92404 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.54 9.93 -18.83 -0.19 -4.72 16 3 C 0.15 2.26 6.69 -38.71 -0.26 2.01 16 4 C -0.21 -3.02 9.03 -39.48 -0.36 -3.38 16 5 C -0.04 -0.61 9.27 -39.53 -0.37 -0.97 16 6 C -0.06 -1.12 4.89 -104.67 -0.51 -1.63 16 7 C 0.24 5.46 2.94 -70.02 -0.21 5.26 16 8 H 0.05 1.25 7.99 -51.93 -0.41 0.84 16 9 N -0.85 -18.38 9.02 -6.65 -0.06 -18.44 16 10 C -0.55 -13.61 8.70 -34.44 -0.30 -13.91 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.07 1.71 5.38 -17.82 -0.10 1.61 16 13 N -0.89 -23.30 11.54 55.43 0.64 -22.66 16 14 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C -0.04 -0.68 9.37 -39.18 -0.37 -1.05 16 19 C -0.07 -1.20 5.75 -106.70 -0.61 -1.82 16 20 C 0.28 4.93 14.87 -22.47 -0.33 4.59 16 21 N -0.44 -8.38 18.54 41.84 0.78 -7.60 16 22 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 24 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 25 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 26 H 0.13 2.04 6.65 -52.48 -0.35 1.69 16 27 H 0.31 6.22 7.32 -39.29 -0.29 5.93 16 28 H 0.36 8.44 7.08 -39.29 -0.28 8.16 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.14 2.30 8.03 -52.48 -0.42 1.88 16 LS Contribution 269.46 15.07 4.06 4.06 Total: -1.00 -27.47 269.46 -5.05 -32.52 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -2.84 Total: 9.91 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.42 Total: -8.02 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 1.36 Total: -48.70 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.19 Total: -4.72 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.47 -5.05 -32.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238401311.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.151 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds