Wall clock time and date at job start Mon Mar 30 2020 03:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 117.00412 * 2 1 4 4 C 1.38642 * 120.14303 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.08729 * 180.02562 * 4 3 2 6 6 C 1.38515 * 120.39230 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.85270 * 179.72482 * 6 5 4 8 8 H 1.09003 * 109.47038 * 199.99605 * 7 6 5 9 9 N 1.46897 * 109.47004 * 319.99982 * 7 6 5 10 10 C 1.50701 * 109.47141 * 80.00093 * 7 6 5 11 11 H 1.07999 * 120.00076 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00136 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99775 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00253 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46974 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46974 * 119.99687 * 14 12 10 17 17 H 1.48490 * 109.47422 * 240.00183 * 14 12 10 18 18 C 1.37822 * 120.29578 * 359.97438 * 6 5 4 19 19 C 1.39712 * 119.90150 * 0.02562 * 18 6 5 20 20 C 1.43199 * 120.19308 * 180.02562 * 19 18 6 21 21 N 3.53304 * 165.92115 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47704 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46380 * 299.99942 * 1 2 3 24 24 H 1.09001 * 109.47300 * 59.99495 * 1 2 3 25 25 H 1.07993 * 119.95873 * 0.04676 * 4 3 2 26 26 H 1.08005 * 119.80600 * 180.02562 * 5 4 3 27 27 H 1.00900 * 110.99963 * 60.00301 * 9 7 6 28 28 H 1.00903 * 110.99673 * 183.95738 * 9 7 6 29 29 H 0.97009 * 120.00154 * 179.97438 * 13 12 10 30 30 H 1.08009 * 120.04976 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2931 2.3738 0.0005 5 6 1.9214 3.6037 0.0000 6 6 3.3042 3.6842 -0.0016 7 6 3.9771 5.0326 -0.0085 8 1 5.0031 4.9249 -0.3603 9 7 3.2456 5.9404 -0.9023 10 6 3.9819 5.5988 1.3882 11 1 3.5414 5.0384 2.1995 12 6 4.5478 6.8326 1.6300 13 7 5.0838 7.5152 0.6419 14 14 4.5531 7.5346 3.3610 15 1 3.8939 6.5775 4.2854 16 1 5.9539 7.7603 3.7994 17 1 3.8164 8.8238 3.3747 18 6 4.0675 2.5366 -0.0022 19 6 3.4447 1.2860 -0.0016 20 6 4.2317 0.0896 -0.0016 21 7 4.8560 -0.8594 0.0004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.2146 2.3193 0.0017 26 1 1.3310 4.5081 0.0008 27 1 2.2910 6.0568 -0.5970 28 1 3.7134 6.8315 -0.9744 29 1 5.4816 8.3834 0.8119 30 1 5.1454 2.6041 -0.0038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238401311.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:40 Heat of formation + Delta-G solvation = -7.016841 kcal Electronic energy + Delta-G solvation = -15345.707159 eV Core-core repulsion = 12719.427542 eV Total energy + Delta-G solvation = -2626.279617 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.25316 -38.90477 -37.61191 -36.06706 -33.38885 -32.25142 -30.67964 -28.29164 -27.61966 -25.02315 -23.99488 -22.14717 -19.66076 -18.60756 -18.25081 -17.28633 -16.82503 -16.70022 -16.03499 -15.35233 -15.10058 -14.91705 -14.69201 -14.32220 -14.02048 -13.89684 -13.41395 -13.23386 -12.96535 -12.85459 -12.69341 -12.55507 -12.04116 -11.87438 -11.63911 -11.47929 -10.65895 -9.91691 -9.22192 -8.94623 -8.06062 -6.32237 -0.09978 0.52785 1.39756 1.44964 1.54061 1.64355 2.00703 2.29315 2.41124 2.92348 2.96874 3.11862 3.93182 4.03297 4.30970 4.48486 4.50389 4.51325 4.55463 4.78105 4.82681 4.88139 5.21074 5.29589 5.47923 5.71201 5.73291 5.95022 6.13779 6.33892 6.52161 6.71193 6.98953 7.20322 7.45054 8.86857 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.006609 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.838615 B = 4235.743393 C = 4471.450155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.161 3.839 4 C -0.195 4.195 5 C -0.034 4.034 6 C -0.085 4.085 7 C 0.245 3.755 8 H 0.014 0.986 9 N -0.842 5.842 10 C -0.555 4.555 11 H 0.053 0.947 12 C 0.024 3.976 13 N -0.916 5.916 14 Si 0.953 3.047 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.278 1.278 18 C -0.042 4.042 19 C -0.083 4.083 20 C 0.290 3.710 21 N -0.470 5.470 22 H 0.117 0.883 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.171 0.829 26 H 0.139 0.861 27 H 0.321 0.679 28 H 0.346 0.654 29 H 0.266 0.734 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 -7.449 -0.714 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.112 3.888 4 C -0.213 4.213 5 C -0.053 4.053 6 C -0.086 4.086 7 C 0.135 3.865 8 H 0.032 0.968 9 N -0.371 5.371 10 C -0.595 4.595 11 H 0.071 0.929 12 C -0.176 4.176 13 N -0.555 5.555 14 Si 0.779 3.221 15 H -0.195 1.195 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.063 4.063 19 C -0.088 4.088 20 C -0.023 4.023 21 N -0.147 5.147 22 H 0.136 0.864 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.188 0.812 26 H 0.157 0.843 27 H 0.132 0.868 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.314 -9.505 -1.335 14.089 hybrid contribution 0.072 1.732 1.737 2.454 sum -10.241 -7.772 0.402 12.863 Atomic orbital electron populations 1.23471 0.75501 1.05790 1.03168 1.86029 1.24361 1.26325 1.88028 1.18830 0.89740 0.85528 0.94703 1.21373 1.01535 0.90159 1.08276 1.21146 0.93612 0.98037 0.92520 1.20060 0.94535 0.95022 0.99016 1.17764 0.92073 0.86617 0.90041 0.96764 1.59499 1.05634 1.18901 1.53037 1.22128 1.38470 1.03138 0.95722 0.92919 1.25677 0.94182 0.97429 1.00349 1.69841 1.39109 1.14002 1.32589 0.85584 0.77521 0.78259 0.80686 1.19515 1.21207 1.20393 1.20840 1.00214 0.89316 0.95978 1.15262 0.89016 0.87354 1.17145 1.25604 0.92285 0.92398 0.92029 1.81127 1.10243 1.11531 1.11772 0.86437 0.90918 0.90699 0.81155 0.84289 0.86829 0.83985 0.92431 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.43 9.93 -90.29 -0.90 -9.33 16 3 C 0.16 4.53 6.69 22.83 0.15 4.69 16 4 C -0.20 -4.86 9.03 22.34 0.20 -4.66 16 5 C -0.03 -1.06 9.27 22.30 0.21 -0.85 16 6 C -0.09 -3.25 4.89 -19.90 -0.10 -3.35 16 7 C 0.25 11.31 2.94 43.42 0.13 11.43 16 8 H 0.01 0.75 7.99 -2.39 -0.02 0.73 16 9 N -0.84 -36.58 9.02 -174.95 -1.58 -38.15 16 10 C -0.55 -27.81 8.70 25.60 0.22 -27.58 16 11 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 12 C 0.02 1.22 5.38 84.65 0.46 1.67 16 13 N -0.92 -48.46 11.54 21.45 0.25 -48.21 16 14 Si 0.95 40.95 29.54 68.60 2.03 42.98 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 16 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 18 C -0.04 -1.52 9.37 22.53 0.21 -1.31 16 19 C -0.08 -2.74 5.75 -21.21 -0.12 -2.86 16 20 C 0.29 10.14 14.87 88.33 1.31 11.46 16 21 N -0.47 -17.57 18.54 19.00 0.35 -17.22 16 22 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 0.84 7.66 -2.38 -0.02 0.83 16 24 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 25 H 0.17 2.83 6.30 -2.91 -0.02 2.81 16 26 H 0.14 4.02 6.65 -2.91 -0.02 4.00 16 27 H 0.32 12.64 7.32 -89.69 -0.66 11.98 16 28 H 0.35 16.56 7.08 -89.69 -0.63 15.93 16 29 H 0.27 13.48 8.31 -92.70 -0.77 12.71 16 30 H 0.13 4.61 8.03 -2.91 -0.02 4.59 16 Total: -1.00 -58.98 269.46 3.84 -55.14 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.10 Total: 24.84 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 3.79 Total: -10.05 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -0.98 Total: -103.58 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.90 Total: -9.33 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -58.98 3.84 -55.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238401311.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.128 kcal (2) G-P(sol) polarization free energy of solvation -58.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds