Wall clock time and date at job start Mon Mar 30 2020 03:41:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35708 * 117.00412 * 2 1
4 4 C 1.38642 * 120.14303 * 0.02562 * 3 2 1
5 5 C 1.38106 * 120.08729 * 180.02562 * 4 3 2
6 6 C 1.38515 * 120.39230 * 0.02562 * 5 4 3
7 7 C 1.50702 * 119.85270 * 179.72482 * 6 5 4
8 8 H 1.09003 * 109.47038 * 199.99605 * 7 6 5
9 9 N 1.46897 * 109.47004 * 319.99982 * 7 6 5
10 10 C 1.50701 * 109.47141 * 80.00093 * 7 6 5
11 11 H 1.07999 * 120.00076 * 359.97438 * 10 7 6
12 12 C 1.37876 * 120.00136 * 180.02562 * 10 7 6
13 13 N 1.31513 * 119.99775 * 359.97438 * 12 10 7
14 14 Si 1.86800 * 120.00253 * 179.97438 * 12 10 7
15 15 H 1.48503 * 109.46974 * 0.02562 * 14 12 10
16 16 H 1.48502 * 109.46974 * 119.99687 * 14 12 10
17 17 H 1.48490 * 109.47422 * 240.00183 * 14 12 10
18 18 C 1.37822 * 120.29578 * 359.97438 * 6 5 4
19 19 C 1.39712 * 119.90150 * 0.02562 * 18 6 5
20 20 C 1.43199 * 120.19308 * 180.02562 * 19 18 6
21 21 N 3.53304 * 165.92115 * 179.97438 * 2 1 3
22 22 H 1.08994 * 109.47704 * 180.02562 * 1 2 3
23 23 H 1.09006 * 109.46380 * 299.99942 * 1 2 3
24 24 H 1.09001 * 109.47300 * 59.99495 * 1 2 3
25 25 H 1.07993 * 119.95873 * 0.04676 * 4 3 2
26 26 H 1.08005 * 119.80600 * 180.02562 * 5 4 3
27 27 H 1.00900 * 110.99963 * 60.00301 * 9 7 6
28 28 H 1.00903 * 110.99673 * 183.95738 * 9 7 6
29 29 H 0.97009 * 120.00154 * 179.97438 * 13 12 10
30 30 H 1.08009 * 120.04976 * 179.97438 * 18 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2091 0.0000
4 6 1.2931 2.3738 0.0005
5 6 1.9214 3.6037 0.0000
6 6 3.3042 3.6842 -0.0016
7 6 3.9771 5.0326 -0.0085
8 1 5.0031 4.9249 -0.3603
9 7 3.2456 5.9404 -0.9023
10 6 3.9819 5.5988 1.3882
11 1 3.5414 5.0384 2.1995
12 6 4.5478 6.8326 1.6300
13 7 5.0838 7.5152 0.6419
14 14 4.5531 7.5346 3.3610
15 1 3.8939 6.5775 4.2854
16 1 5.9539 7.7603 3.7994
17 1 3.8164 8.8238 3.3747
18 6 4.0675 2.5366 -0.0022
19 6 3.4447 1.2860 -0.0016
20 6 4.2317 0.0896 -0.0016
21 7 4.8560 -0.8594 0.0004
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3632 0.5139 0.8901
24 1 -0.3634 0.5139 -0.8899
25 1 0.2146 2.3193 0.0017
26 1 1.3310 4.5081 0.0008
27 1 2.2910 6.0568 -0.5970
28 1 3.7134 6.8315 -0.9744
29 1 5.4816 8.3834 0.8119
30 1 5.1454 2.6041 -0.0038
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238401311.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:40
Heat of formation + Delta-G solvation = -7.016841 kcal
Electronic energy + Delta-G solvation = -15345.707159 eV
Core-core repulsion = 12719.427542 eV
Total energy + Delta-G solvation = -2626.279617 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 232.095 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.25316 -38.90477 -37.61191 -36.06706 -33.38885 -32.25142 -30.67964 -28.29164
-27.61966 -25.02315 -23.99488 -22.14717 -19.66076 -18.60756 -18.25081 -17.28633
-16.82503 -16.70022 -16.03499 -15.35233 -15.10058 -14.91705 -14.69201 -14.32220
-14.02048 -13.89684 -13.41395 -13.23386 -12.96535 -12.85459 -12.69341 -12.55507
-12.04116 -11.87438 -11.63911 -11.47929 -10.65895 -9.91691 -9.22192 -8.94623
-8.06062 -6.32237 -0.09978 0.52785 1.39756 1.44964 1.54061 1.64355
2.00703 2.29315 2.41124 2.92348 2.96874 3.11862 3.93182 4.03297
4.30970 4.48486 4.50389 4.51325 4.55463 4.78105 4.82681 4.88139
5.21074 5.29589 5.47923 5.71201 5.73291 5.95022 6.13779 6.33892
6.52161 6.71193 6.98953 7.20322 7.45054 8.86857
Molecular weight = 232.10amu
Principal moments of inertia in cm(-1)
A = 0.030666 B = 0.006609 C = 0.006260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 912.838615 B = 4235.743393 C = 4471.450155
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 O -0.334 6.334
3 C 0.161 3.839
4 C -0.195 4.195
5 C -0.034 4.034
6 C -0.085 4.085
7 C 0.245 3.755
8 H 0.014 0.986
9 N -0.842 5.842
10 C -0.555 4.555
11 H 0.053 0.947
12 C 0.024 3.976
13 N -0.916 5.916
14 Si 0.953 3.047
15 H -0.271 1.271
16 H -0.286 1.286
17 H -0.278 1.278
18 C -0.042 4.042
19 C -0.083 4.083
20 C 0.290 3.710
21 N -0.470 5.470
22 H 0.117 0.883
23 H 0.072 0.928
24 H 0.074 0.926
25 H 0.171 0.829
26 H 0.139 0.861
27 H 0.321 0.679
28 H 0.346 0.654
29 H 0.266 0.734
30 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.595 -7.449 -0.714 13.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.247 6.247
3 C 0.112 3.888
4 C -0.213 4.213
5 C -0.053 4.053
6 C -0.086 4.086
7 C 0.135 3.865
8 H 0.032 0.968
9 N -0.371 5.371
10 C -0.595 4.595
11 H 0.071 0.929
12 C -0.176 4.176
13 N -0.555 5.555
14 Si 0.779 3.221
15 H -0.195 1.195
16 H -0.212 1.212
17 H -0.204 1.204
18 C -0.063 4.063
19 C -0.088 4.088
20 C -0.023 4.023
21 N -0.147 5.147
22 H 0.136 0.864
23 H 0.091 0.909
24 H 0.093 0.907
25 H 0.188 0.812
26 H 0.157 0.843
27 H 0.132 0.868
28 H 0.160 0.840
29 H 0.076 0.924
30 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -10.314 -9.505 -1.335 14.089
hybrid contribution 0.072 1.732 1.737 2.454
sum -10.241 -7.772 0.402 12.863
Atomic orbital electron populations
1.23471 0.75501 1.05790 1.03168 1.86029 1.24361 1.26325 1.88028
1.18830 0.89740 0.85528 0.94703 1.21373 1.01535 0.90159 1.08276
1.21146 0.93612 0.98037 0.92520 1.20060 0.94535 0.95022 0.99016
1.17764 0.92073 0.86617 0.90041 0.96764 1.59499 1.05634 1.18901
1.53037 1.22128 1.38470 1.03138 0.95722 0.92919 1.25677 0.94182
0.97429 1.00349 1.69841 1.39109 1.14002 1.32589 0.85584 0.77521
0.78259 0.80686 1.19515 1.21207 1.20393 1.20840 1.00214 0.89316
0.95978 1.15262 0.89016 0.87354 1.17145 1.25604 0.92285 0.92398
0.92029 1.81127 1.10243 1.11531 1.11772 0.86437 0.90918 0.90699
0.81155 0.84289 0.86829 0.83985 0.92431 0.85328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.20 9.81 113.37 1.11 1.32 16
2 O -0.33 -8.43 9.93 -90.29 -0.90 -9.33 16
3 C 0.16 4.53 6.69 22.83 0.15 4.69 16
4 C -0.20 -4.86 9.03 22.34 0.20 -4.66 16
5 C -0.03 -1.06 9.27 22.30 0.21 -0.85 16
6 C -0.09 -3.25 4.89 -19.90 -0.10 -3.35 16
7 C 0.25 11.31 2.94 43.42 0.13 11.43 16
8 H 0.01 0.75 7.99 -2.39 -0.02 0.73 16
9 N -0.84 -36.58 9.02 -174.95 -1.58 -38.15 16
10 C -0.55 -27.81 8.70 25.60 0.22 -27.58 16
11 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16
12 C 0.02 1.22 5.38 84.65 0.46 1.67 16
13 N -0.92 -48.46 11.54 21.45 0.25 -48.21 16
14 Si 0.95 40.95 29.54 68.60 2.03 42.98 16
15 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16
16 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16
17 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16
18 C -0.04 -1.52 9.37 22.53 0.21 -1.31 16
19 C -0.08 -2.74 5.75 -21.21 -0.12 -2.86 16
20 C 0.29 10.14 14.87 88.33 1.31 11.46 16
21 N -0.47 -17.57 18.54 19.00 0.35 -17.22 16
22 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16
23 H 0.07 0.84 7.66 -2.38 -0.02 0.83 16
24 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16
25 H 0.17 2.83 6.30 -2.91 -0.02 2.81 16
26 H 0.14 4.02 6.65 -2.91 -0.02 4.00 16
27 H 0.32 12.64 7.32 -89.69 -0.66 11.98 16
28 H 0.35 16.56 7.08 -89.69 -0.63 15.93 16
29 H 0.27 13.48 8.31 -92.70 -0.77 12.71 16
30 H 0.13 4.61 8.03 -2.91 -0.02 4.59 16
Total: -1.00 -58.98 269.46 3.84 -55.14
By element:
Atomic # 1 Polarization: 24.94 SS G_CDS: -0.10 Total: 24.84 kcal
Atomic # 6 Polarization: -13.83 SS G_CDS: 3.79 Total: -10.05 kcal
Atomic # 7 Polarization: -102.61 SS G_CDS: -0.98 Total: -103.58 kcal
Atomic # 8 Polarization: -8.43 SS G_CDS: -0.90 Total: -9.33 kcal
Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal
Total: -58.98 3.84 -55.14 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238401311.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.128 kcal
(2) G-P(sol) polarization free energy of solvation -58.982 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.145 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds