Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47088 * 300.00247 * 3 2 1 6 6 H 1.48501 * 109.47031 * 59.99816 * 3 2 1 7 7 C 1.37872 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99835 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47306 * 299.99713 * 9 7 2 11 11 N 1.46893 * 109.47389 * 59.99949 * 9 7 2 12 12 C 1.50701 * 109.47168 * 179.97438 * 9 7 2 13 13 C 1.37729 * 119.69408 * 264.81321 * 12 9 7 14 14 C 1.39056 * 119.99879 * 179.81068 * 13 12 9 15 15 N 1.37905 * 133.36346 * 180.02562 * 14 13 12 16 16 H 0.96998 * 125.07186 * 0.30482 * 15 14 13 17 17 C 1.36807 * 109.85110 * 180.28910 * 15 14 13 18 18 C 1.34248 * 109.94170 * 359.97438 * 17 15 14 19 19 C 1.40649 * 119.51971 * 0.39331 * 14 13 12 20 20 C 1.39633 * 119.99367 * 359.79316 * 19 14 13 21 21 C 1.38074 * 119.60309 * 0.02562 * 20 19 14 22 22 O 1.35992 * 119.86866 * 180.02562 * 21 20 19 23 23 H 0.97002 * 120.00366 * 359.97438 * 1 2 3 24 24 H 1.00907 * 111.00440 * 59.99847 * 11 9 7 25 25 H 1.00902 * 111.00369 * 183.95270 * 11 9 7 26 26 H 1.08007 * 119.99558 * 359.93900 * 13 12 9 27 27 H 1.07992 * 125.02715 * 180.02562 * 17 15 14 28 28 H 1.08001 * 126.48146 * 179.97438 * 18 17 15 29 29 H 1.08000 * 120.20153 * 180.02562 * 20 19 14 30 30 H 0.96706 * 114.00288 * 89.99507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1991 12 6 2.2304 -3.6445 0.0005 13 6 2.5915 -4.2334 -1.1910 14 6 3.4976 -5.2881 -1.1987 15 7 4.0414 -6.0620 -2.2023 16 1 3.8484 -5.9645 -3.1479 17 6 4.8938 -6.9874 -1.6652 18 6 4.9344 -6.8521 -0.3302 19 6 4.0327 -5.7510 0.0169 20 6 3.6565 -5.1490 1.2193 21 6 2.7583 -4.1005 1.2055 22 8 2.3885 -3.5100 2.3733 23 1 -0.4851 0.8400 0.0004 24 1 0.9652 -2.5260 -2.0381 25 1 -0.1570 -3.4139 -1.1907 26 1 2.1725 -3.8745 -2.1195 27 1 5.4521 -7.7181 -2.2315 28 1 5.5196 -7.4443 0.3577 29 1 4.0656 -5.5015 2.1546 30 1 2.9505 -2.7673 2.6338 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238601331.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 20.287727 kcal Electronic energy + Delta-G solvation = -15784.075869 eV Core-core repulsion = 13158.980267 eV Total energy + Delta-G solvation = -2625.095602 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.80927 -38.10491 -35.33038 -33.70618 -31.76711 -30.73427 -28.06484 -27.92403 -25.86345 -23.02922 -21.68082 -20.38674 -19.75568 -17.64260 -17.38999 -16.43908 -15.30866 -14.72776 -14.46603 -14.41105 -13.96067 -13.71202 -13.30309 -12.96242 -12.47123 -12.24893 -12.17356 -11.30809 -11.00674 -10.83801 -10.73935 -10.50195 -9.98760 -9.59650 -9.40400 -9.02868 -8.42538 -7.42722 -7.29051 -7.03064 -5.86011 -4.01785 1.58214 2.08773 3.02602 3.32463 3.41035 3.41580 3.44149 4.28056 4.50587 4.89033 5.18076 5.25806 5.37720 5.53828 5.73307 5.84683 6.01121 6.22232 6.27932 6.38725 6.61375 6.77808 7.08160 7.10898 7.17336 7.50344 7.60638 7.80800 7.90051 8.22731 8.48382 8.65475 9.02213 9.16421 9.66715 11.18018 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.007440 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.778064 B = 3762.317512 C = 3936.867139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.085 3.915 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.257 3.743 10 H 0.059 0.941 11 N -0.810 5.810 12 C -0.070 4.070 13 C -0.136 4.136 14 C 0.093 3.907 15 N -0.601 5.601 16 H 0.411 0.589 17 C 0.037 3.963 18 C -0.207 4.207 19 C -0.117 4.117 20 C -0.112 4.112 21 C 0.091 3.909 22 O -0.492 6.492 23 H 0.255 0.745 24 H 0.315 0.685 25 H 0.299 0.701 26 H 0.118 0.882 27 H 0.163 0.837 28 H 0.139 0.861 29 H 0.119 0.881 30 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.164 -11.108 -2.547 14.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.122 4.122 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.147 3.853 10 H 0.077 0.923 11 N -0.337 5.337 12 C -0.074 4.074 13 C -0.157 4.157 14 C -0.013 4.013 15 N -0.205 5.205 16 H 0.247 0.753 17 C -0.089 4.089 18 C -0.233 4.233 19 C -0.121 4.121 20 C -0.131 4.131 21 C 0.045 3.955 22 O -0.302 6.302 23 H 0.065 0.935 24 H 0.128 0.872 25 H 0.109 0.891 26 H 0.136 0.864 27 H 0.180 0.820 28 H 0.157 0.843 29 H 0.137 0.863 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.177 -10.734 -2.403 13.134 hybrid contribution 1.443 0.409 -0.735 1.670 sum 8.620 -10.325 -3.138 13.811 Atomic orbital electron populations 1.70115 1.05667 1.25550 1.46572 1.24936 0.94607 0.98438 0.94229 0.86720 0.80202 0.84484 0.77552 1.19954 1.21100 1.21029 1.20792 0.92042 0.89374 1.54582 0.93006 1.18151 0.87615 0.88337 0.91150 0.92310 1.59196 1.28037 1.42077 1.04349 1.21823 0.98120 0.96798 0.90662 1.19714 1.00550 0.96808 0.98677 1.18312 0.99169 0.96043 0.87785 1.41762 1.40221 1.30280 1.08235 0.75320 1.21634 0.97199 0.95725 0.94381 1.21579 1.05496 1.01807 0.94370 1.18867 1.01643 0.99416 0.92168 1.20663 0.98069 0.97925 0.96444 1.18041 0.96798 0.94938 0.85705 1.84740 1.57879 1.50455 1.37084 0.93487 0.87193 0.89093 0.86442 0.81961 0.84287 0.86300 0.75759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.54 12.77 55.43 0.71 -23.83 16 2 C 0.08 2.34 5.39 -17.82 -0.10 2.25 16 3 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -14.31 8.71 -34.44 -0.30 -14.61 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.26 6.41 2.56 -70.02 -0.18 6.23 16 10 H 0.06 1.66 7.67 -51.93 -0.40 1.26 16 11 N -0.81 -19.12 8.12 -6.66 -0.05 -19.17 16 12 C -0.07 -1.52 5.00 -104.44 -0.52 -2.04 16 13 C -0.14 -2.64 9.27 -39.46 -0.37 -3.01 16 14 C 0.09 1.62 7.27 -83.92 -0.61 1.01 16 15 N -0.60 -8.05 6.08 -10.63 -0.06 -8.12 16 16 H 0.41 4.22 8.96 -40.82 -0.37 3.86 16 17 C 0.04 0.44 11.81 -16.74 -0.20 0.24 16 18 C -0.21 -2.92 11.08 -37.66 -0.42 -3.33 16 19 C -0.12 -2.06 6.37 -105.14 -0.67 -2.73 16 20 C -0.11 -2.04 10.03 -39.12 -0.39 -2.43 16 21 C 0.09 1.87 6.66 -39.27 -0.26 1.61 16 22 O -0.49 -9.84 12.60 -19.71 -0.25 -10.08 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.32 7.01 7.17 -39.29 -0.28 6.73 16 25 H 0.30 6.40 9.06 -39.29 -0.36 6.04 16 26 H 0.12 2.14 6.24 -52.48 -0.33 1.81 16 27 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.39 6.45 9.07 45.56 0.41 6.87 16 LS Contribution 262.97 15.07 3.96 3.96 Total: -1.00 -32.17 262.97 -6.85 -39.03 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -2.13 Total: 18.94 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -4.01 Total: -16.80 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.59 Total: -51.12 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.25 Total: -10.08 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.17 -6.85 -39.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601331.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.317 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds