Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47088 * 300.00247 * 3 2 1 6 6 H 1.48501 * 109.47031 * 59.99816 * 3 2 1 7 7 C 1.37872 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99835 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47306 * 299.99713 * 9 7 2 11 11 N 1.46893 * 109.47389 * 59.99949 * 9 7 2 12 12 C 1.50701 * 109.47168 * 179.97438 * 9 7 2 13 13 C 1.37729 * 119.69408 * 264.81321 * 12 9 7 14 14 C 1.39056 * 119.99879 * 179.81068 * 13 12 9 15 15 N 1.37905 * 133.36346 * 180.02562 * 14 13 12 16 16 H 0.96998 * 125.07186 * 0.30482 * 15 14 13 17 17 C 1.36807 * 109.85110 * 180.28910 * 15 14 13 18 18 C 1.34248 * 109.94170 * 359.97438 * 17 15 14 19 19 C 1.40649 * 119.51971 * 0.39331 * 14 13 12 20 20 C 1.39633 * 119.99367 * 359.79316 * 19 14 13 21 21 C 1.38074 * 119.60309 * 0.02562 * 20 19 14 22 22 O 1.35992 * 119.86866 * 180.02562 * 21 20 19 23 23 H 0.97002 * 120.00366 * 359.97438 * 1 2 3 24 24 H 1.00907 * 111.00440 * 59.99847 * 11 9 7 25 25 H 1.00902 * 111.00369 * 183.95270 * 11 9 7 26 26 H 1.08007 * 119.99558 * 359.93900 * 13 12 9 27 27 H 1.07992 * 125.02715 * 180.02562 * 17 15 14 28 28 H 1.08001 * 126.48146 * 179.97438 * 18 17 15 29 29 H 1.08000 * 120.20153 * 180.02562 * 20 19 14 30 30 H 0.96706 * 114.00288 * 89.99507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1991 12 6 2.2304 -3.6445 0.0005 13 6 2.5915 -4.2334 -1.1910 14 6 3.4976 -5.2881 -1.1987 15 7 4.0414 -6.0620 -2.2023 16 1 3.8484 -5.9645 -3.1479 17 6 4.8938 -6.9874 -1.6652 18 6 4.9344 -6.8521 -0.3302 19 6 4.0327 -5.7510 0.0169 20 6 3.6565 -5.1490 1.2193 21 6 2.7583 -4.1005 1.2055 22 8 2.3885 -3.5100 2.3733 23 1 -0.4851 0.8400 0.0004 24 1 0.9652 -2.5260 -2.0381 25 1 -0.1570 -3.4139 -1.1907 26 1 2.1725 -3.8745 -2.1195 27 1 5.4521 -7.7181 -2.2315 28 1 5.5196 -7.4443 0.3577 29 1 4.0656 -5.5015 2.1546 30 1 2.9505 -2.7673 2.6338 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238601331.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = -4.908303 kcal Electronic energy + Delta-G solvation = -15785.168451 eV Core-core repulsion = 13158.980267 eV Total energy + Delta-G solvation = -2626.188184 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05804 -39.57167 -37.00378 -35.34979 -33.61317 -32.16888 -29.53599 -29.32280 -27.79166 -24.66498 -23.18787 -21.55968 -21.30629 -18.92477 -18.81835 -18.47754 -16.89528 -16.26628 -16.23607 -16.15134 -15.36906 -15.13577 -14.70058 -14.30787 -14.02955 -13.99835 -13.43791 -13.09648 -12.79437 -12.63123 -12.41909 -12.10123 -11.81909 -11.19729 -11.15709 -10.58008 -10.49003 -8.98598 -8.82330 -8.50055 -7.95403 -6.18568 0.22884 0.64065 1.42555 1.44674 1.55077 1.90711 2.33073 2.47204 2.87469 3.26969 3.56258 3.89087 4.12731 4.28795 4.35932 4.48295 4.58460 4.79309 4.89687 5.08820 5.20032 5.26879 5.55049 5.67969 5.75837 5.84160 5.88379 6.15605 6.24428 6.67427 6.80427 7.03061 7.10750 7.24472 7.53890 9.07528 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.007440 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.778064 B = 3762.317512 C = 3936.867139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.036 3.964 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.045 0.955 9 C 0.268 3.732 10 H 0.013 0.987 11 N -0.819 5.819 12 C -0.104 4.104 13 C -0.133 4.133 14 C 0.076 3.924 15 N -0.590 5.590 16 H 0.427 0.573 17 C 0.068 3.932 18 C -0.230 4.230 19 C -0.128 4.128 20 C -0.112 4.112 21 C 0.067 3.933 22 O -0.506 6.506 23 H 0.255 0.745 24 H 0.323 0.677 25 H 0.310 0.690 26 H 0.122 0.878 27 H 0.217 0.783 28 H 0.164 0.836 29 H 0.138 0.862 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.483 -12.786 -3.897 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.168 4.168 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.063 0.937 9 C 0.158 3.842 10 H 0.030 0.970 11 N -0.347 5.347 12 C -0.109 4.109 13 C -0.154 4.154 14 C -0.031 4.031 15 N -0.195 5.195 16 H 0.266 0.734 17 C -0.058 4.058 18 C -0.255 4.255 19 C -0.133 4.133 20 C -0.131 4.131 21 C 0.021 3.979 22 O -0.317 6.317 23 H 0.064 0.936 24 H 0.136 0.864 25 H 0.121 0.879 26 H 0.140 0.860 27 H 0.234 0.766 28 H 0.182 0.818 29 H 0.156 0.844 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.512 -12.422 -3.775 16.094 hybrid contribution 0.808 0.751 -0.384 1.168 sum 10.319 -11.671 -4.159 16.124 Atomic orbital electron populations 1.70249 1.07161 1.26281 1.48027 1.25681 0.95365 1.01763 0.93980 0.85671 0.79005 0.80278 0.77500 1.19417 1.20873 1.20603 1.21045 0.91819 0.90751 1.53815 0.93690 1.17661 0.87605 0.89243 0.89693 0.96953 1.59012 1.28429 1.42980 1.04281 1.21464 0.99566 0.97425 0.92404 1.19690 1.00690 0.97180 0.97839 1.18285 0.99254 0.96205 0.89384 1.41875 1.39557 1.29493 1.08581 0.73377 1.22505 0.94772 0.94416 0.94108 1.21949 1.06010 1.01597 0.95954 1.19381 1.01935 1.00221 0.91784 1.20828 0.97311 0.97042 0.97922 1.18228 0.98169 0.96209 0.85288 1.84702 1.58703 1.50995 1.37260 0.93589 0.86392 0.87935 0.86040 0.76609 0.81810 0.84396 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.62 12.77 21.44 0.27 -52.35 16 2 C 0.04 2.00 5.39 84.65 0.46 2.46 16 3 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.54 -29.85 8.71 25.60 0.22 -29.62 16 8 H 0.04 2.51 7.74 -2.91 -0.02 2.48 16 9 C 0.27 13.97 2.56 43.42 0.11 14.08 16 10 H 0.01 0.76 7.67 -2.39 -0.02 0.74 16 11 N -0.82 -39.94 8.12 -174.97 -1.42 -41.36 16 12 C -0.10 -4.68 5.00 -19.75 -0.10 -4.78 16 13 C -0.13 -5.14 9.27 22.35 0.21 -4.93 16 14 C 0.08 2.52 7.27 38.97 0.28 2.80 16 15 N -0.59 -13.51 6.08 -187.53 -1.14 -14.65 16 16 H 0.43 7.04 8.96 -92.71 -0.83 6.21 16 17 C 0.07 1.26 11.81 83.01 0.98 2.24 16 18 C -0.23 -5.55 11.08 23.51 0.26 -5.29 16 19 C -0.13 -4.27 6.37 -20.20 -0.13 -4.40 16 20 C -0.11 -4.04 10.03 22.57 0.23 -3.81 16 21 C 0.07 2.82 6.66 22.47 0.15 2.97 16 22 O -0.51 -21.24 12.60 -93.46 -1.18 -22.42 16 23 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.32 14.66 7.17 -89.69 -0.64 14.02 16 25 H 0.31 13.72 9.06 -89.69 -0.81 12.91 16 26 H 0.12 4.42 6.24 -2.91 -0.02 4.41 16 27 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.40 14.04 9.07 -74.05 -0.67 13.37 16 Total: -1.00 -71.37 262.97 -0.51 -71.87 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -1.74 Total: 41.09 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 2.67 Total: -28.27 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -2.29 Total: -108.36 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.18 Total: -22.42 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.37 -0.51 -71.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601331.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.963 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds