Wall clock time and date at job start Mon Mar 30 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00153 * 2 1 4 4 N 1.46499 * 109.47073 * 124.99746 * 3 2 1 5 5 C 1.34774 * 119.99970 * 180.02562 * 4 3 2 6 6 O 1.21514 * 120.00274 * 0.02562 * 5 4 3 7 7 C 1.48141 * 119.99911 * 180.02562 * 5 4 3 8 8 C 1.40146 * 120.83722 * 359.97438 * 7 5 4 9 9 C 1.38654 * 119.39754 * 180.02562 * 8 7 5 10 10 N 1.31391 * 121.15696 * 0.02562 * 9 8 7 11 11 C 1.33556 * 121.83234 * 359.65656 * 10 9 8 12 12 C 1.41383 * 119.76775 * 180.31454 * 11 10 9 13 13 H 1.08005 * 120.00169 * 174.11856 * 12 11 10 14 14 C 1.40065 * 120.00021 * 354.12320 * 12 11 10 15 15 N 1.30719 * 119.99864 * 6.35650 * 14 12 11 16 16 Si 1.86800 * 120.00031 * 186.35808 * 14 12 11 17 17 H 1.48498 * 109.47340 * 94.98236 * 16 14 12 18 18 H 1.48501 * 109.46996 * 214.98393 * 16 14 12 19 19 H 1.48505 * 109.47250 * 334.98282 * 16 14 12 20 20 C 1.39341 * 120.83788 * 179.97438 * 7 5 4 21 21 H 1.08002 * 120.00074 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.00453 * 179.97438 * 1 2 3 23 23 H 1.07995 * 119.99412 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47298 * 5.00116 * 3 2 1 25 25 H 1.08993 * 109.47397 * 245.00331 * 3 2 1 26 26 H 0.96997 * 119.99980 * 0.02562 * 4 3 2 27 27 H 1.07997 * 120.30037 * 359.97438 * 8 7 5 28 28 H 1.07996 * 119.42010 * 179.97438 * 9 8 7 29 29 H 0.97004 * 119.99515 * 179.97438 * 15 14 12 30 30 H 1.08001 * 120.58511 * 359.97438 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 3.7782 2.4089 1.3335 6 8 3.7137 3.3580 0.5775 7 6 4.7193 2.4358 2.4773 8 6 4.8077 1.3511 3.3604 9 6 5.6985 1.4082 4.4214 10 7 6.4604 2.4613 4.6135 11 6 6.4196 3.5184 3.7982 12 6 7.2639 4.6259 4.0421 13 1 7.3038 5.4408 3.3343 14 6 8.0486 4.6664 5.2016 15 7 8.0961 3.6288 5.9952 16 14 9.0273 6.2032 5.6138 17 1 8.2420 7.0561 6.5417 18 1 10.3070 5.8164 6.2602 19 1 9.3109 6.9588 4.3672 20 6 5.5387 3.5400 2.7023 21 1 -0.5400 0.9353 0.0004 22 1 -0.5401 -0.9353 -0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0896 25 1 2.6212 1.4026 -0.9313 26 1 3.0450 0.5744 1.7352 27 1 4.1871 0.4791 3.2163 28 1 5.7667 0.5728 5.1024 29 1 8.6398 3.6568 6.7980 30 1 5.5008 4.3956 2.0443 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259005648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:41 Heat of formation + Delta-G solvation = 13.316762 kcal Electronic energy + Delta-G solvation = -15037.456935 eV Core-core repulsion = 12412.059049 eV Total energy + Delta-G solvation = -2625.397886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.42280 -37.74940 -35.61317 -33.73672 -32.68027 -30.81676 -30.05551 -26.31060 -25.77459 -22.79399 -21.44001 -20.45100 -19.81570 -17.89649 -16.40764 -16.11915 -15.29794 -15.16341 -14.49102 -14.18304 -14.00634 -13.76103 -13.23222 -12.79039 -12.52124 -12.45584 -12.04701 -11.29912 -11.27355 -11.23478 -10.84495 -10.54725 -10.00603 -9.94790 -9.45250 -9.37699 -8.81779 -8.34790 -7.77048 -7.68947 -6.51243 -4.61235 1.94345 2.10049 2.66136 3.06377 3.10584 3.12081 3.70012 3.85843 3.90528 4.67393 4.68390 4.94586 5.40709 5.49570 5.66054 5.78791 5.80450 5.98082 6.19175 6.34467 6.44633 6.57712 6.68818 6.74671 6.99957 7.16913 7.35115 7.41333 7.72781 7.98952 8.13966 8.52700 8.71822 8.79693 9.98124 10.21561 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.058712 B = 0.005144 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.787892 B = 5442.211248 C = 5854.748410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.170 4.170 3 C 0.146 3.854 4 N -0.730 5.730 5 C 0.565 3.435 6 O -0.549 6.549 7 C -0.079 4.079 8 C -0.299 4.299 9 C 0.124 3.876 10 N -0.476 5.476 11 C 0.247 3.753 12 C -0.423 4.423 13 H 0.088 0.912 14 C 0.067 3.933 15 N -0.712 5.712 16 Si 0.911 3.089 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.201 4.201 21 H 0.099 0.901 22 H 0.101 0.899 23 H 0.115 0.885 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.403 0.597 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.275 0.725 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 -5.846 -4.790 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.188 4.188 3 C 0.023 3.977 4 N -0.383 5.383 5 C 0.354 3.646 6 O -0.427 6.427 7 C -0.088 4.088 8 C -0.323 4.323 9 C -0.041 4.041 10 N -0.190 5.190 11 C 0.123 3.877 12 C -0.454 4.454 13 H 0.106 0.894 14 C -0.158 4.158 15 N -0.333 5.333 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.226 4.226 21 H 0.118 0.882 22 H 0.120 0.880 23 H 0.133 0.867 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.238 0.762 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.194 -5.190 -4.459 9.929 hybrid contribution -0.267 0.050 -0.234 0.358 sum -7.461 -5.140 -4.694 10.203 Atomic orbital electron populations 1.23936 0.95764 1.02228 0.99113 1.23062 0.96242 0.98324 1.01218 1.20350 0.91926 0.95159 0.90305 1.45905 1.41178 1.20622 1.30620 1.18833 0.79584 0.81383 0.84763 1.90676 1.68763 1.35647 1.47627 1.19583 0.97643 0.96672 0.94884 1.21325 1.08962 0.99463 1.02513 1.22476 0.91307 0.96398 0.93886 1.68642 1.22283 0.99679 1.28366 1.18609 0.90391 0.91639 0.87101 1.19714 1.18364 1.02692 1.04658 0.89405 1.26097 0.96408 0.97403 0.95933 1.70119 1.27111 1.27573 1.08474 0.86257 0.79070 0.81516 0.79728 1.19354 1.20017 1.18342 1.22013 1.00448 0.98229 1.01870 0.88230 0.88030 0.86708 0.91344 0.90904 0.76176 0.88547 0.85932 0.91420 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 14.32 29.01 0.42 -1.07 16 2 C -0.17 -1.69 9.63 -36.03 -0.35 -2.04 16 3 C 0.15 1.92 6.11 -5.20 -0.03 1.89 16 4 N -0.73 -11.56 5.51 -62.34 -0.34 -11.91 16 5 C 0.56 11.75 7.80 -12.20 -0.10 11.65 16 6 O -0.55 -12.90 16.43 5.35 0.09 -12.82 16 7 C -0.08 -1.81 5.90 -104.70 -0.62 -2.43 16 8 C -0.30 -6.31 9.63 -38.71 -0.37 -6.68 16 9 C 0.12 2.88 11.17 -17.59 -0.20 2.69 16 10 N -0.48 -12.86 7.86 -11.18 -0.09 -12.95 16 11 C 0.25 6.75 6.55 -85.02 -0.56 6.19 16 12 C -0.42 -11.28 9.13 -37.70 -0.34 -11.62 16 13 H 0.09 2.20 7.86 -52.48 -0.41 1.79 16 14 C 0.07 1.69 5.49 -17.34 -0.10 1.60 16 15 N -0.71 -18.57 11.49 55.55 0.64 -17.94 16 16 Si 0.91 18.36 29.56 -169.99 -5.03 13.33 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.20 -5.14 9.40 -38.27 -0.36 -5.50 16 21 H 0.10 0.83 7.84 -52.49 -0.41 0.42 16 22 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 23 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 24 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.40 5.56 6.59 -40.82 -0.27 5.29 16 27 H 0.10 1.65 6.52 -52.49 -0.34 1.31 16 28 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 29 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 30 H 0.11 2.87 7.73 -52.49 -0.41 2.46 16 LS Contribution 272.25 15.07 4.10 4.10 Total: -1.00 -30.53 272.25 -6.30 -36.83 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.07 Total: 6.65 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.60 Total: -5.32 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.21 Total: -42.79 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.53 -6.30 -36.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259005648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.151 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds