Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00153 * 2 1 4 4 N 1.46499 * 109.47073 * 124.99746 * 3 2 1 5 5 C 1.34774 * 119.99970 * 180.02562 * 4 3 2 6 6 O 1.21514 * 120.00274 * 0.02562 * 5 4 3 7 7 C 1.48141 * 119.99911 * 180.02562 * 5 4 3 8 8 C 1.40146 * 120.83722 * 359.97438 * 7 5 4 9 9 C 1.38654 * 119.39754 * 180.02562 * 8 7 5 10 10 N 1.31391 * 121.15696 * 0.02562 * 9 8 7 11 11 C 1.33556 * 121.83234 * 359.65656 * 10 9 8 12 12 C 1.41383 * 119.76775 * 180.31454 * 11 10 9 13 13 H 1.08005 * 120.00169 * 174.11856 * 12 11 10 14 14 C 1.40065 * 120.00021 * 354.12320 * 12 11 10 15 15 N 1.30719 * 119.99864 * 6.35650 * 14 12 11 16 16 Si 1.86800 * 120.00031 * 186.35808 * 14 12 11 17 17 H 1.48498 * 109.47340 * 94.98236 * 16 14 12 18 18 H 1.48501 * 109.46996 * 214.98393 * 16 14 12 19 19 H 1.48505 * 109.47250 * 334.98282 * 16 14 12 20 20 C 1.39341 * 120.83788 * 179.97438 * 7 5 4 21 21 H 1.08002 * 120.00074 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.00453 * 179.97438 * 1 2 3 23 23 H 1.07995 * 119.99412 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47298 * 5.00116 * 3 2 1 25 25 H 1.08993 * 109.47397 * 245.00331 * 3 2 1 26 26 H 0.96997 * 119.99980 * 0.02562 * 4 3 2 27 27 H 1.07997 * 120.30037 * 359.97438 * 8 7 5 28 28 H 1.07996 * 119.42010 * 179.97438 * 9 8 7 29 29 H 0.97004 * 119.99515 * 179.97438 * 15 14 12 30 30 H 1.08001 * 120.58511 * 359.97438 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 3.7782 2.4089 1.3335 6 8 3.7137 3.3580 0.5775 7 6 4.7193 2.4358 2.4773 8 6 4.8077 1.3511 3.3604 9 6 5.6985 1.4082 4.4214 10 7 6.4604 2.4613 4.6135 11 6 6.4196 3.5184 3.7982 12 6 7.2639 4.6259 4.0421 13 1 7.3038 5.4408 3.3343 14 6 8.0486 4.6664 5.2016 15 7 8.0961 3.6288 5.9952 16 14 9.0273 6.2032 5.6138 17 1 8.2420 7.0561 6.5417 18 1 10.3070 5.8164 6.2602 19 1 9.3109 6.9588 4.3672 20 6 5.5387 3.5400 2.7023 21 1 -0.5400 0.9353 0.0004 22 1 -0.5401 -0.9353 -0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0896 25 1 2.6212 1.4026 -0.9313 26 1 3.0450 0.5744 1.7352 27 1 4.1871 0.4791 3.2163 28 1 5.7667 0.5728 5.1024 29 1 8.6398 3.6568 6.7980 30 1 5.5008 4.3956 2.0443 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259005648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = -7.250892 kcal Electronic energy + Delta-G solvation = -15038.348816 eV Core-core repulsion = 12412.059049 eV Total energy + Delta-G solvation = -2626.289766 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.08491 -39.54908 -36.81367 -35.59462 -33.94117 -32.56119 -31.92364 -27.72871 -27.47858 -24.45947 -23.29854 -21.79221 -21.04870 -19.51346 -18.18098 -17.46313 -16.92108 -16.54890 -16.11304 -15.84145 -15.78617 -15.17054 -14.52167 -14.29788 -14.23404 -14.02844 -13.39090 -13.03984 -12.89394 -12.73781 -12.25950 -12.05015 -11.77715 -11.29075 -11.26205 -10.58989 -10.36259 -10.00455 -9.67096 -9.60013 -8.37532 -6.58373 0.29605 0.81221 1.17116 1.40987 1.50537 1.55456 2.12437 2.21804 2.35937 2.81840 3.79854 3.83817 3.91655 4.15200 4.17928 4.49995 4.54815 4.69414 4.74625 4.82013 4.99995 5.12386 5.29056 5.32488 5.48028 5.57425 5.63962 5.77931 5.95515 6.19144 6.51859 6.61136 6.86442 7.15935 8.07530 8.38625 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.058712 B = 0.005144 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.787892 B = 5442.211248 C = 5854.748410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.183 4.183 3 C 0.143 3.857 4 N -0.706 5.706 5 C 0.563 3.437 6 O -0.584 6.584 7 C -0.082 4.082 8 C -0.273 4.273 9 C 0.109 3.891 10 N -0.507 5.507 11 C 0.222 3.778 12 C -0.465 4.465 13 H 0.086 0.914 14 C 0.026 3.974 15 N -0.749 5.749 16 Si 0.989 3.011 17 H -0.263 1.263 18 H -0.263 1.263 19 H -0.258 1.258 20 C -0.237 4.237 21 H 0.099 0.901 22 H 0.126 0.874 23 H 0.132 0.868 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.415 0.585 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.283 0.717 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 -7.492 -4.707 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.201 4.201 3 C 0.020 3.980 4 N -0.359 5.359 5 C 0.351 3.649 6 O -0.465 6.465 7 C -0.091 4.091 8 C -0.296 4.296 9 C -0.055 4.055 10 N -0.221 5.221 11 C 0.098 3.902 12 C -0.496 4.496 13 H 0.104 0.896 14 C -0.196 4.196 15 N -0.370 5.370 16 Si 0.809 3.191 17 H -0.187 1.187 18 H -0.187 1.187 19 H -0.182 1.182 20 C -0.262 4.262 21 H 0.117 0.883 22 H 0.144 0.856 23 H 0.150 0.850 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.253 0.747 27 H 0.164 0.836 28 H 0.173 0.827 29 H 0.094 0.906 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.425 -6.896 -4.381 11.736 hybrid contribution -0.089 0.378 -0.332 0.511 sum -8.514 -6.517 -4.713 11.712 Atomic orbital electron populations 1.24189 0.95354 1.03435 0.96264 1.22923 0.96524 0.97005 1.03651 1.20525 0.91389 0.97235 0.88835 1.45775 1.39801 1.19174 1.31105 1.18580 0.80015 0.82285 0.83983 1.90659 1.69931 1.37294 1.48607 1.19928 0.97185 0.96247 0.95772 1.21768 1.07605 0.99933 1.00254 1.23120 0.91018 0.96330 0.95068 1.68598 1.23854 1.00591 1.29066 1.18914 0.91171 0.92290 0.87869 1.20023 1.20197 1.03237 1.06175 0.89624 1.26966 0.96882 1.00730 0.95030 1.70175 1.28119 1.29610 1.09113 0.85098 0.77637 0.77011 0.79392 1.18733 1.18684 1.18166 1.21959 1.02436 0.99422 1.02335 0.88254 0.85606 0.85029 0.91921 0.91476 0.74663 0.83564 0.82678 0.90614 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 14.32 67.78 0.97 -1.12 16 2 C -0.18 -3.02 9.63 25.65 0.25 -2.77 16 3 C 0.14 3.48 6.11 85.63 0.52 4.01 16 4 N -0.71 -20.76 5.51 -469.44 -2.58 -23.34 16 5 C 0.56 23.07 7.80 86.87 0.68 23.75 16 6 O -0.58 -27.85 16.43 -3.76 -0.06 -27.91 16 7 C -0.08 -3.75 5.90 -19.92 -0.12 -3.86 16 8 C -0.27 -10.90 9.63 22.83 0.22 -10.68 16 9 C 0.11 4.92 11.17 84.86 0.95 5.87 16 10 N -0.51 -27.82 7.86 -189.29 -1.49 -29.30 16 11 C 0.22 12.61 6.55 40.24 0.26 12.87 16 12 C -0.47 -25.95 9.13 23.49 0.21 -25.73 16 13 H 0.09 4.57 7.86 -2.91 -0.02 4.55 16 14 C 0.03 1.35 5.49 85.30 0.47 1.82 16 15 N -0.75 -39.81 11.49 21.84 0.25 -39.56 16 16 Si 0.99 38.26 29.56 68.60 2.03 40.29 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 20 C -0.24 -12.63 9.40 23.12 0.22 -12.41 16 21 H 0.10 1.36 7.84 -2.91 -0.02 1.33 16 22 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 23 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 24 H 0.06 1.62 7.79 -2.38 -0.02 1.60 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.42 9.90 6.59 -92.71 -0.61 9.29 16 27 H 0.15 4.30 6.52 -2.91 -0.02 4.28 16 28 H 0.16 5.83 8.06 -2.91 -0.02 5.80 16 29 H 0.28 13.43 8.29 -92.71 -0.77 12.66 16 30 H 0.10 5.36 7.73 -2.91 -0.02 5.34 16 Total: -1.00 -68.97 272.25 3.32 -65.64 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.55 Total: 22.44 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.63 Total: -8.27 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -3.82 Total: -92.20 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.06 Total: -27.91 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -68.97 3.32 -65.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259005648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.393 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds