Wall clock time and date at job start Mon Mar 30 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 O 1.42903 * 109.47386 * 295.00166 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.34281 * 126.53019 * 95.01710 * 13 10 9 15 15 N 1.36959 * 109.94477 * 179.97438 * 14 13 10 16 16 H 0.96994 * 125.04063 * 179.97438 * 15 14 13 17 17 C 1.37063 * 109.91703 * 0.02562 * 15 14 13 18 18 C 1.39336 * 134.66324 * 180.02562 * 17 15 14 19 19 C 1.36712 * 118.97624 * 179.97438 * 18 17 15 20 20 N 1.32297 * 121.66499 * 0.03180 * 19 18 17 21 21 C 1.31720 * 122.22894 * 359.96567 * 20 19 18 22 22 C 1.39353 * 119.97863 * 359.74904 * 21 20 19 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 0.96705 * 113.99520 * 300.00083 * 12 10 9 27 27 H 1.08000 * 125.02447 * 359.97438 * 14 13 10 28 28 H 1.07998 * 120.51163 * 0.02562 * 18 17 15 29 29 H 1.07996 * 119.16508 * 179.97438 * 19 18 17 30 30 H 1.08000 * 120.00705 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 1 3.5870 -3.1755 -0.8422 12 8 3.6428 -3.2759 1.2207 13 6 5.5233 -2.6387 -0.1233 14 6 6.4080 -2.7030 0.8848 15 7 7.6843 -2.6824 0.3884 16 1 8.4913 -2.7185 0.9253 17 6 7.6520 -2.6020 -0.9795 18 6 8.6197 -2.5502 -1.9806 19 6 8.2192 -2.4714 -3.2854 20 7 6.9392 -2.4427 -3.6184 21 6 5.9781 -2.4887 -2.7189 22 6 6.2954 -2.5758 -1.3647 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 3.9948 -2.8489 2.0138 27 1 6.1510 -2.7623 1.9321 28 1 9.6699 -2.5727 -1.7298 29 1 8.9667 -2.4307 -4.0638 30 1 4.9445 -2.4634 -3.0310 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259651935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:39 Heat of formation + Delta-G solvation = 13.051299 kcal Electronic energy + Delta-G solvation = -15584.203583 eV Core-core repulsion = 12958.794186 eV Total energy + Delta-G solvation = -2625.409397 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.47943 -38.06578 -36.63278 -32.79575 -32.19427 -30.69381 -29.85132 -28.71639 -24.82200 -23.55331 -22.38727 -21.22228 -19.39814 -18.40076 -16.75740 -16.58495 -15.61931 -15.53288 -14.74795 -14.48054 -14.31386 -14.00888 -13.78265 -13.34509 -12.65881 -12.58490 -12.33857 -11.66107 -11.31815 -10.94517 -10.87382 -10.45993 -9.82598 -9.67030 -9.39627 -9.17546 -9.13059 -8.67399 -8.52885 -7.63708 -6.01580 -3.99215 1.04584 1.65599 2.74445 3.04737 3.31127 3.38755 3.40825 4.07242 4.45887 4.60707 4.70752 4.91413 5.01861 5.13050 5.30010 5.35491 5.52125 5.62272 5.73348 5.91880 6.06763 6.40110 6.43649 6.65736 6.73527 7.00430 7.06926 7.29349 7.47470 7.76064 8.23336 8.36633 8.56295 9.07713 9.60055 11.11826 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.028916 B = 0.007541 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.092822 B = 3711.929639 C = 4080.434575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.079 0.921 9 C -0.033 4.033 10 C 0.186 3.814 11 H 0.102 0.898 12 O -0.549 6.549 13 C -0.159 4.159 14 C 0.037 3.963 15 N -0.589 5.589 16 H 0.415 0.585 17 C 0.125 3.875 18 C -0.188 4.188 19 C 0.096 3.904 20 N -0.509 5.509 21 C 0.170 3.830 22 C -0.154 4.154 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.362 0.638 27 H 0.173 0.827 28 H 0.126 0.874 29 H 0.152 0.848 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.968 -4.478 0.402 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.097 0.903 9 C -0.071 4.071 10 C 0.126 3.874 11 H 0.119 0.881 12 O -0.353 6.353 13 C -0.167 4.167 14 C -0.087 4.087 15 N -0.192 5.192 16 H 0.252 0.748 17 C 0.010 3.990 18 C -0.212 4.212 19 C -0.054 4.054 20 N -0.220 5.220 21 C 0.005 3.995 22 C -0.161 4.161 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.208 0.792 27 H 0.190 0.810 28 H 0.144 0.856 29 H 0.169 0.831 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 17.430 -4.715 -0.808 18.075 hybrid contribution 1.451 1.384 1.607 2.569 sum 18.881 -3.331 0.799 19.189 Atomic orbital electron populations 1.69909 1.06205 1.26742 1.51201 1.24993 0.94681 0.98871 0.94796 0.86861 0.80205 0.84072 0.78583 1.20244 1.21422 1.19321 1.21048 0.88825 0.94728 1.50363 0.90331 1.20209 0.97976 0.91775 0.97118 1.20284 0.84054 0.95771 0.87248 0.88064 1.86589 1.77070 1.56353 1.15278 1.21591 0.97632 1.07040 0.90413 1.21553 0.82016 1.05969 0.99169 1.41577 1.08135 1.65005 1.04486 0.74846 1.18338 0.95478 1.00990 0.84238 1.20672 0.98350 1.09805 0.92325 1.22012 0.93097 0.96447 0.93847 1.67737 1.00706 1.15793 1.37728 1.22483 0.99090 0.91090 0.86804 1.20079 0.92502 1.08487 0.95068 0.92769 0.96047 0.96431 0.79217 0.80998 0.85627 0.83079 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -14.39 9.43 -34.44 -0.32 -14.72 16 8 H 0.08 2.42 7.99 -52.49 -0.42 2.00 16 9 C -0.03 -0.77 3.71 -27.88 -0.10 -0.87 16 10 C 0.19 3.64 3.44 -27.89 -0.10 3.55 16 11 H 0.10 2.07 8.14 -51.92 -0.42 1.64 16 12 O -0.55 -10.48 12.88 -35.23 -0.45 -10.94 16 13 C -0.16 -2.65 5.45 -102.77 -0.56 -3.21 16 14 C 0.04 0.49 11.16 -16.66 -0.19 0.30 16 15 N -0.59 -6.86 6.05 -10.60 -0.06 -6.92 16 16 H 0.41 3.23 8.96 -40.82 -0.37 2.86 16 17 C 0.13 1.76 7.35 -84.05 -0.62 1.15 16 18 C -0.19 -2.28 10.09 -39.73 -0.40 -2.68 16 19 C 0.10 1.24 11.09 -17.90 -0.20 1.04 16 20 N -0.51 -8.06 10.34 -13.27 -0.14 -8.20 16 21 C 0.17 2.80 11.28 -17.18 -0.19 2.60 16 22 C -0.15 -2.55 6.40 -105.16 -0.67 -3.22 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 26 H 0.36 5.47 8.10 45.56 0.37 5.84 16 27 H 0.17 1.73 7.40 -52.49 -0.39 1.34 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -34.05 264.15 -6.45 -40.50 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -2.43 Total: 5.77 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.45 Total: -14.20 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.57 Total: -42.15 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.45 Total: -10.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.05 -6.45 -40.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.551 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds