Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 O 1.42903 * 109.47386 * 295.00166 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.34281 * 126.53019 * 95.01710 * 13 10 9 15 15 N 1.36959 * 109.94477 * 179.97438 * 14 13 10 16 16 H 0.96994 * 125.04063 * 179.97438 * 15 14 13 17 17 C 1.37063 * 109.91703 * 0.02562 * 15 14 13 18 18 C 1.39336 * 134.66324 * 180.02562 * 17 15 14 19 19 C 1.36712 * 118.97624 * 179.97438 * 18 17 15 20 20 N 1.32297 * 121.66499 * 0.03180 * 19 18 17 21 21 C 1.31720 * 122.22894 * 359.96567 * 20 19 18 22 22 C 1.39353 * 119.97863 * 359.74904 * 21 20 19 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 0.96705 * 113.99520 * 300.00083 * 12 10 9 27 27 H 1.08000 * 125.02447 * 359.97438 * 14 13 10 28 28 H 1.07998 * 120.51163 * 0.02562 * 18 17 15 29 29 H 1.07996 * 119.16508 * 179.97438 * 19 18 17 30 30 H 1.08000 * 120.00705 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 1 3.5870 -3.1755 -0.8422 12 8 3.6428 -3.2759 1.2207 13 6 5.5233 -2.6387 -0.1233 14 6 6.4080 -2.7030 0.8848 15 7 7.6843 -2.6824 0.3884 16 1 8.4913 -2.7185 0.9253 17 6 7.6520 -2.6020 -0.9795 18 6 8.6197 -2.5502 -1.9806 19 6 8.2192 -2.4714 -3.2854 20 7 6.9392 -2.4427 -3.6184 21 6 5.9781 -2.4887 -2.7189 22 6 6.2954 -2.5758 -1.3647 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 3.9948 -2.8489 2.0138 27 1 6.1510 -2.7623 1.9321 28 1 9.6699 -2.5727 -1.7298 29 1 8.9667 -2.4307 -4.0638 30 1 4.9445 -2.4634 -3.0310 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259651935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = -13.343055 kcal Electronic energy + Delta-G solvation = -15585.348128 eV Core-core repulsion = 12958.794186 eV Total energy + Delta-G solvation = -2626.553942 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.54606 -39.20068 -38.09147 -34.89899 -33.41628 -32.00759 -31.30285 -30.01119 -26.56678 -24.62102 -23.42877 -23.04754 -20.69469 -19.52085 -18.71366 -17.74186 -17.13678 -16.74061 -16.14876 -15.75767 -15.56956 -15.51946 -14.99564 -14.94303 -14.34234 -13.74242 -13.69436 -13.32569 -12.79257 -12.71694 -12.45281 -12.24672 -11.75461 -11.28066 -10.93818 -10.75796 -10.58683 -10.48460 -9.75722 -8.73982 -8.25732 -6.28690 -0.01759 0.57795 1.35490 1.36458 1.47468 1.62280 2.10146 2.36445 2.97797 3.08393 3.55917 3.69332 3.74806 3.92169 4.02211 4.25963 4.40945 4.57969 4.59876 4.74463 4.78418 4.90432 5.13138 5.17054 5.44752 5.53278 5.64971 5.68383 5.96467 6.32254 6.62603 6.79530 7.04784 7.16379 7.34412 8.91467 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.028916 B = 0.007541 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.092822 B = 3711.929639 C = 4080.434575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.518 4.518 8 H 0.032 0.968 9 C -0.025 4.025 10 C 0.201 3.799 11 H 0.074 0.926 12 O -0.563 6.563 13 C -0.205 4.205 14 C 0.072 3.928 15 N -0.569 5.569 16 H 0.438 0.562 17 C 0.116 3.884 18 C -0.170 4.170 19 C 0.081 3.919 20 N -0.529 5.529 21 C 0.138 3.862 22 C -0.178 4.178 23 H 0.265 0.735 24 H 0.018 0.982 25 H 0.029 0.971 26 H 0.381 0.619 27 H 0.210 0.790 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.937 -3.728 1.600 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.556 4.556 8 H 0.051 0.949 9 C -0.063 4.063 10 C 0.141 3.859 11 H 0.092 0.908 12 O -0.369 6.369 13 C -0.213 4.213 14 C -0.054 4.054 15 N -0.174 5.174 16 H 0.279 0.721 17 C 0.000 4.000 18 C -0.193 4.193 19 C -0.068 4.068 20 N -0.239 5.239 21 C -0.026 4.026 22 C -0.185 4.185 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.229 0.771 27 H 0.226 0.774 28 H 0.186 0.814 29 H 0.202 0.798 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.452 -3.979 0.409 21.822 hybrid contribution 0.245 1.035 1.241 1.635 sum 21.697 -2.944 1.650 21.958 Atomic orbital electron populations 1.70073 1.08259 1.27952 1.53005 1.25952 0.95529 1.03184 0.94469 0.85709 0.79528 0.78719 0.78927 1.19850 1.20904 1.16922 1.21337 0.91671 0.93003 1.49553 0.94933 1.20103 0.94328 0.94699 0.97160 1.19742 0.86531 0.92869 0.86747 0.90790 1.86546 1.77776 1.56632 1.15990 1.21152 0.95989 1.12168 0.92023 1.22023 0.81885 1.01528 0.99948 1.41536 1.08570 1.63474 1.03798 0.72109 1.18573 0.94722 1.01149 0.85541 1.21086 1.00027 1.06906 0.91246 1.22638 0.92531 0.96073 0.95575 1.67694 1.02020 1.16069 1.38143 1.22379 0.99036 0.93562 0.87602 1.20242 0.94201 1.09146 0.94912 0.92606 0.96368 0.95234 0.77113 0.77366 0.81386 0.79762 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 2 C 0.01 0.30 5.47 84.66 0.46 0.76 16 3 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.52 -30.20 9.43 25.60 0.24 -29.95 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 9 C -0.03 -1.17 3.71 29.85 0.11 -1.06 16 10 C 0.20 8.01 3.44 29.85 0.10 8.12 16 11 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 12 O -0.56 -21.42 12.88 -148.98 -1.92 -23.34 16 13 C -0.21 -6.62 5.45 -18.66 -0.10 -6.72 16 14 C 0.07 1.65 11.16 82.99 0.93 2.58 16 15 N -0.57 -10.70 6.05 -187.46 -1.13 -11.84 16 16 H 0.44 4.37 8.96 -92.71 -0.83 3.54 16 17 C 0.12 2.90 7.35 39.28 0.29 3.19 16 18 C -0.17 -3.44 10.09 22.18 0.22 -3.22 16 19 C 0.08 1.90 11.09 84.27 0.93 2.83 16 20 N -0.53 -16.54 10.34 -195.90 -2.03 -18.57 16 21 C 0.14 4.69 11.28 84.98 0.96 5.65 16 22 C -0.18 -5.76 6.40 -20.22 -0.13 -5.89 16 23 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 24 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 25 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 26 H 0.38 10.82 8.10 -74.05 -0.60 10.22 16 27 H 0.21 3.12 7.40 -2.91 -0.02 3.09 16 28 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -77.19 264.15 0.82 -76.38 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.31 Total: 14.75 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.02 Total: -23.71 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -2.86 Total: -90.83 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -1.92 Total: -23.34 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -77.19 0.82 -76.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.035 kcal (2) G-P(sol) polarization free energy of solvation -77.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds