Wall clock time and date at job start Mon Mar 30 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.41304 * 121.29211 * 2 1 4 4 C 1.40484 * 116.64360 * 221.58031 * 3 2 1 5 5 C 1.38820 * 122.40590 * 141.44199 * 4 3 2 6 6 H 1.08009 * 119.99710 * 180.02562 * 5 4 3 7 7 C 1.40331 * 120.00380 * 0.02850 * 5 4 3 8 8 N 1.30653 * 119.99625 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00334 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47163 * 59.99862 * 9 7 5 11 11 H 1.48502 * 109.47123 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46880 * 299.99365 * 9 7 5 13 13 C 1.41435 * 115.18811 * 321.46432 * 4 3 2 14 14 C 1.37908 * 121.30515 * 174.48254 * 13 4 3 15 15 C 1.38127 * 120.54321 * 187.08831 * 14 13 4 16 16 C 1.40732 * 120.34271 * 2.79134 * 15 14 13 17 17 C 1.33589 * 121.63012 * 353.84671 * 16 15 14 18 18 C 1.49212 * 122.63639 * 359.04349 * 17 16 15 19 19 H 1.09005 * 107.81187 * 250.61484 * 18 17 16 20 20 C 1.36227 * 121.28570 * 180.02562 * 2 1 3 21 21 O 1.21276 * 121.51382 * 1.49511 * 20 2 1 22 22 H 1.08998 * 109.46953 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47487 * 120.00020 * 1 2 3 24 24 H 1.09001 * 109.46699 * 240.00024 * 1 2 3 25 25 H 0.97003 * 121.67497 * 41.56404 * 3 2 1 26 26 H 0.97003 * 119.99828 * 180.02562 * 8 7 5 27 27 H 1.08005 * 119.72507 * 7.02965 * 14 13 4 28 28 H 1.08002 * 119.82507 * 182.85389 * 15 14 13 29 29 H 1.07998 * 119.18452 * 173.86905 * 16 15 14 30 30 H 1.07997 * 118.67471 * 179.01748 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1989 1.2075 0.0000 4 6 3.3288 1.2580 -0.8333 5 6 3.6756 2.3962 -1.5484 6 1 4.5530 2.3918 -2.1782 7 6 2.8863 3.5526 -1.4528 8 7 1.8247 3.5577 -0.6912 9 14 3.3525 5.0840 -2.4155 10 1 3.3589 4.7730 -3.8675 11 1 2.3646 6.1590 -2.1443 12 1 4.7043 5.5371 -2.0002 13 6 4.0873 0.0656 -0.8919 14 6 5.1553 -0.0625 -1.7549 15 6 5.7940 -1.2779 -1.9057 16 6 5.3257 -2.4166 -1.2240 17 6 4.3391 -2.3394 -0.3266 18 6 3.6784 -1.0511 0.0342 19 1 3.9843 -0.7918 1.0478 20 6 2.1724 -1.1642 -0.0005 21 8 1.6184 -2.2426 -0.0280 22 1 -0.3633 1.0277 0.0005 23 1 -0.3634 -0.5138 -0.8899 24 1 -0.3633 -0.5138 0.8900 25 1 1.9357 1.9636 0.5477 26 1 1.2788 4.3569 -0.6254 27 1 5.4946 0.7944 -2.3181 28 1 6.6578 -1.3546 -2.5494 29 1 5.7753 -3.3764 -1.4311 30 1 4.0061 -3.2460 0.1567 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059413.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:25 Heat of formation + Delta-G solvation = 24.515225 kcal Electronic energy + Delta-G solvation = -16234.498364 eV Core-core repulsion = 13609.586080 eV Total energy + Delta-G solvation = -2624.912284 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.20341 -38.51529 -37.58114 -35.99587 -33.48510 -31.74069 -30.81494 -29.31687 -27.30683 -24.91310 -23.65336 -21.65075 -20.25306 -19.32524 -18.73948 -17.54359 -17.31243 -16.97300 -16.00456 -15.82023 -15.33399 -14.97355 -14.36538 -14.21523 -14.00152 -13.57368 -13.37071 -13.28335 -12.96177 -12.77906 -12.32290 -12.03569 -12.01411 -11.34431 -11.20439 -11.06857 -10.68209 -10.10535 -9.30568 -8.92702 -8.05246 -6.41240 0.31431 1.32079 1.41580 1.42963 1.56070 1.62410 1.95899 2.10042 2.67083 3.08657 3.37115 4.29124 4.31104 4.40579 4.45455 4.56038 4.68209 4.73540 4.87113 4.93292 5.15308 5.25650 5.34754 5.49742 5.55371 5.82979 5.98237 6.20760 6.33278 6.44370 6.53441 6.95350 6.98754 7.11344 7.59818 7.76152 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.010861 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.150497 B = 2577.352201 C = 3551.696111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.429 5.429 3 N -0.528 5.528 4 C 0.331 3.669 5 C -0.386 4.386 6 H 0.124 0.876 7 C 0.040 3.960 8 N -0.768 5.768 9 Si 1.009 2.991 10 H -0.259 1.259 11 H -0.259 1.259 12 H -0.250 1.250 13 C -0.412 4.412 14 C 0.031 3.969 15 C -0.385 4.385 16 C -0.048 4.048 17 C -0.284 4.284 18 C 0.048 3.952 19 H 0.032 0.968 20 C 0.507 3.493 21 O -0.582 6.582 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.434 0.566 26 H 0.317 0.683 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 8.395 -0.464 8.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.250 5.250 3 N -0.269 5.269 4 C 0.224 3.776 5 C -0.415 4.415 6 H 0.141 0.859 7 C -0.185 4.185 8 N -0.390 5.390 9 Si 0.827 3.173 10 H -0.183 1.183 11 H -0.182 1.182 12 H -0.174 1.174 13 C -0.417 4.417 14 C 0.012 3.988 15 C -0.404 4.404 16 C -0.066 4.066 17 C -0.303 4.303 18 C 0.027 3.973 19 H 0.050 0.950 20 C 0.298 3.702 21 O -0.460 6.460 22 H 0.119 0.881 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.286 0.714 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.869 7.834 -0.304 8.348 hybrid contribution -0.225 0.341 0.086 0.418 sum -3.094 8.175 -0.218 8.743 Atomic orbital electron populations 1.21840 0.75933 1.04051 1.02105 1.47964 1.04445 0.98750 1.73847 1.44862 1.27787 1.05163 1.49109 1.18823 0.82339 0.93091 0.83372 1.20265 1.09884 0.95008 1.16390 0.85853 1.27340 0.92179 1.03952 0.95074 1.69026 1.10100 1.32444 1.27478 0.84755 0.80122 0.73815 0.78568 1.18285 1.18235 1.17400 1.18869 1.09554 0.96560 1.16669 1.20306 0.91368 0.95651 0.91469 1.20384 1.09313 0.93977 1.16697 1.20060 0.95203 0.97463 0.93917 1.21920 1.04149 0.96052 1.08174 1.17655 0.87673 0.94459 0.97498 0.95027 1.22562 0.91835 0.81983 0.73838 1.90514 1.74243 1.27881 1.53394 0.88088 0.92577 0.90930 0.71367 0.86957 0.87350 0.88524 0.88073 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.52 10.65 127.77 1.36 4.89 16 2 N -0.43 -18.96 3.81 -482.10 -1.84 -20.80 16 3 N -0.53 -22.80 5.44 -49.35 -0.27 -23.07 16 4 C 0.33 15.28 6.51 38.68 0.25 15.53 16 5 C -0.39 -15.84 8.78 22.92 0.20 -15.64 16 6 H 0.12 4.76 6.20 -2.91 -0.02 4.74 16 7 C 0.04 1.39 5.50 85.38 0.47 1.86 16 8 N -0.77 -26.77 10.50 21.90 0.23 -26.54 16 9 Si 1.01 26.34 29.56 68.60 2.03 28.37 16 10 H -0.26 -6.97 7.11 99.48 0.71 -6.27 16 11 H -0.26 -6.25 7.11 99.48 0.71 -5.54 16 12 H -0.25 -6.46 7.11 99.48 0.71 -5.75 16 13 C -0.41 -20.70 5.55 -19.15 -0.11 -20.81 16 14 C 0.03 1.50 9.37 22.16 0.21 1.70 16 15 C -0.38 -18.35 10.12 22.85 0.23 -18.12 16 16 C -0.05 -2.33 9.86 21.82 0.22 -2.12 16 17 C -0.28 -14.60 9.01 24.17 0.22 -14.38 16 18 C 0.05 2.47 2.71 -13.37 -0.04 2.43 16 19 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 20 C 0.51 25.87 7.37 87.54 0.65 26.51 16 21 O -0.58 -31.68 16.56 -3.02 -0.05 -31.73 16 22 H 0.10 2.97 8.12 -2.39 -0.02 2.95 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.43 17.31 6.75 -212.53 -1.43 15.87 16 26 H 0.32 9.45 8.29 -92.71 -0.77 8.68 16 27 H 0.11 4.63 6.36 -2.91 -0.02 4.61 16 28 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.08 4.08 7.97 -2.91 -0.02 4.05 16 Total: -1.00 -57.78 256.84 3.49 -54.28 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.27 Total: 37.64 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.66 Total: -18.15 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -1.88 Total: -70.40 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.05 Total: -31.73 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: 2.03 Total: 28.37 kcal Total: -57.78 3.49 -54.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059413.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.796 kcal (2) G-P(sol) polarization free energy of solvation -57.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds