Wall clock time and date at job start Mon Mar 30 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47046 * 274.99302 * 3 2 1 5 5 H 1.48497 * 109.46983 * 34.99121 * 3 2 1 6 6 H 1.48497 * 109.47116 * 154.99355 * 3 2 1 7 7 C 1.39934 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99982 * 168.97009 * 7 2 1 9 9 C 1.41405 * 120.00054 * 348.97202 * 7 2 1 10 10 C 1.40785 * 120.20849 * 331.47664 * 9 7 2 11 11 C 1.37643 * 119.88743 * 180.02562 * 10 9 7 12 12 C 1.38533 * 120.32467 * 0.02562 * 11 10 9 13 13 C 1.39270 * 120.42606 * 359.97438 * 12 11 10 14 14 N 1.39885 * 119.94904 * 179.97438 * 13 12 11 15 15 C 1.37502 * 120.00073 * 148.14886 * 14 13 12 16 16 N 1.29742 * 123.08577 * 174.84048 * 15 14 13 17 17 C 1.47587 * 108.42219 * 180.40024 * 16 15 14 18 18 C 1.54815 * 101.98625 * 15.05797 * 17 16 15 19 19 O 1.34800 * 123.08082 * 354.55024 * 15 14 13 20 20 C 1.38293 * 120.09843 * 0.27715 * 13 12 11 21 21 H 0.97003 * 120.00137 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.05356 * 0.02615 * 10 9 7 23 23 H 1.07996 * 119.84283 * 179.97438 * 11 10 9 24 24 H 1.08001 * 119.79037 * 180.02562 * 12 11 10 25 25 H 0.97009 * 120.00032 * 328.42214 * 14 13 12 26 26 H 1.09001 * 110.92975 * 133.22427 * 17 16 15 27 27 H 1.09005 * 110.93222 * 256.88382 * 17 16 15 28 28 H 1.08996 * 111.04842 * 94.53781 * 18 17 16 29 29 H 1.08999 * 111.04771 * 218.49719 * 18 17 16 30 30 H 1.07999 * 120.15810 * 179.72547 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4965 2.6199 0.8029 6 1 3.5886 1.4119 0.5918 7 6 2.0079 -1.2119 0.0005 8 1 3.0729 -1.2206 -0.1784 9 6 1.3204 -2.4251 0.2353 10 6 0.1551 -2.4375 1.0252 11 6 -0.5085 -3.6223 1.2499 12 6 -0.0352 -4.8038 0.7029 13 6 1.1163 -4.8068 -0.0804 14 7 1.5857 -6.0056 -0.6273 15 6 2.2370 -6.0004 -1.8383 16 7 2.7813 -7.0590 -2.3544 17 6 3.3943 -6.6867 -3.6443 18 6 3.4208 -5.1415 -3.5535 19 8 2.3637 -4.8960 -2.6008 20 6 1.7998 -3.6273 -0.3132 21 1 -0.4850 0.8401 0.0004 22 1 -0.2175 -1.5190 1.4540 23 1 -1.4022 -3.6310 1.8562 24 1 -0.5630 -5.7284 0.8845 25 1 1.4482 -6.8413 -0.1542 26 1 4.4039 -7.0892 -3.7262 27 1 2.7760 -7.0171 -4.4790 28 1 4.3811 -4.7878 -3.1782 29 1 3.1884 -4.6886 -4.5173 30 1 2.6953 -3.6293 -0.9169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:47 Heat of formation + Delta-G solvation = 18.862570 kcal Electronic energy + Delta-G solvation = -15633.374578 eV Core-core repulsion = 13008.217177 eV Total energy + Delta-G solvation = -2625.157402 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77922 -37.93372 -35.21974 -33.39963 -32.93972 -29.93224 -29.37526 -27.30015 -25.33679 -22.95970 -21.73226 -20.77744 -19.99744 -17.81524 -16.81262 -16.46784 -15.62421 -15.15001 -15.05089 -14.60506 -13.70113 -13.41735 -13.04645 -12.88686 -12.45451 -12.20048 -11.68466 -11.63456 -11.32848 -11.12701 -10.67121 -10.56684 -10.07855 -9.94730 -9.75812 -9.36636 -9.18295 -8.36662 -7.50642 -6.82675 -6.71411 -4.42291 2.44162 2.75035 3.05261 3.06560 3.10297 3.13948 3.25801 3.92344 4.09072 4.61703 4.82895 5.10575 5.39774 5.59226 5.63448 5.71805 5.89449 6.19590 6.32863 6.35718 6.89580 6.92395 6.98942 7.04141 7.21235 7.45909 7.64537 7.91288 7.97849 8.08149 8.18894 8.52586 8.64922 8.87359 8.91247 10.20590 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.007817 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.670954 B = 3581.023212 C = 4421.985497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.125 3.875 10 C -0.167 4.167 11 C -0.089 4.089 12 C -0.257 4.257 13 C 0.158 3.842 14 N -0.628 5.628 15 C 0.546 3.454 16 N -0.634 5.634 17 C 0.018 3.982 18 C 0.024 3.976 19 O -0.330 6.330 20 C -0.228 4.228 21 H 0.280 0.720 22 H 0.122 0.878 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.423 0.577 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -4.801 -3.195 6.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.122 3.878 10 C -0.187 4.187 11 C -0.108 4.108 12 C -0.279 4.279 13 C 0.066 3.934 14 N -0.265 5.265 15 C 0.235 3.765 16 N -0.387 5.387 17 C -0.113 4.113 18 C -0.054 4.054 19 O -0.232 6.232 20 C -0.250 4.250 21 H 0.091 0.909 22 H 0.140 0.860 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.262 0.738 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.347 -5.097 -3.156 6.866 hybrid contribution 0.292 1.104 -0.385 1.205 sum 3.639 -3.993 -3.541 6.459 Atomic orbital electron populations 1.69796 1.07432 1.29046 1.36259 1.25882 0.94827 1.01212 0.92350 0.86263 0.80571 0.80666 0.79007 1.19617 1.20046 1.18505 1.19539 0.95953 0.90392 1.43042 0.90534 1.17447 0.91238 0.91458 0.87654 1.21418 0.98868 0.96694 1.01695 1.20500 0.98344 0.92715 0.99282 1.20040 0.98877 0.97711 1.11269 1.17484 0.94354 0.84043 0.97553 1.41143 1.59321 1.10246 1.15767 1.21519 0.87235 0.82788 0.84928 1.75159 1.28888 1.23225 1.11458 1.23657 1.01002 0.92336 0.94280 1.24548 0.90323 0.97727 0.92766 1.87213 1.52916 1.38104 1.44936 1.20900 1.03344 0.92154 1.08614 0.90930 0.86002 0.88765 0.88930 0.73774 0.89392 0.90722 0.90077 0.87453 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.52 10.84 55.55 0.60 -19.92 16 2 C 0.07 1.85 5.25 -17.35 -0.09 1.76 16 3 Si 0.91 18.56 29.57 -169.99 -5.03 13.54 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.12 9.06 -37.74 -0.34 -12.46 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 9 C 0.13 3.32 5.55 -106.85 -0.59 2.72 16 10 C -0.17 -4.26 8.66 -38.84 -0.34 -4.59 16 11 C -0.09 -2.04 10.02 -39.69 -0.40 -2.43 16 12 C -0.26 -5.59 9.96 -39.09 -0.39 -5.97 16 13 C 0.16 3.54 6.36 -83.78 -0.53 3.01 16 14 N -0.63 -12.10 5.45 -11.99 -0.07 -12.17 16 15 C 0.55 10.58 8.19 -88.70 -0.73 9.86 16 16 N -0.63 -11.35 11.81 -60.91 -0.72 -12.06 16 17 C 0.02 0.26 8.13 -2.49 -0.02 0.24 16 18 C 0.02 0.34 8.18 38.11 0.31 0.65 16 19 O -0.33 -6.52 8.42 -16.14 -0.14 -6.65 16 20 C -0.23 -5.64 8.45 -38.68 -0.33 -5.97 16 21 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 22 H 0.12 3.20 6.20 -52.49 -0.33 2.87 16 23 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 24 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 25 H 0.42 6.96 8.93 -40.82 -0.36 6.60 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 2.54 6.29 -52.49 -0.33 2.21 16 LS Contribution 261.49 15.07 3.94 3.94 Total: -1.00 -28.75 261.49 -7.95 -36.71 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -3.10 Total: 9.82 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -3.44 Total: -13.20 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.18 Total: -44.15 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.14 Total: -6.65 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.75 -7.95 -36.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.570 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds