Wall clock time and date at job start Mon Mar 30 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86806 * 119.99667 * 2 1 4 4 H 1.48500 * 109.47207 * 270.78118 * 3 2 1 5 5 H 1.48495 * 109.47113 * 30.78916 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.78494 * 3 2 1 7 7 C 1.39937 * 120.00632 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99235 * 340.19531 * 7 2 1 9 9 C 1.41403 * 120.00480 * 160.19281 * 7 2 1 10 10 C 1.40777 * 120.20898 * 332.29989 * 9 7 2 11 11 C 1.37642 * 119.88490 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.32011 * 359.97438 * 11 10 9 13 13 C 1.39245 * 120.43307 * 359.97438 * 12 11 10 14 14 N 1.39932 * 119.95100 * 180.02562 * 13 12 11 15 15 N 1.36338 * 123.52907 * 227.08441 * 14 13 12 16 16 C 1.48141 * 107.84894 * 161.46549 * 15 14 13 17 17 C 1.54790 * 101.87856 * 26.32111 * 16 15 14 18 18 C 1.34595 * 123.52496 * 46.79459 * 14 13 12 19 19 O 1.21286 * 126.03942 * 1.59251 * 18 14 13 20 20 C 1.38285 * 120.10370 * 0.02562 * 13 12 11 21 21 H 0.96999 * 120.00673 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.05794 * 0.02562 * 10 9 7 23 23 H 1.07993 * 119.83807 * 179.97438 * 11 10 9 24 24 H 1.08003 * 119.78388 * 180.02562 * 12 11 10 25 25 H 1.00897 * 110.99988 * 283.26032 * 15 14 13 26 26 H 1.09004 * 110.94595 * 144.47123 * 16 15 14 27 27 H 1.08998 * 110.94762 * 268.17693 * 16 15 14 28 28 H 1.09004 * 110.84815 * 94.18428 * 17 16 15 29 29 H 1.08995 * 110.85528 * 217.61235 * 17 16 15 30 30 H 1.07999 * 120.16191 * 179.72781 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4731 2.0561 -1.3999 5 1 1.4480 2.6478 0.7166 6 1 3.5479 1.4355 0.6834 7 6 2.0080 -1.2118 -0.0005 8 1 1.5159 -2.1196 0.3160 9 6 3.3593 -1.2478 -0.4155 10 6 3.8426 -0.3001 -1.3375 11 6 5.1591 -0.3417 -1.7373 12 6 6.0118 -1.3117 -1.2362 13 6 5.5481 -2.2549 -0.3228 14 7 6.4184 -3.2299 0.1772 15 7 6.1054 -4.5551 0.2453 16 6 7.3701 -5.3137 0.3858 17 6 8.2957 -4.2688 1.0547 18 6 7.6542 -2.9583 0.6361 19 8 8.1642 -1.8601 0.7057 20 6 4.2288 -2.2295 0.0909 21 1 -0.4851 0.8400 0.0004 22 1 3.1817 0.4582 -1.7305 23 1 5.5290 0.3854 -2.4449 24 1 7.0433 -1.3360 -1.5555 25 1 5.4846 -4.7408 1.0186 26 1 7.2338 -6.1826 1.0296 27 1 7.7572 -5.6098 -0.5892 28 1 8.2869 -4.3806 2.1390 29 1 9.3114 -4.3454 0.6667 30 1 3.8671 -2.9633 0.7959 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260296975.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:42 Heat of formation + Delta-G solvation = 6.115956 kcal Electronic energy + Delta-G solvation = -15744.252283 eV Core-core repulsion = 13118.542147 eV Total energy + Delta-G solvation = -2625.710136 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.18670 -39.40991 -38.26620 -35.72058 -33.98029 -32.24943 -30.45007 -29.91793 -27.11423 -24.52242 -23.53424 -22.37200 -21.32359 -19.81214 -18.48126 -17.94082 -17.43399 -16.83601 -16.36328 -15.71959 -15.55913 -15.15526 -14.65476 -14.57422 -14.45179 -13.90328 -13.72143 -13.44679 -12.98327 -12.85325 -12.46562 -12.37948 -11.84607 -11.71456 -11.50255 -11.07249 -10.86469 -9.97376 -9.64353 -8.95903 -8.81572 -6.55352 0.53444 0.71487 1.25450 1.38285 1.39543 1.48728 1.58019 2.10308 2.52161 3.12348 3.45481 3.53953 3.76263 4.06362 4.24334 4.40681 4.52603 4.61248 4.74477 4.83810 4.85445 4.92180 4.97015 5.28294 5.50568 5.63691 5.73645 5.85351 5.92207 6.16720 6.30902 6.60579 6.65018 6.76064 7.09907 8.12294 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.041541 B = 0.007404 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.878612 B = 3780.715753 C = 4122.337335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.055 3.945 3 Si 0.961 3.039 4 H -0.252 1.252 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.478 4.478 8 H 0.064 0.936 9 C 0.089 3.911 10 C -0.261 4.261 11 C -0.063 4.063 12 C -0.236 4.236 13 C 0.188 3.812 14 N -0.418 5.418 15 N -0.457 5.457 16 C 0.044 3.956 17 C -0.170 4.170 18 C 0.478 3.522 19 O -0.561 6.561 20 C -0.223 4.223 21 H 0.296 0.704 22 H 0.108 0.892 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.349 0.651 26 H 0.141 0.859 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -8.249 1.603 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.161 4.161 3 Si 0.785 3.215 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.085 3.915 10 C -0.280 4.280 11 C -0.081 4.081 12 C -0.258 4.258 13 C 0.097 3.903 14 N -0.232 5.232 15 N -0.182 5.182 16 C -0.083 4.083 17 C -0.211 4.211 18 C 0.268 3.732 19 O -0.437 6.437 20 C -0.245 4.245 21 H 0.107 0.893 22 H 0.125 0.875 23 H 0.151 0.849 24 H 0.122 0.878 25 H 0.169 0.831 26 H 0.159 0.841 27 H 0.125 0.875 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.870 -7.667 0.966 14.164 hybrid contribution -0.087 0.780 0.936 1.221 sum 11.783 -6.888 1.902 13.780 Atomic orbital electron populations 1.69702 1.09000 1.31723 1.35812 1.26724 0.95243 1.03937 0.90199 0.85608 0.79044 0.76951 0.79897 1.17730 1.20004 1.18868 1.19437 0.94644 0.96099 1.40498 0.91787 1.17672 0.92451 0.91378 0.89953 1.21291 0.96925 1.04881 1.04948 1.20784 0.92639 0.96812 0.97880 1.20452 0.99558 1.01578 1.04167 1.17296 0.89297 0.89247 0.94422 1.45138 1.14824 1.03610 1.59608 1.62885 1.16191 0.89613 1.49531 1.23698 0.85037 0.95903 1.03702 1.23055 1.02729 0.90295 1.04982 1.22621 0.81987 0.92410 0.76214 1.90703 1.67722 1.28967 1.56348 1.20862 0.92395 1.04990 1.06246 0.89288 0.87461 0.84912 0.87752 0.83089 0.84080 0.87493 0.85043 0.84779 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.13 13.93 21.82 0.30 -44.83 16 2 C 0.06 2.95 5.39 85.26 0.46 3.41 16 3 Si 0.96 43.28 24.57 68.60 1.69 44.96 16 4 H -0.25 -10.65 6.44 99.48 0.64 -10.01 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.26 -12.58 7.06 99.48 0.70 -11.88 16 7 C -0.48 -26.71 9.57 23.46 0.22 -26.48 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 9 C 0.09 4.63 5.14 -21.31 -0.11 4.53 16 10 C -0.26 -12.78 7.33 22.75 0.17 -12.62 16 11 C -0.06 -2.77 10.02 22.20 0.22 -2.55 16 12 C -0.24 -10.59 9.10 22.58 0.21 -10.39 16 13 C 0.19 8.37 6.00 38.10 0.23 8.60 16 14 N -0.42 -14.93 3.43 -302.76 -1.04 -15.96 16 15 N -0.46 -12.03 7.53 -181.64 -1.37 -13.39 16 16 C 0.04 0.66 7.96 86.67 0.69 1.35 16 17 C -0.17 -3.05 7.11 30.81 0.22 -2.83 16 18 C 0.48 16.18 7.86 88.04 0.69 16.88 16 19 O -0.56 -24.08 16.87 -3.05 -0.05 -24.13 16 20 C -0.22 -10.69 9.54 22.85 0.22 -10.47 16 21 H 0.30 14.30 8.30 -92.71 -0.77 13.53 16 22 H 0.11 5.15 4.42 -2.91 -0.01 5.13 16 23 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 24 H 0.10 4.51 7.63 -2.91 -0.02 4.49 16 25 H 0.35 8.17 9.04 -210.71 -1.90 6.26 16 26 H 0.14 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -69.58 258.08 1.94 -67.63 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.81 Total: 16.30 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 3.22 Total: -30.58 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.10 Total: -74.19 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.69 Total: 44.96 kcal Total: -69.58 1.94 -67.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260296975.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.751 kcal (2) G-P(sol) polarization free energy of solvation -69.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds