Wall clock time and date at job start Mon Mar 30 2020 03:35:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.36125 * 126.35026 * 2 1
4 4 N 1.30060 * 110.06773 * 179.97438 * 3 2 1
5 5 C 1.35814 * 109.63272 * 359.97438 * 4 3 2
6 6 C 1.38060 * 126.34816 * 179.97438 * 2 1 3
7 7 C 1.38889 * 134.01999 * 0.02562 * 6 2 1
8 8 C 1.37866 * 119.93435 * 179.97438 * 7 6 2
9 9 C 1.38709 * 120.50322 * 359.97438 * 8 7 6
10 10 C 1.38117 * 120.45837 * 0.02562 * 9 8 7
11 11 O 1.35903 * 120.16233 * 179.97438 * 10 9 8
12 12 C 1.42901 * 116.99849 * 0.02562 * 11 10 9
13 13 C 1.50701 * 109.47187 * 179.97438 * 12 11 10
14 14 H 1.08008 * 119.99587 * 359.97438 * 13 12 11
15 15 C 1.37875 * 120.00173 * 179.97438 * 13 12 11
16 16 N 1.31513 * 119.99745 * 0.02562 * 15 13 12
17 17 Si 1.86794 * 119.99871 * 180.02562 * 15 13 12
18 18 H 1.48499 * 109.47385 * 0.02562 * 17 15 13
19 19 H 1.48503 * 109.47130 * 119.99789 * 17 15 13
20 20 H 1.48500 * 109.47233 * 240.00008 * 17 15 13
21 21 H 1.09006 * 109.46711 * 270.02532 * 1 2 3
22 22 H 1.09001 * 109.47142 * 30.02086 * 1 2 3
23 23 H 1.09001 * 109.46701 * 150.02560 * 1 2 3
24 24 H 1.08008 * 124.96372 * 0.02562 * 3 2 1
25 25 H 1.07996 * 120.03905 * 359.97438 * 7 6 2
26 26 H 1.07997 * 119.74486 * 179.97438 * 8 7 6
27 27 H 1.08002 * 119.76497 * 180.02562 * 9 8 7
28 28 H 1.09000 * 109.47304 * 299.99886 * 12 11 10
29 29 H 1.09000 * 109.47157 * 60.00438 * 12 11 10
30 30 H 0.97007 * 119.99437 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2719 1.0964 0.0000
4 7 3.5203 0.7317 0.0005
5 6 3.5997 -0.6241 0.0015
6 6 2.2833 -1.1120 0.0005
7 6 2.0510 -2.4813 0.0007
8 6 3.1137 -3.3595 0.0007
9 6 4.4178 -2.8866 0.0000
10 6 4.6701 -1.5287 -0.0002
11 8 5.9501 -1.0720 -0.0003
12 6 6.9890 -2.0533 -0.0009
13 6 8.3298 -1.3653 -0.0016
14 1 8.3832 -0.2866 -0.0021
15 6 9.4883 -2.1130 -0.0017
16 7 9.4231 -3.4265 -0.0016
17 14 11.1502 -1.2602 -0.0019
18 1 10.9515 0.2114 -0.0013
19 1 11.9103 -1.6569 1.2106
20 1 11.9101 -1.6571 -1.2144
21 1 -0.3633 0.0005 1.0277
22 1 -0.3633 0.8898 -0.5142
23 1 -0.3633 -0.8902 -0.5135
24 1 1.9259 2.1195 0.0004
25 1 1.0388 -2.8579 0.0008
26 1 2.9295 -4.4236 0.0012
27 1 5.2414 -3.5852 -0.0004
28 1 6.9005 -2.6766 0.8889
29 1 6.9001 -2.6760 -0.8911
30 1 10.2382 -3.9525 -0.0013
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260341031.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:07
Heat of formation + Delta-G solvation = 34.449684 kcal
Electronic energy + Delta-G solvation = -15354.386739 eV
Core-core repulsion = 12729.905245 eV
Total energy + Delta-G solvation = -2624.481494 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 232.095 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.78553 -38.41800 -35.77620 -33.95083 -32.82557 -29.35024 -29.10086 -27.25979
-26.82649 -23.40331 -22.47486 -21.46976 -20.10814 -17.32906 -17.05743 -16.24383
-15.92668 -15.69339 -14.95372 -14.53832 -14.44616 -14.00242 -13.43930 -13.02174
-12.99368 -12.63588 -12.12790 -11.45202 -11.32765 -10.95935 -10.93607 -10.89304
-10.40122 -10.16398 -9.68020 -9.46130 -9.19935 -8.50991 -8.09521 -7.05932
-6.19171 -4.21733 1.44799 1.91719 2.76246 3.12019 3.27961 3.34299
3.41646 4.17856 4.29690 4.49027 4.58824 4.65206 4.89184 4.99717
5.18289 5.20967 5.44490 5.45975 5.69813 5.87624 5.94872 6.41413
6.62109 6.69962 6.89589 6.98678 7.20449 7.25623 7.35554 7.74513
8.00297 8.15149 8.56470 8.92274 9.43084 10.92287
Molecular weight = 232.10amu
Principal moments of inertia in cm(-1)
A = 0.048245 B = 0.005708 C = 0.005123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 580.237224 B = 4904.429247 C = 5464.219580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.504 5.504
3 C 0.226 3.774
4 N -0.464 5.464
5 C 0.003 3.997
6 C 0.089 3.911
7 C -0.186 4.186
8 C -0.044 4.044
9 C -0.247 4.247
10 C 0.218 3.782
11 O -0.299 6.299
12 C 0.189 3.811
13 C -0.520 4.520
14 H 0.072 0.928
15 C 0.060 3.940
16 N -0.896 5.896
17 Si 0.913 3.087
18 H -0.269 1.269
19 H -0.281 1.281
20 H -0.281 1.281
21 H 0.069 0.931
22 H 0.084 0.916
23 H 0.080 0.920
24 H 0.209 0.791
25 H 0.114 0.886
26 H 0.127 0.873
27 H 0.140 0.860
28 H 0.024 0.976
29 H 0.024 0.976
30 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.102 3.048 -0.058 18.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.197 5.197
3 C -0.059 4.059
4 N -0.182 5.182
5 C -0.115 4.115
6 C -0.021 4.021
7 C -0.208 4.208
8 C -0.064 4.064
9 C -0.269 4.269
10 C 0.167 3.833
11 O -0.210 6.210
12 C 0.116 3.884
13 C -0.558 4.558
14 H 0.090 0.910
15 C -0.142 4.142
16 N -0.534 5.534
17 Si 0.740 3.260
18 H -0.193 1.193
19 H -0.207 1.207
20 H -0.207 1.207
21 H 0.088 0.912
22 H 0.103 0.897
23 H 0.099 0.901
24 H 0.225 0.775
25 H 0.132 0.868
26 H 0.145 0.855
27 H 0.158 0.842
28 H 0.042 0.958
29 H 0.042 0.958
30 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -17.278 3.640 -0.059 17.657
hybrid contribution 0.088 -0.418 0.009 0.427
sum -17.190 3.222 -0.050 17.489
Atomic orbital electron populations
1.21855 0.76690 1.04163 1.02968 1.45238 1.06800 1.05534 1.62149
1.25212 0.85179 0.93095 1.02421 1.70384 1.17891 1.11155 1.18724
1.18112 0.90676 0.89887 1.12811 1.18526 0.90017 0.89232 1.04297
1.19552 0.99035 0.88491 1.13682 1.20624 0.91272 0.98781 0.95711
1.21101 0.98344 0.93994 1.13441 1.18403 0.84611 0.90262 0.90025
1.86222 1.11233 1.39130 1.84380 1.20742 0.83211 0.87357 0.97062
1.21038 0.88591 0.94487 1.51720 0.90990 1.24922 0.99634 0.94896
0.94748 1.69964 1.28952 1.04566 1.49958 0.86194 0.82307 0.79849
0.77694 1.19303 1.20702 1.20697 0.91199 0.89733 0.90131 0.77465
0.86784 0.85546 0.84185 0.95800 0.95806 0.92459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.63 11.18 59.85 0.67 1.30 16
2 N -0.50 -6.67 3.21 -123.18 -0.40 -7.06 16
3 C 0.23 3.22 12.50 -89.74 -1.12 2.09 16
4 N -0.46 -9.30 11.27 -11.96 -0.13 -9.44 16
5 C 0.00 0.06 7.17 -84.58 -0.61 -0.55 16
6 C 0.09 1.50 6.87 -84.01 -0.58 0.92 16
7 C -0.19 -2.79 10.04 -39.48 -0.40 -3.19 16
8 C -0.04 -0.70 10.02 -39.54 -0.40 -1.10 16
9 C -0.25 -4.92 9.03 -39.45 -0.36 -5.27 16
10 C 0.22 4.99 6.72 -38.91 -0.26 4.72 16
11 O -0.30 -7.96 10.13 -19.44 -0.20 -8.16 16
12 C 0.19 5.24 4.49 36.01 0.16 5.40 16
13 C -0.52 -15.45 9.43 -34.44 -0.32 -15.77 16
14 H 0.07 2.15 7.81 -52.48 -0.41 1.74 16
15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
16 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16
17 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16
18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
21 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
22 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
23 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16
24 H 0.21 1.84 8.06 -52.48 -0.42 1.41 16
25 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16
26 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16
27 H 0.14 2.85 6.27 -52.49 -0.33 2.52 16
28 H 0.02 0.68 7.66 -51.93 -0.40 0.28 16
29 H 0.02 0.68 7.66 -51.93 -0.40 0.28 16
30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16
LS Contribution 268.00 15.07 4.04 4.04
Total: -1.00 -34.77 268.00 -7.49 -42.25
By element:
Atomic # 1 Polarization: 0.20 SS G_CDS: -3.21 Total: -3.01 kcal
Atomic # 6 Polarization: -6.52 SS G_CDS: -3.31 Total: -9.82 kcal
Atomic # 7 Polarization: -42.36 SS G_CDS: 0.21 Total: -42.15 kcal
Atomic # 8 Polarization: -7.96 SS G_CDS: -0.20 Total: -8.16 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -34.77 -7.49 -42.25 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260341031.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.702 kcal
(2) G-P(sol) polarization free energy of solvation -34.765 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.450 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds