Wall clock time and date at job start Mon Mar 30 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36125 * 126.35026 * 2 1 4 4 N 1.30060 * 110.06773 * 179.97438 * 3 2 1 5 5 C 1.35814 * 109.63272 * 359.97438 * 4 3 2 6 6 C 1.38060 * 126.34816 * 179.97438 * 2 1 3 7 7 C 1.38889 * 134.01999 * 0.02562 * 6 2 1 8 8 C 1.37866 * 119.93435 * 179.97438 * 7 6 2 9 9 C 1.38709 * 120.50322 * 359.97438 * 8 7 6 10 10 C 1.38117 * 120.45837 * 0.02562 * 9 8 7 11 11 O 1.35903 * 120.16233 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99849 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.47187 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99587 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00173 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99745 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47385 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47130 * 119.99789 * 17 15 13 20 20 H 1.48500 * 109.47233 * 240.00008 * 17 15 13 21 21 H 1.09006 * 109.46711 * 270.02532 * 1 2 3 22 22 H 1.09001 * 109.47142 * 30.02086 * 1 2 3 23 23 H 1.09001 * 109.46701 * 150.02560 * 1 2 3 24 24 H 1.08008 * 124.96372 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.03905 * 359.97438 * 7 6 2 26 26 H 1.07997 * 119.74486 * 179.97438 * 8 7 6 27 27 H 1.08002 * 119.76497 * 180.02562 * 9 8 7 28 28 H 1.09000 * 109.47304 * 299.99886 * 12 11 10 29 29 H 1.09000 * 109.47157 * 60.00438 * 12 11 10 30 30 H 0.97007 * 119.99437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2719 1.0964 0.0000 4 7 3.5203 0.7317 0.0005 5 6 3.5997 -0.6241 0.0015 6 6 2.2833 -1.1120 0.0005 7 6 2.0510 -2.4813 0.0007 8 6 3.1137 -3.3595 0.0007 9 6 4.4178 -2.8866 0.0000 10 6 4.6701 -1.5287 -0.0002 11 8 5.9501 -1.0720 -0.0003 12 6 6.9890 -2.0533 -0.0009 13 6 8.3298 -1.3653 -0.0016 14 1 8.3832 -0.2866 -0.0021 15 6 9.4883 -2.1130 -0.0017 16 7 9.4231 -3.4265 -0.0016 17 14 11.1502 -1.2602 -0.0019 18 1 10.9515 0.2114 -0.0013 19 1 11.9103 -1.6569 1.2106 20 1 11.9101 -1.6571 -1.2144 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.9259 2.1195 0.0004 25 1 1.0388 -2.8579 0.0008 26 1 2.9295 -4.4236 0.0012 27 1 5.2414 -3.5852 -0.0004 28 1 6.9005 -2.6766 0.8889 29 1 6.9001 -2.6760 -0.8911 30 1 10.2382 -3.9525 -0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260341031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:07 Heat of formation + Delta-G solvation = 34.449684 kcal Electronic energy + Delta-G solvation = -15354.386739 eV Core-core repulsion = 12729.905245 eV Total energy + Delta-G solvation = -2624.481494 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.78553 -38.41800 -35.77620 -33.95083 -32.82557 -29.35024 -29.10086 -27.25979 -26.82649 -23.40331 -22.47486 -21.46976 -20.10814 -17.32906 -17.05743 -16.24383 -15.92668 -15.69339 -14.95372 -14.53832 -14.44616 -14.00242 -13.43930 -13.02174 -12.99368 -12.63588 -12.12790 -11.45202 -11.32765 -10.95935 -10.93607 -10.89304 -10.40122 -10.16398 -9.68020 -9.46130 -9.19935 -8.50991 -8.09521 -7.05932 -6.19171 -4.21733 1.44799 1.91719 2.76246 3.12019 3.27961 3.34299 3.41646 4.17856 4.29690 4.49027 4.58824 4.65206 4.89184 4.99717 5.18289 5.20967 5.44490 5.45975 5.69813 5.87624 5.94872 6.41413 6.62109 6.69962 6.89589 6.98678 7.20449 7.25623 7.35554 7.74513 8.00297 8.15149 8.56470 8.92274 9.43084 10.92287 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.048245 B = 0.005708 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.237224 B = 4904.429247 C = 5464.219580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.504 5.504 3 C 0.226 3.774 4 N -0.464 5.464 5 C 0.003 3.997 6 C 0.089 3.911 7 C -0.186 4.186 8 C -0.044 4.044 9 C -0.247 4.247 10 C 0.218 3.782 11 O -0.299 6.299 12 C 0.189 3.811 13 C -0.520 4.520 14 H 0.072 0.928 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.913 3.087 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.209 0.791 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.140 0.860 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.102 3.048 -0.058 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.197 5.197 3 C -0.059 4.059 4 N -0.182 5.182 5 C -0.115 4.115 6 C -0.021 4.021 7 C -0.208 4.208 8 C -0.064 4.064 9 C -0.269 4.269 10 C 0.167 3.833 11 O -0.210 6.210 12 C 0.116 3.884 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.740 3.260 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.225 0.775 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.158 0.842 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.278 3.640 -0.059 17.657 hybrid contribution 0.088 -0.418 0.009 0.427 sum -17.190 3.222 -0.050 17.489 Atomic orbital electron populations 1.21855 0.76690 1.04163 1.02968 1.45238 1.06800 1.05534 1.62149 1.25212 0.85179 0.93095 1.02421 1.70384 1.17891 1.11155 1.18724 1.18112 0.90676 0.89887 1.12811 1.18526 0.90017 0.89232 1.04297 1.19552 0.99035 0.88491 1.13682 1.20624 0.91272 0.98781 0.95711 1.21101 0.98344 0.93994 1.13441 1.18403 0.84611 0.90262 0.90025 1.86222 1.11233 1.39130 1.84380 1.20742 0.83211 0.87357 0.97062 1.21038 0.88591 0.94487 1.51720 0.90990 1.24922 0.99634 0.94896 0.94748 1.69964 1.28952 1.04566 1.49958 0.86194 0.82307 0.79849 0.77694 1.19303 1.20702 1.20697 0.91199 0.89733 0.90131 0.77465 0.86784 0.85546 0.84185 0.95800 0.95806 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.18 59.85 0.67 1.30 16 2 N -0.50 -6.67 3.21 -123.18 -0.40 -7.06 16 3 C 0.23 3.22 12.50 -89.74 -1.12 2.09 16 4 N -0.46 -9.30 11.27 -11.96 -0.13 -9.44 16 5 C 0.00 0.06 7.17 -84.58 -0.61 -0.55 16 6 C 0.09 1.50 6.87 -84.01 -0.58 0.92 16 7 C -0.19 -2.79 10.04 -39.48 -0.40 -3.19 16 8 C -0.04 -0.70 10.02 -39.54 -0.40 -1.10 16 9 C -0.25 -4.92 9.03 -39.45 -0.36 -5.27 16 10 C 0.22 4.99 6.72 -38.91 -0.26 4.72 16 11 O -0.30 -7.96 10.13 -19.44 -0.20 -8.16 16 12 C 0.19 5.24 4.49 36.01 0.16 5.40 16 13 C -0.52 -15.45 9.43 -34.44 -0.32 -15.77 16 14 H 0.07 2.15 7.81 -52.48 -0.41 1.74 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 17 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.21 1.84 8.06 -52.48 -0.42 1.41 16 25 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 26 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.14 2.85 6.27 -52.49 -0.33 2.52 16 28 H 0.02 0.68 7.66 -51.93 -0.40 0.28 16 29 H 0.02 0.68 7.66 -51.93 -0.40 0.28 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -34.77 268.00 -7.49 -42.25 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -3.21 Total: -3.01 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.31 Total: -9.82 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.21 Total: -42.15 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.20 Total: -8.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.77 -7.49 -42.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.702 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds