Wall clock time and date at job start Mon Mar 30 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36125 * 126.35026 * 2 1 4 4 N 1.30060 * 110.06773 * 179.97438 * 3 2 1 5 5 C 1.35814 * 109.63272 * 359.97438 * 4 3 2 6 6 C 1.38060 * 126.34816 * 179.97438 * 2 1 3 7 7 C 1.38889 * 134.01999 * 0.02562 * 6 2 1 8 8 C 1.37866 * 119.93435 * 179.97438 * 7 6 2 9 9 C 1.38709 * 120.50322 * 359.97438 * 8 7 6 10 10 C 1.38117 * 120.45837 * 0.02562 * 9 8 7 11 11 O 1.35903 * 120.16233 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99849 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.47187 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99587 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00173 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99745 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47385 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47130 * 119.99789 * 17 15 13 20 20 H 1.48500 * 109.47233 * 240.00008 * 17 15 13 21 21 H 1.09006 * 109.46711 * 270.02532 * 1 2 3 22 22 H 1.09001 * 109.47142 * 30.02086 * 1 2 3 23 23 H 1.09001 * 109.46701 * 150.02560 * 1 2 3 24 24 H 1.08008 * 124.96372 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.03905 * 359.97438 * 7 6 2 26 26 H 1.07997 * 119.74486 * 179.97438 * 8 7 6 27 27 H 1.08002 * 119.76497 * 180.02562 * 9 8 7 28 28 H 1.09000 * 109.47304 * 299.99886 * 12 11 10 29 29 H 1.09000 * 109.47157 * 60.00438 * 12 11 10 30 30 H 0.97007 * 119.99437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2719 1.0964 0.0000 4 7 3.5203 0.7317 0.0005 5 6 3.5997 -0.6241 0.0015 6 6 2.2833 -1.1120 0.0005 7 6 2.0510 -2.4813 0.0007 8 6 3.1137 -3.3595 0.0007 9 6 4.4178 -2.8866 0.0000 10 6 4.6701 -1.5287 -0.0002 11 8 5.9501 -1.0720 -0.0003 12 6 6.9890 -2.0533 -0.0009 13 6 8.3298 -1.3653 -0.0016 14 1 8.3832 -0.2866 -0.0021 15 6 9.4883 -2.1130 -0.0017 16 7 9.4231 -3.4265 -0.0016 17 14 11.1502 -1.2602 -0.0019 18 1 10.9515 0.2114 -0.0013 19 1 11.9103 -1.6569 1.2106 20 1 11.9101 -1.6571 -1.2144 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.9259 2.1195 0.0004 25 1 1.0388 -2.8579 0.0008 26 1 2.9295 -4.4236 0.0012 27 1 5.2414 -3.5852 -0.0004 28 1 6.9005 -2.6766 0.8889 29 1 6.9001 -2.6760 -0.8911 30 1 10.2382 -3.9525 -0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260341031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:07 Heat of formation + Delta-G solvation = 11.169822 kcal Electronic energy + Delta-G solvation = -15355.396230 eV Core-core repulsion = 12729.905245 eV Total energy + Delta-G solvation = -2625.490984 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.03303 -40.10867 -37.26103 -35.20948 -34.87542 -30.79529 -30.62125 -29.17969 -27.71972 -25.33182 -23.83076 -22.96275 -21.45070 -19.00064 -18.54633 -17.92122 -17.46427 -16.91770 -16.61572 -16.18041 -16.08908 -15.53838 -14.66098 -14.39362 -14.01614 -13.99099 -13.36528 -13.05586 -13.04310 -12.77360 -12.61955 -12.60617 -12.09612 -12.01765 -11.38196 -10.95502 -10.92545 -10.62558 -9.41128 -8.54804 -8.40513 -6.54694 0.12834 0.48901 1.37485 1.39610 1.54498 1.76472 1.92066 2.27575 2.71381 2.85944 2.93714 3.38831 3.81176 3.99926 4.12774 4.24864 4.32961 4.51952 4.56091 4.68163 4.73057 4.79168 4.95414 5.17293 5.32340 5.39929 5.49648 5.53400 5.82614 5.91237 6.29173 6.47734 6.73034 7.03598 7.17898 8.72225 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.048245 B = 0.005708 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.237224 B = 4904.429247 C = 5464.219580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.494 5.494 3 C 0.256 3.744 4 N -0.539 5.539 5 C -0.029 4.029 6 C 0.080 3.920 7 C -0.153 4.153 8 C -0.052 4.052 9 C -0.250 4.250 10 C 0.153 3.847 11 O -0.333 6.333 12 C 0.211 3.789 13 C -0.559 4.559 14 H 0.059 0.941 15 C 0.014 3.986 16 N -0.923 5.923 17 Si 0.989 3.011 18 H -0.268 1.268 19 H -0.266 1.266 20 H -0.266 1.266 21 H 0.088 0.912 22 H 0.117 0.883 23 H 0.094 0.906 24 H 0.262 0.738 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.119 0.881 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.912 3.543 -0.085 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.185 5.185 3 C -0.030 4.030 4 N -0.258 5.258 5 C -0.146 4.146 6 C -0.031 4.031 7 C -0.174 4.174 8 C -0.071 4.071 9 C -0.272 4.272 10 C 0.105 3.895 11 O -0.246 6.246 12 C 0.138 3.862 13 C -0.597 4.597 14 H 0.077 0.923 15 C -0.185 4.185 16 N -0.562 5.562 17 Si 0.811 3.189 18 H -0.192 1.192 19 H -0.191 1.191 20 H -0.191 1.191 21 H 0.106 0.894 22 H 0.136 0.864 23 H 0.113 0.887 24 H 0.278 0.722 25 H 0.183 0.817 26 H 0.184 0.816 27 H 0.137 0.863 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.173 4.119 -0.085 20.589 hybrid contribution 0.643 -0.527 0.019 0.831 sum -19.530 3.591 -0.066 19.858 Atomic orbital electron populations 1.22369 0.72531 1.06635 1.04954 1.45622 1.08936 1.03795 1.60116 1.26225 0.83838 0.95213 0.97725 1.70316 1.21541 1.11168 1.22818 1.18432 0.91866 0.90794 1.13540 1.18811 0.89090 0.90958 1.04217 1.20108 1.00927 0.87360 1.08980 1.21012 0.89493 1.01100 0.95522 1.21160 1.00023 0.92634 1.13345 1.18931 0.83511 0.92293 0.94782 1.86120 1.12902 1.38948 1.86652 1.20235 0.83796 0.87170 0.95034 1.21320 0.90299 0.94200 1.53857 0.92250 1.25947 1.03658 0.95644 0.93280 1.70057 1.30667 1.05995 1.49436 0.85057 0.76697 0.78479 0.78680 1.19204 1.19096 1.19083 0.89355 0.86430 0.88704 0.72244 0.81719 0.81609 0.86274 0.97807 0.97810 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 11.18 127.77 1.43 2.10 16 2 N -0.49 -11.24 3.21 -543.62 -1.74 -12.99 16 3 C 0.26 6.63 12.50 180.04 2.25 8.88 16 4 N -0.54 -22.02 11.27 -191.75 -2.16 -24.19 16 5 C -0.03 -1.28 7.17 39.51 0.28 -0.99 16 6 C 0.08 2.57 6.87 38.84 0.27 2.83 16 7 C -0.15 -4.08 10.04 22.34 0.22 -3.85 16 8 C -0.05 -1.58 10.02 22.29 0.22 -1.36 16 9 C -0.25 -10.60 9.03 22.35 0.20 -10.39 16 10 C 0.15 7.57 6.72 22.70 0.15 7.72 16 11 O -0.33 -19.54 10.13 -92.46 -0.94 -20.48 16 12 C 0.21 12.81 4.49 71.24 0.32 13.13 16 13 C -0.56 -35.37 9.43 25.60 0.24 -35.13 16 14 H 0.06 3.79 7.81 -2.91 -0.02 3.77 16 15 C 0.01 0.84 5.46 84.65 0.46 1.31 16 16 N -0.92 -56.11 13.29 21.45 0.28 -55.83 16 17 Si 0.99 45.71 29.54 68.60 2.03 47.74 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 22 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 23 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.26 3.44 8.06 -2.91 -0.02 3.41 16 25 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 26 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 27 H 0.12 5.38 6.27 -2.91 -0.02 5.36 16 28 H 0.00 0.26 7.66 -2.39 -0.02 0.24 16 29 H 0.00 0.26 7.66 -2.39 -0.02 0.24 16 30 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -84.05 268.00 4.67 -79.38 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.14 Total: 2.12 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 6.06 Total: -15.76 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -3.62 Total: -93.00 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.94 Total: -20.48 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -84.05 4.67 -79.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.554 kcal (2) G-P(sol) polarization free energy of solvation -84.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds