Wall clock time and date at job start Mon Mar 30 2020 03:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39872 * 125.46268 * 2 1 4 4 C 1.30227 * 110.09316 * 179.97438 * 3 2 1 5 5 C 1.45966 * 107.79963 * 359.97438 * 4 3 2 6 6 C 1.39971 * 133.88092 * 180.02562 * 5 4 3 7 7 C 1.36339 * 119.85674 * 179.97438 * 6 5 4 8 8 C 1.39453 * 120.57908 * 359.84677 * 7 6 5 9 9 O 1.35908 * 119.72515 * 180.20437 * 8 7 6 10 10 C 1.42902 * 117.00016 * 0.15127 * 9 8 7 11 11 C 1.50700 * 109.47207 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99712 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00152 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00027 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99893 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47344 * 89.99771 * 15 13 11 17 17 H 1.48503 * 109.47008 * 209.99987 * 15 13 11 18 18 H 1.48502 * 109.47140 * 329.99681 * 15 13 11 19 19 C 1.38068 * 120.55057 * 0.35921 * 8 7 6 20 20 C 1.37061 * 125.47008 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.47560 * 270.04035 * 1 2 3 22 22 H 1.08997 * 109.47121 * 30.04972 * 1 2 3 23 23 H 1.09008 * 109.46717 * 150.04294 * 1 2 3 24 24 H 1.08005 * 126.10159 * 179.97438 * 4 3 2 25 25 H 1.08008 * 120.06840 * 359.97438 * 6 5 4 26 26 H 1.08000 * 119.70548 * 180.02562 * 7 6 5 27 27 H 1.08997 * 109.46933 * 299.99959 * 10 9 8 28 28 H 1.09002 * 109.46832 * 59.99580 * 10 9 8 29 29 H 0.96999 * 119.99594 * 180.02562 * 14 13 11 30 30 H 1.08002 * 120.15897 * 179.87550 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5322 0.7941 0.0005 5 6 3.5941 -0.6643 0.0016 6 6 4.6432 -1.5908 0.0029 7 6 4.3692 -2.9264 0.0042 8 6 3.0505 -3.3801 0.0073 9 8 2.7972 -4.7153 0.0127 10 6 3.9273 -5.5900 0.0182 11 6 3.4549 -7.0210 0.0243 12 1 2.3974 -7.2406 0.0236 13 6 4.3726 -8.0499 0.0298 14 7 3.9603 -9.2988 0.0346 15 14 6.2016 -7.6701 0.0303 16 1 6.6847 -7.5634 1.4305 17 1 6.9336 -8.7596 -0.6643 18 1 6.4405 -6.3853 -0.6750 19 6 2.0001 -2.4841 0.0018 20 6 2.2603 -1.1163 0.0005 21 1 -0.3634 0.0007 1.0276 22 1 -0.3633 0.8895 -0.5146 23 1 -0.3633 -0.8905 -0.5132 24 1 4.3771 1.4669 0.0003 25 1 5.6676 -1.2485 0.0030 26 1 5.1805 -3.6392 0.0056 27 1 4.5304 -5.4099 -0.8716 28 1 4.5278 -5.4021 0.9083 29 1 4.6060 -10.0226 0.0388 30 1 0.9812 -2.8424 0.0022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260368639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:53 Heat of formation + Delta-G solvation = 51.124949 kcal Electronic energy + Delta-G solvation = -15246.353241 eV Core-core repulsion = 12622.594841 eV Total energy + Delta-G solvation = -2623.758400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.06121 -38.78087 -35.64255 -33.35464 -32.82043 -30.37543 -29.21404 -27.92760 -26.42702 -23.07692 -22.61826 -21.15644 -20.39917 -17.71215 -16.98557 -16.71860 -15.50814 -15.46855 -15.17031 -14.79355 -14.31889 -14.15766 -13.57444 -12.92309 -12.82533 -12.70400 -12.29193 -12.09140 -11.75831 -11.16542 -10.98159 -10.86957 -10.60490 -10.17514 -10.00714 -9.86135 -9.39309 -8.78481 -7.85150 -7.60175 -6.27301 -4.29791 1.21390 1.75285 2.45521 2.65223 3.15105 3.21420 3.22854 4.02586 4.04282 4.21293 4.51869 4.81318 4.91971 5.03308 5.16957 5.24730 5.37350 5.39901 5.61418 5.62779 5.74671 6.20316 6.23609 6.47972 6.56392 6.67335 6.69719 6.90220 7.15178 7.33774 7.72603 7.92869 8.45394 8.81733 9.28188 10.84992 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.049798 B = 0.005673 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.136583 B = 4934.524946 C = 5476.207222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.416 5.416 3 N -0.270 5.270 4 C 0.082 3.918 5 C -0.230 4.230 6 C -0.004 4.004 7 C -0.235 4.235 8 C 0.200 3.800 9 O -0.298 6.298 10 C 0.167 3.833 11 C -0.531 4.531 12 H 0.087 0.913 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.873 3.127 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.208 4.208 20 C 0.169 3.831 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.192 0.808 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.270 0.730 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 17.414 -0.164 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.206 5.206 3 N -0.082 5.082 4 C -0.116 4.116 5 C -0.238 4.238 6 C -0.024 4.024 7 C -0.255 4.255 8 C 0.148 3.852 9 O -0.209 6.209 10 C 0.093 3.907 11 C -0.568 4.568 12 H 0.105 0.895 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.699 3.301 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.231 4.231 20 C 0.055 3.945 21 H 0.085 0.915 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.209 0.791 25 H 0.145 0.855 26 H 0.152 0.848 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.464 18.054 -0.166 18.114 hybrid contribution 1.663 -0.668 0.029 1.792 sum 0.198 17.386 -0.137 17.387 Atomic orbital electron populations 1.21689 0.74462 1.03966 1.02760 1.48020 1.05588 1.00986 1.66000 1.76495 1.02675 1.09000 1.20068 1.24942 0.94534 0.93138 0.98979 1.19729 0.93053 0.93155 1.17850 1.20065 0.97548 0.91270 0.93566 1.21018 0.96378 0.96620 1.11515 1.18883 0.92141 0.84906 0.89221 1.86169 1.37847 1.11521 1.85370 1.21074 0.84184 0.89339 0.96077 1.20762 0.96790 0.86413 1.52847 0.89543 1.24695 0.98941 0.94611 0.94208 1.69850 1.34941 0.98589 1.49059 0.86893 0.85233 0.78890 0.79095 1.19564 1.20408 1.18849 1.18886 0.98951 0.87760 1.17554 1.18296 0.90444 0.88654 0.97148 0.91543 0.89848 0.89756 0.79094 0.85472 0.84763 0.96068 0.96530 0.91998 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.15 11.40 59.85 0.68 1.83 16 2 N -0.42 -6.04 4.05 -65.47 -0.27 -6.31 16 3 N -0.27 -3.89 12.40 31.88 0.40 -3.50 16 4 C 0.08 1.04 12.28 -15.14 -0.19 0.86 16 5 C -0.23 -3.47 6.36 -105.18 -0.67 -4.14 16 6 C 0.00 -0.06 10.05 -39.62 -0.40 -0.46 16 7 C -0.24 -4.05 8.95 -39.81 -0.36 -4.41 16 8 C 0.20 3.87 6.68 -39.19 -0.26 3.61 16 9 O -0.30 -6.85 10.11 -19.45 -0.20 -7.05 16 10 C 0.17 4.02 3.55 36.01 0.13 4.14 16 11 C -0.53 -15.08 9.99 -34.44 -0.34 -15.42 16 12 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 15 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 19 C -0.21 -3.61 9.94 -39.27 -0.39 -4.00 16 20 C 0.17 2.74 6.87 -84.18 -0.58 2.16 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 0.76 8.13 -51.92 -0.42 0.34 16 24 H 0.19 1.60 8.06 -52.48 -0.42 1.17 16 25 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 26 H 0.13 2.28 6.24 -52.49 -0.33 1.95 16 27 H 0.02 0.50 6.69 -51.93 -0.35 0.15 16 28 H 0.02 0.39 7.08 -51.93 -0.37 0.02 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -31.98 265.24 -5.60 -37.58 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -3.17 Total: -0.98 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.47 Total: -13.70 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.90 Total: -35.38 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.20 Total: -7.05 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.98 -5.60 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.705 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds