Wall clock time and date at job start Mon Mar 30 2020 03:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39872 * 125.46268 * 2 1 4 4 C 1.30227 * 110.09316 * 179.97438 * 3 2 1 5 5 C 1.45966 * 107.79963 * 359.97438 * 4 3 2 6 6 C 1.39971 * 133.88092 * 180.02562 * 5 4 3 7 7 C 1.36339 * 119.85674 * 179.97438 * 6 5 4 8 8 C 1.39453 * 120.57908 * 359.84677 * 7 6 5 9 9 O 1.35908 * 119.72515 * 180.20437 * 8 7 6 10 10 C 1.42902 * 117.00016 * 0.15127 * 9 8 7 11 11 C 1.50700 * 109.47207 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99712 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00152 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00027 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99893 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47344 * 89.99771 * 15 13 11 17 17 H 1.48503 * 109.47008 * 209.99987 * 15 13 11 18 18 H 1.48502 * 109.47140 * 329.99681 * 15 13 11 19 19 C 1.38068 * 120.55057 * 0.35921 * 8 7 6 20 20 C 1.37061 * 125.47008 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.47560 * 270.04035 * 1 2 3 22 22 H 1.08997 * 109.47121 * 30.04972 * 1 2 3 23 23 H 1.09008 * 109.46717 * 150.04294 * 1 2 3 24 24 H 1.08005 * 126.10159 * 179.97438 * 4 3 2 25 25 H 1.08008 * 120.06840 * 359.97438 * 6 5 4 26 26 H 1.08000 * 119.70548 * 180.02562 * 7 6 5 27 27 H 1.08997 * 109.46933 * 299.99959 * 10 9 8 28 28 H 1.09002 * 109.46832 * 59.99580 * 10 9 8 29 29 H 0.96999 * 119.99594 * 180.02562 * 14 13 11 30 30 H 1.08002 * 120.15897 * 179.87550 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5322 0.7941 0.0005 5 6 3.5941 -0.6643 0.0016 6 6 4.6432 -1.5908 0.0029 7 6 4.3692 -2.9264 0.0042 8 6 3.0505 -3.3801 0.0073 9 8 2.7972 -4.7153 0.0127 10 6 3.9273 -5.5900 0.0182 11 6 3.4549 -7.0210 0.0243 12 1 2.3974 -7.2406 0.0236 13 6 4.3726 -8.0499 0.0298 14 7 3.9603 -9.2988 0.0346 15 14 6.2016 -7.6701 0.0303 16 1 6.6847 -7.5634 1.4305 17 1 6.9336 -8.7596 -0.6643 18 1 6.4405 -6.3853 -0.6750 19 6 2.0001 -2.4841 0.0018 20 6 2.2603 -1.1163 0.0005 21 1 -0.3634 0.0007 1.0276 22 1 -0.3633 0.8895 -0.5146 23 1 -0.3633 -0.8905 -0.5132 24 1 4.3771 1.4669 0.0003 25 1 5.6676 -1.2485 0.0030 26 1 5.1805 -3.6392 0.0056 27 1 4.5304 -5.4099 -0.8716 28 1 4.5278 -5.4021 0.9083 29 1 4.6060 -10.0226 0.0388 30 1 0.9812 -2.8424 0.0022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260368639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:53 Heat of formation + Delta-G solvation = 29.717230 kcal Electronic energy + Delta-G solvation = -15247.281550 eV Core-core repulsion = 12622.594841 eV Total energy + Delta-G solvation = -2624.686708 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.21091 -40.27276 -36.98787 -34.98067 -34.34131 -31.67306 -30.74097 -29.52371 -27.43676 -24.78388 -23.96226 -22.45896 -21.56699 -19.41766 -18.65594 -17.93121 -17.04685 -16.74850 -16.67834 -16.24138 -15.84288 -15.32056 -14.79491 -14.56075 -13.93818 -13.92564 -13.50423 -13.34581 -13.29599 -13.08601 -12.57852 -12.21119 -11.87169 -11.74549 -11.60643 -11.39599 -11.02573 -10.87550 -9.10262 -8.86396 -8.42190 -6.53634 0.02352 0.49892 1.34458 1.37589 1.42643 1.48028 1.56924 2.26883 2.53469 2.77827 2.90663 3.53456 3.73810 3.84851 4.05744 4.28246 4.34458 4.41386 4.45507 4.52387 4.64735 4.69641 4.80023 5.00332 5.20549 5.25048 5.44897 5.50414 5.72697 5.95617 6.05896 6.50674 6.65767 6.72198 7.10471 8.74380 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.049798 B = 0.005673 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.136583 B = 4934.524946 C = 5476.207222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.423 5.423 3 N -0.287 5.287 4 C 0.098 3.902 5 C -0.238 4.238 6 C 0.016 3.984 7 C -0.253 4.253 8 C 0.166 3.834 9 O -0.330 6.330 10 C 0.181 3.819 11 C -0.557 4.557 12 H 0.033 0.967 13 C 0.020 3.980 14 N -0.937 5.937 15 Si 0.951 3.049 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.237 1.237 19 C -0.214 4.214 20 C 0.152 3.848 21 H 0.077 0.923 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.239 0.761 25 H 0.172 0.828 26 H 0.137 0.863 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.276 0.724 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 20.409 -0.175 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.212 5.212 3 N -0.099 5.099 4 C -0.100 4.100 5 C -0.246 4.246 6 C -0.004 4.004 7 C -0.273 4.273 8 C 0.116 3.884 9 O -0.242 6.242 10 C 0.107 3.893 11 C -0.594 4.594 12 H 0.052 0.948 13 C -0.179 4.179 14 N -0.575 5.575 15 Si 0.771 3.229 16 H -0.180 1.180 17 H -0.197 1.197 18 H -0.160 1.160 19 C -0.237 4.237 20 C 0.037 3.963 21 H 0.096 0.904 22 H 0.119 0.881 23 H 0.108 0.892 24 H 0.255 0.745 25 H 0.189 0.811 26 H 0.155 0.845 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.066 21.093 -0.178 21.121 hybrid contribution 0.692 -1.464 0.035 1.620 sum 1.758 19.629 -0.142 19.708 Atomic orbital electron populations 1.21980 0.72690 1.05181 1.03906 1.48400 1.06834 1.00459 1.65458 1.76509 1.03510 1.09067 1.20798 1.25685 0.95182 0.92417 0.96681 1.20174 0.92648 0.94670 1.17096 1.20455 0.99527 0.89823 0.90604 1.21102 0.95150 0.98085 1.12936 1.19181 0.94044 0.83331 0.91824 1.86081 1.37686 1.13589 1.86888 1.20745 0.84520 0.87116 0.96950 1.21025 0.94747 0.89759 1.53896 0.94821 1.25788 1.05244 0.93927 0.92948 1.70009 1.37398 1.00073 1.50013 0.85673 0.77073 0.79959 0.80168 1.18031 1.19728 1.16012 1.18923 0.98683 0.88490 1.17637 1.18430 0.91935 0.88520 0.97451 0.90432 0.88080 0.89173 0.74498 0.81068 0.84509 0.94929 0.95083 0.91478 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.96 11.40 127.77 1.46 3.42 16 2 N -0.42 -11.48 4.05 -361.06 -1.46 -12.94 16 3 N -0.29 -7.39 12.40 -53.07 -0.66 -8.05 16 4 C 0.10 2.08 12.28 86.93 1.07 3.15 16 5 C -0.24 -6.43 6.36 -20.22 -0.13 -6.55 16 6 C 0.02 0.40 10.05 22.25 0.22 0.63 16 7 C -0.25 -8.24 8.95 22.12 0.20 -8.04 16 8 C 0.17 6.46 6.68 22.52 0.15 6.61 16 9 O -0.33 -15.74 10.11 -92.51 -0.94 -16.67 16 10 C 0.18 8.78 3.55 71.24 0.25 9.04 16 11 C -0.56 -33.06 9.99 25.60 0.26 -32.80 16 12 H 0.03 2.26 8.06 -2.91 -0.02 2.24 16 13 C 0.02 1.15 5.47 84.65 0.46 1.61 16 14 N -0.94 -57.47 13.96 21.44 0.30 -57.17 16 15 Si 0.95 40.99 27.47 68.60 1.88 42.87 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 19 C -0.21 -7.51 9.94 22.47 0.22 -7.28 16 20 C 0.15 4.72 6.87 39.20 0.27 4.99 16 21 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.09 1.58 8.13 -2.38 -0.02 1.56 16 24 H 0.24 2.53 8.06 -2.91 -0.02 2.51 16 25 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.14 4.32 6.24 -2.91 -0.02 4.30 16 27 H 0.03 1.50 6.69 -2.39 -0.02 1.49 16 28 H 0.03 1.41 7.08 -2.39 -0.02 1.40 16 29 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -72.71 265.24 4.65 -68.06 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.09 Total: 9.14 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.43 Total: -25.24 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.82 Total: -78.16 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.94 Total: -16.67 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.88 Total: 42.87 kcal Total: -72.71 4.65 -68.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.779 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds